RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 KIF3CO14782 793 aa27.91■■■□□ 2.06
COL6A1-203ENST00000466285 CHRNA5P30532 468 aa27.91■■■□□ 2.06
COL6A1-203ENST00000466285 FCHSD2O94868 740 aa27.9■■■□□ 2.06
COL6A1-203ENST00000466285 BCL2L12Q9HB09 334 aa27.9■■■□□ 2.06
COL6A1-203ENST00000466285 SBF1O95248 1867 aa27.89■■■□□ 2.06
COL6A1-203ENST00000466285 TM4SF1P30408 202 aa27.88■■■□□ 2.05
COL6A1-203ENST00000466285 ANKRD31Q8N7Z5 1873 aa27.88■■■□□ 2.05
COL6A1-203ENST00000466285 CARMIL3Q8ND23 1372 aa27.87■■■□□ 2.05
COL6A1-203ENST00000466285 U2SURPO15042 1029 aaKnown RBP27.87■■■□□ 2.05
COL6A1-203ENST00000466285 ARHGAP27Q6ZUM4 889 aa27.87■■■□□ 2.05
COL6A1-203ENST00000466285 COL11A2P13942 1736 aaPredicted RBP27.86■■■□□ 2.05
COL6A1-203ENST00000466285 NFIXQ14938 502 aa27.85■■■□□ 2.05
COL6A1-203ENST00000466285 IL17REQ8NFR9 667 aa27.85■■■□□ 2.05
COL6A1-203ENST00000466285 BCORQ6W2J9 1755 aa27.82■■■□□ 2.04
COL6A1-203ENST00000466285 ZNF496Q96IT1 587 aaPredicted RBP27.82■■■□□ 2.04
COL6A1-203ENST00000466285 NARFQ9UHQ1 456 aa27.82■■■□□ 2.04
COL6A1-203ENST00000466285 ZPR1O75312 459 aa27.81■■■□□ 2.04
COL6A1-203ENST00000466285 CANXP27824 592 aaKnown RBP27.81■■■□□ 2.04
COL6A1-203ENST00000466285 PHACTR3Q96KR7 559 aa27.81■■■□□ 2.04
COL6A1-203ENST00000466285 NMRK2Q9NPI5 230 aa27.81■■■□□ 2.04
COL6A1-203ENST00000466285 PIM2Q9P1W9 311 aa27.8■■■□□ 2.04
COL6A1-203ENST00000466285 HSPA6P17066 643 aa27.79■■■□□ 2.04
COL6A1-203ENST00000466285 C9orf131Q5VYM1 1079 aa27.79■■■□□ 2.04
COL6A1-203ENST00000466285 TIAM2Q8IVF5 1701 aa27.78■■■□□ 2.04
COL6A1-203ENST00000466285 CEMIPQ8WUJ3 1361 aa27.78■■■□□ 2.04
COL6A1-203ENST00000466285 HEG1Q9ULI3 1381 aa27.78■■■□□ 2.04
COL6A1-203ENST00000466285 KCNQ3O43525 872 aa27.78■■■□□ 2.04
COL6A1-203ENST00000466285 DALRD3Q5D0E6 543 aaKnown RBP27.78■■■□□ 2.04
COL6A1-203ENST00000466285 VSIG10Q8N0Z9 540 aa27.78■■■□□ 2.04
COL6A1-203ENST00000466285 RSPH6AQ9H0K4 717 aa27.78■■■□□ 2.04
COL6A1-203ENST00000466285 PRKAR2BP31323 418 aa27.77■■■□□ 2.04
COL6A1-203ENST00000466285 CCDC88AQ3V6T2 1871 aa27.76■■■□□ 2.04
COL6A1-203ENST00000466285 GNAT3A8MTJ3 354 aa27.76■■■□□ 2.03
COL6A1-203ENST00000466285 RASSF7Q02833 373 aa27.76■■■□□ 2.03
COL6A1-203ENST00000466285 CACNA1SQ13698 1873 aa27.76■■■□□ 2.03
COL6A1-203ENST00000466285 PRELPP51888 382 aa27.75■■■□□ 2.03
COL6A1-203ENST00000466285 EIF5P55010 431 aaKnown RBP27.75■■■□□ 2.03
COL6A1-203ENST00000466285 ZNF790Q6PG37 636 aa27.75■■■□□ 2.03
COL6A1-203ENST00000466285 BICDL1Q6ZP65 573 aa27.74■■■□□ 2.03
COL6A1-203ENST00000466285 TTC5Q8N0Z6 440 aa27.74■■■□□ 2.03
COL6A1-203ENST00000466285 GAS2L2Q8NHY3 880 aa27.74■■■□□ 2.03
COL6A1-203ENST00000466285 TNRC6CQ9HCJ0 1690 aaKnown RBP27.73■■■□□ 2.03
COL6A1-203ENST00000466285 SERPINB2P05120 415 aa27.73■■■□□ 2.03
COL6A1-203ENST00000466285 TEFQ10587 303 aa27.73■■■□□ 2.03
COL6A1-203ENST00000466285 RNF181Q9P0P0 153 aa27.72■■■□□ 2.03
COL6A1-203ENST00000466285 DLG5Q8TDM6 1919 aa27.71■■■□□ 2.03
COL6A1-203ENST00000466285 PRAMEF22A3QJZ6 481 aa27.71■■■□□ 2.03
COL6A1-203ENST00000466285 PPP2R1AP30153 589 aa27.71■■■□□ 2.03
COL6A1-203ENST00000466285 TBC1D9BQ66K14 1250 aa27.71■■■□□ 2.03
COL6A1-203ENST00000466285 CCDC24Q8N4L8 307 aa27.71■■■□□ 2.03
COL6A1-203ENST00000466285 WDR90Q96KV7 1748 aa27.71■■■□□ 2.03
COL6A1-203ENST00000466285 PIP4K2AP48426 406 aaPredicted RBP27.7■■■□□ 2.02
COL6A1-203ENST00000466285 ZNF330Q9Y3S2 320 aaPredicted RBP27.7■■■□□ 2.02
COL6A1-203ENST00000466285 A1BGP04217 495 aa27.69■■■□□ 2.02
COL6A1-203ENST00000466285 TBC1D2BQ9UPU7 963 aa27.69■■■□□ 2.02
COL6A1-203ENST00000466285 STARD3NLO95772 234 aa27.67■■■□□ 2.02
COL6A1-203ENST00000466285 MCM10Q7L590 875 aa27.66■■■□□ 2.02
COL6A1-203ENST00000466285 FER1L6Q2WGJ9 1857 aa27.66■■■□□ 2.02
COL6A1-203ENST00000466285 LAMB4A4D0S4 1761 aa27.65■■■□□ 2.02
COL6A1-203ENST00000466285 TOMM70O94826 608 aa27.65■■■□□ 2.02
COL6A1-203ENST00000466285 DCTN1Q14203 1278 aa27.65■■■□□ 2.02
COL6A1-203ENST00000466285 C2CD5Q86YS7 1000 aa27.65■■■□□ 2.02
COL6A1-203ENST00000466285 ARFGEF2Q9Y6D5 1785 aa27.64■■■□□ 2.02
COL6A1-203ENST00000466285 FMNL2Q96PY5 1086 aa27.64■■■□□ 2.02
COL6A1-203ENST00000466285 SLX4Q8IY92 1834 aa27.63■■■□□ 2.01
COL6A1-203ENST00000466285 BTBD11A6QL63 1104 aa27.63■■■□□ 2.01
COL6A1-203ENST00000466285 CAMTA2O94983 1202 aa27.63■■■□□ 2.01
COL6A1-203ENST00000466285 PRR5LQ6MZQ0 368 aa27.63■■■□□ 2.01
COL6A1-203ENST00000466285 KDM3BQ7LBC6 1761 aa27.63■■■□□ 2.01
COL6A1-203ENST00000466285 NFKBIEO00221 500 aa27.62■■■□□ 2.01
COL6A1-203ENST00000466285 U2AF1L5P0DN76 240 aaPredicted RBP27.62■■■□□ 2.01
COL6A1-203ENST00000466285 U2AF1Q01081 240 aaKnown RBP eCLIP27.62■■■□□ 2.01
COL6A1-203ENST00000466285 CFAP53Q96M91 514 aa27.62■■■□□ 2.01
COL6A1-203ENST00000466285 USP16Q9Y5T5 823 aa27.62■■■□□ 2.01
COL6A1-203ENST00000466285 IL6STP40189 918 aaPredicted RBP27.61■■■□□ 2.01
COL6A1-203ENST00000466285 HTRA3P83110 453 aa27.61■■■□□ 2.01
COL6A1-203ENST00000466285 DICER1Q9UPY3 1922 aaKnown RBP27.59■■■□□ 2.01
COL6A1-203ENST00000466285 A0A087WZG4 1122 aa27.59■■■□□ 2.01
COL6A1-203ENST00000466285 TTLL6Q8N841 843 aa27.58■■■□□ 2.01
COL6A1-203ENST00000466285 RRAGCQ9HB90 399 aa27.58■■■□□ 2.01
COL6A1-203ENST00000466285 ZNF219Q9P2Y4 722 aaPredicted RBP27.57■■■□□ 2
COL6A1-203ENST00000466285 TEX13AQ9BXU3 409 aaPredicted RBP27.56■■■□□ 2
COL6A1-203ENST00000466285 H0YIN7 160 aa27.55■■■□□ 2
COL6A1-203ENST00000466285 DZIP3Q86Y13 1208 aaKnown RBP27.55■■■□□ 2
COL6A1-203ENST00000466285 RBM46Q8TBY0 533 aaKnown RBP27.55■■■□□ 2
COL6A1-203ENST00000466285 NBPF26B4DH59 902 aa27.54■■■□□ 2
COL6A1-203ENST00000466285 NBPF10Q6P3W6 841 aaKnown RBP27.54■■■□□ 2
COL6A1-203ENST00000466285 NBPF15Q8N660 670 aa27.54■■■□□ 2
COL6A1-203ENST00000466285 DNAJC5GQ8N7S2 189 aa27.54■■■□□ 2
COL6A1-203ENST00000466285 KDM2BQ8NHM5 1336 aa27.54■■■□□ 2
COL6A1-203ENST00000466285 NUDCQ9Y266 331 aa27.54■■■□□ 2
COL6A1-203ENST00000466285 LMNB1P20700 586 aa27.53■■■□□ 2
COL6A1-203ENST00000466285 APLP1P51693 650 aa27.53■■■□□ 2
COL6A1-203ENST00000466285 MIS18AQ9NYP9 233 aa27.53■■■□□ 2
COL6A1-203ENST00000466285 ZNF622Q969S3 477 aaKnown RBP eCLIP27.52■■■□□ 2
COL6A1-203ENST00000466285 BRIP1Q9BX63 1249 aa27.52■■■□□ 2
COL6A1-203ENST00000466285 C21orf2O43822 256 aa27.51■■□□□ 1.99
COL6A1-203ENST00000466285 CNBD1Q8NA66 436 aa27.51■■□□□ 1.99
COL6A1-203ENST00000466285 RTF1Q92541 710 aaKnown RBP27.49■■□□□ 1.99
COL6A1-203ENST00000466285 SNRPA1P09661 255 aaKnown RBP27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms