RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 ANKRD26Q9UPS8 1709 aa13.59□□□□□ -0.23
USP39-212ENST00000465514 POTEIP0CG38 1075 aa13.59□□□□□ -0.23
USP39-212ENST00000465514 POTEJP0CG39 1038 aa13.59□□□□□ -0.23
USP39-212ENST00000465514 VEGFBP49765 207 aa13.59□□□□□ -0.23
USP39-212ENST00000465514 WBP1LQ9NX94 342 aa13.59□□□□□ -0.23
USP39-212ENST00000465514 CCDC85CA6NKD9 419 aa13.58□□□□□ -0.24
USP39-212ENST00000465514 HSPA8P11142 646 aaKnown RBP13.58□□□□□ -0.24
USP39-212ENST00000465514 C1QBPQ07021 282 aaKnown RBP13.58□□□□□ -0.24
USP39-212ENST00000465514 USP42Q9H9J4 1324 aaKnown RBP13.58□□□□□ -0.24
USP39-212ENST00000465514 NFKBIEO00221 500 aa13.57□□□□□ -0.24
USP39-212ENST00000465514 POLRMTO00411 1230 aaKnown RBP13.57□□□□□ -0.24
USP39-212ENST00000465514 RGS19P49795 217 aa13.57□□□□□ -0.24
USP39-212ENST00000465514 GGNBP2Q9H3C7 697 aa13.57□□□□□ -0.24
USP39-212ENST00000465514 CACNA1SQ13698 1873 aa13.57□□□□□ -0.24
USP39-212ENST00000465514 KIF24Q5T7B8 1368 aa13.57□□□□□ -0.24
USP39-212ENST00000465514 SCN4AP35499 1836 aa13.56□□□□□ -0.24
USP39-212ENST00000465514 FYB1O15117 783 aa13.56□□□□□ -0.24
USP39-212ENST00000465514 PHKG2P15735 406 aa13.56□□□□□ -0.24
USP39-212ENST00000465514 DPY19L2Q6NUT2 758 aa13.56□□□□□ -0.24
USP39-212ENST00000465514 PASKQ96RG2 1323 aa13.56□□□□□ -0.24
USP39-212ENST00000465514 TRIM26Q12899 539 aaPredicted RBP13.55□□□□□ -0.24
USP39-212ENST00000465514 IFNL2Q8IZJ0 200 aa13.55□□□□□ -0.24
USP39-212ENST00000465514 COL11A2P13942 1736 aaPredicted RBP13.55□□□□□ -0.24
USP39-212ENST00000465514 THSD7BQ9C0I4 1608 aa13.54□□□□□ -0.24
USP39-212ENST00000465514 ANKRD31Q8N7Z5 1873 aa13.54□□□□□ -0.24
USP39-212ENST00000465514 TMEM88BA6NKF7 163 aa13.53□□□□□ -0.24
USP39-212ENST00000465514 TM4SF1P30408 202 aa13.53□□□□□ -0.24
USP39-212ENST00000465514 CRKLP46109 303 aaKnown RBP13.53□□□□□ -0.24
USP39-212ENST00000465514 TTLL6Q8N841 843 aa13.53□□□□□ -0.24
USP39-212ENST00000465514 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP39-212ENST00000465514 ERFEQ4G0M1 354 aa13.52□□□□□ -0.25
USP39-212ENST00000465514 EMILIN1Q9Y6C2 1016 aa13.52□□□□□ -0.25
USP39-212ENST00000465514 ADAMTSL1Q8N6G6 1762 aa13.52□□□□□ -0.25
USP39-212ENST00000465514 CDCA8Q53HL2 280 aa13.51□□□□□ -0.25
USP39-212ENST00000465514 LDHDQ86WU2 507 aa13.51□□□□□ -0.25
USP39-212ENST00000465514 CARMIL3Q8ND23 1372 aa13.5□□□□□ -0.25
USP39-212ENST00000465514 DDNO94850 711 aaPredicted RBP13.5□□□□□ -0.25
USP39-212ENST00000465514 C2CD5Q86YS7 1000 aa13.5□□□□□ -0.25
USP39-212ENST00000465514 ERVV-2B6SEH9 535 aa13.49□□□□□ -0.25
USP39-212ENST00000465514 PTCD1O75127 700 aaKnown RBP13.49□□□□□ -0.25
USP39-212ENST00000465514 MAP2K1Q02750 393 aaPredicted RBP13.49□□□□□ -0.25
USP39-212ENST00000465514 USPL1Q5W0Q7 1092 aa13.49□□□□□ -0.25
USP39-212ENST00000465514 CFAP44Q96MT7 982 aa13.49□□□□□ -0.25
USP39-212ENST00000465514 EYA1Q99502 592 aa13.49□□□□□ -0.25
USP39-212ENST00000465514 ARFGEF2Q9Y6D5 1785 aa13.49□□□□□ -0.25
USP39-212ENST00000465514 LTBP1Q14766 1721 aa13.49□□□□□ -0.25
USP39-212ENST00000465514 CASP8AP2Q9UKL3 1982 aa13.49□□□□□ -0.25
USP39-212ENST00000465514 RASSF10A6NK89 507 aa13.48□□□□□ -0.25
USP39-212ENST00000465514 PPM1GO15355 546 aaPredicted RBP13.48□□□□□ -0.25
USP39-212ENST00000465514 ZPR1O75312 459 aa13.48□□□□□ -0.25
USP39-212ENST00000465514 ITGBL1O95965 494 aaPredicted RBP13.48□□□□□ -0.25
USP39-212ENST00000465514 NFIXQ14938 502 aa13.48□□□□□ -0.25
USP39-212ENST00000465514 CARD14Q9BXL6 1004 aa13.48□□□□□ -0.25
USP39-212ENST00000465514 ZNF219Q9P2Y4 722 aaPredicted RBP13.48□□□□□ -0.25
USP39-212ENST00000465514 WDR33Q9C0J8 1336 aaKnown RBP13.47□□□□□ -0.25
USP39-212ENST00000465514 IQCA1LA6NCM1 817 aa13.47□□□□□ -0.25
USP39-212ENST00000465514 DEFB115Q30KQ5 88 aa13.47□□□□□ -0.25
USP39-212ENST00000465514 TAF1DQ9H5J8 278 aaPredicted RBP13.47□□□□□ -0.25
USP39-212ENST00000465514 SLX4Q8IY92 1834 aa13.47□□□□□ -0.25
USP39-212ENST00000465514 H0YIN7 160 aa13.46□□□□□ -0.25
USP39-212ENST00000465514 C21orf2O43822 256 aa13.46□□□□□ -0.25
USP39-212ENST00000465514 INTS5Q6P9B9 1019 aaKnown RBP13.46□□□□□ -0.25
USP39-212ENST00000465514 SCN11AQ9UI33 1791 aa13.45□□□□□ -0.26
USP39-212ENST00000465514 TRPM7Q96QT4 1865 aa13.45□□□□□ -0.26
USP39-212ENST00000465514 SERPINB2P05120 415 aa13.45□□□□□ -0.26
USP39-212ENST00000465514 CABP4P57796 275 aa13.45□□□□□ -0.26
USP39-212ENST00000465514 EAPPQ56P03 285 aaPredicted RBP13.45□□□□□ -0.26
USP39-212ENST00000465514 TAOK3Q9H2K8 898 aa13.45□□□□□ -0.26
USP39-212ENST00000465514 SOS1Q07889 1333 aaPredicted RBP13.44□□□□□ -0.26
USP39-212ENST00000465514 LTBP3Q9NS15 1303 aa13.44□□□□□ -0.26
USP39-212ENST00000465514 ZNF622Q969S3 477 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP39-212ENST00000465514 L3MBTL3Q96JM7 780 aaPredicted RBP13.44□□□□□ -0.26
USP39-212ENST00000465514 ABT1Q9ULW3 272 aaKnown RBP13.44□□□□□ -0.26
USP39-212ENST00000465514 COL15A1P39059 1388 aa13.44□□□□□ -0.26
USP39-212ENST00000465514 WASHC2AQ641Q2 1341 aa13.43□□□□□ -0.26
USP39-212ENST00000465514 HSP90AB1P08238 724 aaKnown RBP13.43□□□□□ -0.26
USP39-212ENST00000465514 TSKSQ9UJT2 592 aa13.43□□□□□ -0.26
USP39-212ENST00000465514 TIMELESSQ9UNS1 1208 aa13.43□□□□□ -0.26
USP39-212ENST00000465514 CLEC11AQ9Y240 323 aa13.43□□□□□ -0.26
USP39-212ENST00000465514 BEGAINQ9BUH8 593 aa13.42□□□□□ -0.26
USP39-212ENST00000465514 MCOLN1Q9GZU1 580 aa13.42□□□□□ -0.26
USP39-212ENST00000465514 NARFQ9UHQ1 456 aa13.42□□□□□ -0.26
USP39-212ENST00000465514 SCN7AQ01118 1682 aa13.42□□□□□ -0.26
USP39-212ENST00000465514 MAP1SQ66K74 1059 aaPredicted RBP13.41□□□□□ -0.26
USP39-212ENST00000465514 BCL2L12Q9HB09 334 aa13.41□□□□□ -0.26
USP39-212ENST00000465514 GRM1Q13255 1194 aa13.4□□□□□ -0.26
USP39-212ENST00000465514 ZNF530Q6P9A1 599 aaPredicted RBP13.4□□□□□ -0.26
USP39-212ENST00000465514 PAXIP1Q6ZW49 1069 aaPredicted RBP13.4□□□□□ -0.26
USP39-212ENST00000465514 DNAJC10Q8IXB1 793 aa13.4□□□□□ -0.26
USP39-212ENST00000465514 CNTROBQ8N137 903 aa13.4□□□□□ -0.26
USP39-212ENST00000465514 CAPNS2Q96L46 248 aa13.4□□□□□ -0.26
USP39-212ENST00000465514 PCGF6Q9BYE7 350 aa13.4□□□□□ -0.26
USP39-212ENST00000465514 ZNF541Q9H0D2 1346 aa13.39□□□□□ -0.27
USP39-212ENST00000465514 EPHX2P34913 555 aa13.39□□□□□ -0.27
USP39-212ENST00000465514 EIF4A2Q14240 407 aaKnown RBP13.39□□□□□ -0.27
USP39-212ENST00000465514 BICDL1Q6ZP65 573 aa13.39□□□□□ -0.27
USP39-212ENST00000465514 NFATC2IPQ8NCF5 419 aa13.39□□□□□ -0.27
USP39-212ENST00000465514 POLR3GLQ9BT43 218 aa13.39□□□□□ -0.27
USP39-212ENST00000465514 HACL1Q9UJ83 578 aa13.39□□□□□ -0.27
USP39-212ENST00000465514 MTHFSP49914 203 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms