RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 POLRMTO00411 1230 aaKnown RBP28.35■■■□□ 2.13
COL9A3-207ENST00000467819 TM4SF1P30408 202 aa28.34■■■□□ 2.13
COL9A3-207ENST00000467819 TTC5Q8N0Z6 440 aa28.34■■■□□ 2.13
COL9A3-207ENST00000467819 VSIG10Q8N0Z9 540 aa28.34■■■□□ 2.13
COL9A3-207ENST00000467819 TEFQ10587 303 aa28.33■■■□□ 2.13
COL9A3-207ENST00000467819 GAS2L2Q8NHY3 880 aa28.33■■■□□ 2.13
COL9A3-207ENST00000467819 PIM2Q9P1W9 311 aa28.33■■■□□ 2.13
COL9A3-207ENST00000467819 GNAT3A8MTJ3 354 aa28.32■■■□□ 2.12
COL9A3-207ENST00000467819 NARFQ9UHQ1 456 aa28.32■■■□□ 2.12
COL9A3-207ENST00000467819 NRXN2Q9P2S2 1712 aa28.32■■■□□ 2.12
COL9A3-207ENST00000467819 CANXP27824 592 aaKnown RBP28.31■■■□□ 2.12
COL9A3-207ENST00000467819 CHRNA5P30532 468 aa28.31■■■□□ 2.12
COL9A3-207ENST00000467819 IL17REQ8NFR9 667 aa28.31■■■□□ 2.12
COL9A3-207ENST00000467819 NFIXQ14938 502 aa28.29■■■□□ 2.12
COL9A3-207ENST00000467819 DALRD3Q5D0E6 543 aaKnown RBP28.29■■■□□ 2.12
COL9A3-207ENST00000467819 CFAP53Q96M91 514 aa28.29■■■□□ 2.12
COL9A3-207ENST00000467819 KIF3CO14782 793 aa28.28■■■□□ 2.12
COL9A3-207ENST00000467819 ZNF496Q96IT1 587 aaPredicted RBP28.28■■■□□ 2.12
COL9A3-207ENST00000467819 DLEC1Q9Y238 1755 aa28.27■■■□□ 2.12
COL9A3-207ENST00000467819 STARD3NLO95772 234 aa28.27■■■□□ 2.12
COL9A3-207ENST00000467819 PRKAR2BP31323 418 aa28.27■■■□□ 2.12
COL9A3-207ENST00000467819 ZNF790Q6PG37 636 aa28.27■■■□□ 2.12
COL9A3-207ENST00000467819 BCL2L12Q9HB09 334 aa28.27■■■□□ 2.12
COL9A3-207ENST00000467819 SBF1O95248 1867 aa28.27■■■□□ 2.12
COL9A3-207ENST00000467819 HEG1Q9ULI3 1381 aa28.25■■■□□ 2.11
COL9A3-207ENST00000467819 PHACTR3Q96KR7 559 aa28.25■■■□□ 2.11
COL9A3-207ENST00000467819 SCN7AQ01118 1682 aa28.25■■■□□ 2.11
COL9A3-207ENST00000467819 C9orf131Q5VYM1 1079 aa28.24■■■□□ 2.11
COL9A3-207ENST00000467819 RSPH6AQ9H0K4 717 aa28.24■■■□□ 2.11
COL9A3-207ENST00000467819 HSPA6P17066 643 aa28.23■■■□□ 2.11
COL9A3-207ENST00000467819 SERPINB2P05120 415 aa28.22■■■□□ 2.11
COL9A3-207ENST00000467819 EIF5P55010 431 aaKnown RBP28.22■■■□□ 2.11
COL9A3-207ENST00000467819 NUDCQ9Y266 331 aa28.22■■■□□ 2.11
COL9A3-207ENST00000467819 ZNF330Q9Y3S2 320 aaPredicted RBP28.22■■■□□ 2.11
COL9A3-207ENST00000467819 CEMIPQ8WUJ3 1361 aa28.22■■■□□ 2.11
COL9A3-207ENST00000467819 PPP2R1AP30153 589 aa28.21■■■□□ 2.11
COL9A3-207ENST00000467819 BICDL1Q6ZP65 573 aa28.21■■■□□ 2.11
COL9A3-207ENST00000467819 A0A087WZG4 1122 aa28.2■■■□□ 2.1
COL9A3-207ENST00000467819 FMNL2Q96PY5 1086 aa28.2■■■□□ 2.1
COL9A3-207ENST00000467819 TEX13AQ9BXU3 409 aaPredicted RBP28.2■■■□□ 2.1
COL9A3-207ENST00000467819 ANKRD31Q8N7Z5 1873 aa28.19■■■□□ 2.1
COL9A3-207ENST00000467819 U2AF1L5P0DN76 240 aaPredicted RBP28.19■■■□□ 2.1
COL9A3-207ENST00000467819 U2AF1Q01081 240 aaKnown RBP eCLIP28.19■■■□□ 2.1
COL9A3-207ENST00000467819 NMRK2Q9NPI5 230 aa28.19■■■□□ 2.1
COL9A3-207ENST00000467819 RNF181Q9P0P0 153 aa28.19■■■□□ 2.1
COL9A3-207ENST00000467819 CARMIL3Q8ND23 1372 aa28.19■■■□□ 2.1
COL9A3-207ENST00000467819 BTBD11A6QL63 1104 aa28.18■■■□□ 2.1
COL9A3-207ENST00000467819 KCNQ3O43525 872 aa28.18■■■□□ 2.1
COL9A3-207ENST00000467819 CCDC88AQ3V6T2 1871 aa28.17■■■□□ 2.1
COL9A3-207ENST00000467819 A1BGP04217 495 aa28.16■■■□□ 2.1
COL9A3-207ENST00000467819 TBC1D2BQ9UPU7 963 aa28.16■■■□□ 2.1
COL9A3-207ENST00000467819 BCORQ6W2J9 1755 aa28.16■■■□□ 2.1
COL9A3-207ENST00000467819 TBC1D9BQ66K14 1250 aa28.15■■■□□ 2.1
COL9A3-207ENST00000467819 IL6STP40189 918 aaPredicted RBP28.14■■■□□ 2.1
COL9A3-207ENST00000467819 C2CD5Q86YS7 1000 aa28.14■■■□□ 2.1
COL9A3-207ENST00000467819 RTF1Q92541 710 aaKnown RBP28.14■■■□□ 2.1
COL9A3-207ENST00000467819 COL11A2P13942 1736 aaPredicted RBP28.13■■■□□ 2.09
COL9A3-207ENST00000467819 TOMM70O94826 608 aa28.13■■■□□ 2.09
COL9A3-207ENST00000467819 RASSF7Q02833 373 aa28.13■■■□□ 2.09
COL9A3-207ENST00000467819 MCM10Q7L590 875 aa28.13■■■□□ 2.09
COL9A3-207ENST00000467819 NPM2Q86SE8 214 aaKnown RBP28.13■■■□□ 2.09
COL9A3-207ENST00000467819 CACNA1SQ13698 1873 aa28.12■■■□□ 2.09
COL9A3-207ENST00000467819 DLG5Q8TDM6 1919 aa28.12■■■□□ 2.09
COL9A3-207ENST00000467819 TNRC6CQ9HCJ0 1690 aaKnown RBP28.11■■■□□ 2.09
COL9A3-207ENST00000467819 H0YIN7 160 aa28.11■■■□□ 2.09
COL9A3-207ENST00000467819 TTLL6Q8N841 843 aa28.11■■■□□ 2.09
COL9A3-207ENST00000467819 TIAM2Q8IVF5 1701 aa28.09■■■□□ 2.09
COL9A3-207ENST00000467819 PIP4K2AP48426 406 aaPredicted RBP28.09■■■□□ 2.09
COL9A3-207ENST00000467819 DCTN1Q14203 1278 aa28.09■■■□□ 2.09
COL9A3-207ENST00000467819 CCDC24Q8N4L8 307 aa28.09■■■□□ 2.09
COL9A3-207ENST00000467819 USP16Q9Y5T5 823 aa28.09■■■□□ 2.09
COL9A3-207ENST00000467819 KDM2BQ8NHM5 1336 aa28.09■■■□□ 2.09
COL9A3-207ENST00000467819 PRAMEF22A3QJZ6 481 aa28.08■■■□□ 2.09
COL9A3-207ENST00000467819 CAMTA2O94983 1202 aa28.07■■■□□ 2.08
COL9A3-207ENST00000467819 PRR5LQ6MZQ0 368 aa28.07■■■□□ 2.08
COL9A3-207ENST00000467819 C16orf71Q8IYS4 520 aaPredicted RBP28.07■■■□□ 2.08
COL9A3-207ENST00000467819 DZIP3Q86Y13 1208 aaKnown RBP28.06■■■□□ 2.08
COL9A3-207ENST00000467819 ZNF622Q969S3 477 aaKnown RBP eCLIP28.06■■■□□ 2.08
COL9A3-207ENST00000467819 SETDB2Q96T68 719 aa28.05■■■□□ 2.08
COL9A3-207ENST00000467819 NPHP1O15259 732 aa28.04■■■□□ 2.08
COL9A3-207ENST00000467819 SNRPA1P09661 255 aaKnown RBP28.04■■■□□ 2.08
COL9A3-207ENST00000467819 PDE6BP35913 854 aa28.04■■■□□ 2.08
COL9A3-207ENST00000467819 BRIP1Q9BX63 1249 aa28.04■■■□□ 2.08
COL9A3-207ENST00000467819 LMNB1P20700 586 aa28.03■■■□□ 2.08
COL9A3-207ENST00000467819 APLP1P51693 650 aa28.03■■■□□ 2.08
COL9A3-207ENST00000467819 PRELPP51888 382 aa28.03■■■□□ 2.08
COL9A3-207ENST00000467819 RBM46Q8TBY0 533 aaKnown RBP28.03■■■□□ 2.08
COL9A3-207ENST00000467819 RRAGCQ9HB90 399 aa28.03■■■□□ 2.08
COL9A3-207ENST00000467819 LAMB4A4D0S4 1761 aa28.03■■■□□ 2.08
COL9A3-207ENST00000467819 WDR90Q96KV7 1748 aa28.03■■■□□ 2.08
COL9A3-207ENST00000467819 FER1L6Q2WGJ9 1857 aa28.02■■■□□ 2.08
COL9A3-207ENST00000467819 HTATSF1O43719 755 aaKnown RBP28.02■■■□□ 2.08
COL9A3-207ENST00000467819 CNBD1Q8NA66 436 aa28.02■■■□□ 2.08
COL9A3-207ENST00000467819 ZNF219Q9P2Y4 722 aaPredicted RBP28.02■■■□□ 2.08
COL9A3-207ENST00000467819 PDZRN3Q9UPQ7 1066 aa28.01■■■□□ 2.07
COL9A3-207ENST00000467819 DICER1Q9UPY3 1922 aaKnown RBP28■■■□□ 2.07
COL9A3-207ENST00000467819 ZC3H4Q9UPT8 1303 aaKnown RBP28■■■□□ 2.07
COL9A3-207ENST00000467819 NFKBIEO00221 500 aa28■■■□□ 2.07
COL9A3-207ENST00000467819 KDM3BQ7LBC6 1761 aa28■■■□□ 2.07
COL9A3-207ENST00000467819 ARFGEF2Q9Y6D5 1785 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms