RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 COG3Q96JB2 828 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 POLR3GLQ9BT43 218 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 KNSTRNQ9Y448 316 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 KIF24Q5T7B8 1368 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 NPC1L1Q9UHC9 1359 aa9.44□□□□□ -0.9
CLDN4-204ENST00000466411 FAM208AQ9UK61 1670 aaKnown RBP9.44□□□□□ -0.9
CLDN4-204ENST00000466411 LTN1O94822 1766 aa9.43□□□□□ -0.9
CLDN4-204ENST00000466411 PALLDQ8WX93 1383 aa9.43□□□□□ -0.9
CLDN4-204ENST00000466411 HMGB2P26583 209 aaKnown RBP9.43□□□□□ -0.9
CLDN4-204ENST00000466411 PIM2Q9P1W9 311 aa9.43□□□□□ -0.9
CLDN4-204ENST00000466411 RTL1A6NKG5 1358 aa9.42□□□□□ -0.9
CLDN4-204ENST00000466411 ITGBL1O95965 494 aaPredicted RBP9.42□□□□□ -0.9
CLDN4-204ENST00000466411 AK7Q96M32 723 aa9.42□□□□□ -0.9
CLDN4-204ENST00000466411 CASP8AP2Q9UKL3 1982 aa9.41□□□□□ -0.9
CLDN4-204ENST00000466411 RASSF10A6NK89 507 aa9.41□□□□□ -0.9
CLDN4-204ENST00000466411 RASSF7Q02833 373 aa9.41□□□□□ -0.9
CLDN4-204ENST00000466411 DALRD3Q5D0E6 543 aaKnown RBP9.41□□□□□ -0.9
CLDN4-204ENST00000466411 PAXIP1Q6ZW49 1069 aaPredicted RBP9.41□□□□□ -0.9
CLDN4-204ENST00000466411 LINC00116Q8NCU8 138 aa9.41□□□□□ -0.9
CLDN4-204ENST00000466411 ZCRB1Q8TBF4 217 aaKnown RBP9.41□□□□□ -0.9
CLDN4-204ENST00000466411 MCOLN1Q9GZU1 580 aa9.41□□□□□ -0.9
CLDN4-204ENST00000466411 C4AP0C0L4 1744 aa9.41□□□□□ -0.9
CLDN4-204ENST00000466411 MAP2K1Q02750 393 aaPredicted RBP9.4□□□□□ -0.9
CLDN4-204ENST00000466411 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.4□□□□□ -0.9
CLDN4-204ENST00000466411 PANK3Q9H999 370 aa9.4□□□□□ -0.9
CLDN4-204ENST00000466411 MEGF6O75095 1541 aa9.4□□□□□ -0.91
CLDN4-204ENST00000466411 ITGB4P16144 1822 aa9.4□□□□□ -0.91
CLDN4-204ENST00000466411 THSD7BQ9C0I4 1608 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 TMEM88BA6NKF7 163 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 LMNB1P20700 586 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 NLGN1Q8N2Q7 840 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 CFAP44Q96MT7 982 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 CCDC87Q9NVE4 849 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 RGPD2P0DJD1 1756 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 TIAM2Q8IVF5 1701 aa9.39□□□□□ -0.91
CLDN4-204ENST00000466411 SMG6Q86US8 1419 aaKnown RBP9.39□□□□□ -0.91
CLDN4-204ENST00000466411 WDR33Q9C0J8 1336 aaKnown RBP9.38□□□□□ -0.91
CLDN4-204ENST00000466411 FYB1O15117 783 aa9.38□□□□□ -0.91
CLDN4-204ENST00000466411 ITPK1Q13572 414 aa9.38□□□□□ -0.91
CLDN4-204ENST00000466411 TAOK2Q9UL54 1235 aa9.38□□□□□ -0.91
CLDN4-204ENST00000466411 DICER1Q9UPY3 1922 aaKnown RBP9.38□□□□□ -0.91
CLDN4-204ENST00000466411 ZNF316A6NFI3 1004 aaPredicted RBP9.37□□□□□ -0.91
CLDN4-204ENST00000466411 GYS1P13807 737 aa9.37□□□□□ -0.91
CLDN4-204ENST00000466411 DEFB115Q30KQ5 88 aa9.37□□□□□ -0.91
CLDN4-204ENST00000466411 NME9Q86XW9 330 aa9.37□□□□□ -0.91
CLDN4-204ENST00000466411 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.36□□□□□ -0.91
CLDN4-204ENST00000466411 STK25O00506 426 aa9.36□□□□□ -0.91
CLDN4-204ENST00000466411 CHRNA5P30532 468 aa9.36□□□□□ -0.91
CLDN4-204ENST00000466411 IP6K1Q92551 441 aa9.36□□□□□ -0.91
CLDN4-204ENST00000466411 SMARCC1Q92922 1105 aaPredicted RBP9.36□□□□□ -0.91
CLDN4-204ENST00000466411 ZFP91Q96JP5 570 aaPredicted RBP9.36□□□□□ -0.91
CLDN4-204ENST00000466411 CARD14Q9BXL6 1004 aa9.36□□□□□ -0.91
CLDN4-204ENST00000466411 LTBP1Q14766 1721 aa9.36□□□□□ -0.91
CLDN4-204ENST00000466411 FLT4P35916 1363 aa9.36□□□□□ -0.91
CLDN4-204ENST00000466411 LOC102724428A0A0B4J2F2 783 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 NFKBIEO00221 500 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 GNPATO15228 680 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 SIK1P57059 783 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 NKX1-1Q15270 411 aaPredicted RBP9.35□□□□□ -0.91
CLDN4-204ENST00000466411 MPRIPQ6WCQ1 1025 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 MORC1Q86VD1 984 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 SPRYD3Q8NCJ5 442 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 PIGBQ92521 554 aa9.35□□□□□ -0.91
CLDN4-204ENST00000466411 PER1O15534 1290 aaPredicted RBP9.34□□□□□ -0.91
CLDN4-204ENST00000466411 ARHGEF1Q92888 912 aaKnown RBP9.34□□□□□ -0.91
CLDN4-204ENST00000466411 GGNBP2Q9H3C7 697 aa9.34□□□□□ -0.91
CLDN4-204ENST00000466411 ADAMTSL1Q8N6G6 1762 aa9.34□□□□□ -0.91
CLDN4-204ENST00000466411 MYH14Q7Z406 1995 aaKnown RBP9.33□□□□□ -0.92
CLDN4-204ENST00000466411 DDR1Q08345 913 aa9.33□□□□□ -0.92
CLDN4-204ENST00000466411 HABP4Q5JVS0 413 aaKnown RBP9.33□□□□□ -0.92
CLDN4-204ENST00000466411 DPY19L2Q6NUT2 758 aa9.33□□□□□ -0.92
CLDN4-204ENST00000466411 TSKSQ9UJT2 592 aa9.33□□□□□ -0.92
CLDN4-204ENST00000466411 PARP3Q9Y6F1 533 aa9.33□□□□□ -0.92
CLDN4-204ENST00000466411 A0A0C4DFX4 3053 aa9.33□□□□□ -0.92
CLDN4-204ENST00000466411 CYP27B1O15528 508 aa9.32□□□□□ -0.92
CLDN4-204ENST00000466411 AMPHP49418 695 aa9.32□□□□□ -0.92
CLDN4-204ENST00000466411 RALBP1Q15311 655 aa9.32□□□□□ -0.92
CLDN4-204ENST00000466411 TRAPPC3LQ5T215 181 aa9.32□□□□□ -0.92
CLDN4-204ENST00000466411 ZNF467Q7Z7K2 595 aaPredicted RBP9.32□□□□□ -0.92
CLDN4-204ENST00000466411 LDHDQ86WU2 507 aa9.32□□□□□ -0.92
CLDN4-204ENST00000466411 INSRP06213 1382 aa9.32□□□□□ -0.92
CLDN4-204ENST00000466411 SCN4AP35499 1836 aa9.31□□□□□ -0.92
CLDN4-204ENST00000466411 DDNO94850 711 aaPredicted RBP9.31□□□□□ -0.92
CLDN4-204ENST00000466411 SOX10P56693 466 aa9.31□□□□□ -0.92
CLDN4-204ENST00000466411 LTV1Q96GA3 475 aaPredicted RBP9.31□□□□□ -0.92
CLDN4-204ENST00000466411 SLC4A9Q96Q91 983 aa9.31□□□□□ -0.92
CLDN4-204ENST00000466411 TAF1DQ9H5J8 278 aaPredicted RBP9.31□□□□□ -0.92
CLDN4-204ENST00000466411 PCDHB8Q9UN66 801 aa9.31□□□□□ -0.92
CLDN4-204ENST00000466411 PCDHB13Q9Y5F0 798 aa9.31□□□□□ -0.92
CLDN4-204ENST00000466411 STK24Q9Y6E0 443 aa9.31□□□□□ -0.92
CLDN4-204ENST00000466411 MKI67P46013 3256 aaKnown RBP9.31□□□□□ -0.92
CLDN4-204ENST00000466411 MAP3K19Q56UN5 1328 aa9.31□□□□□ -0.92
CLDN4-204ENST00000466411 SZT2Q5T011 3432 aa9.3□□□□□ -0.92
CLDN4-204ENST00000466411 FER1L6Q2WGJ9 1857 aa9.3□□□□□ -0.92
CLDN4-204ENST00000466411 DLEC1Q9Y238 1755 aa9.3□□□□□ -0.92
CLDN4-204ENST00000466411 DGKZQ13574 1117 aa9.3□□□□□ -0.92
CLDN4-204ENST00000466411 NBPF6Q5VWK0 638 aa9.3□□□□□ -0.92
CLDN4-204ENST00000466411 L3MBTL3Q96JM7 780 aaPredicted RBP9.3□□□□□ -0.92
CLDN4-204ENST00000466411 NBPF4Q96M43 638 aa9.3□□□□□ -0.92
CLDN4-204ENST00000466411 CFAP53Q96M91 514 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms