RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TOMM70O94826 608 aa30.6■■■□□ 2.49
USP4-208ENST00000464168 VSIG10Q8N0Z9 540 aa30.6■■■□□ 2.49
USP4-208ENST00000464168 NFIXQ14938 502 aa30.59■■■□□ 2.49
USP4-208ENST00000464168 COL15A1P39059 1388 aa30.58■■■□□ 2.49
USP4-208ENST00000464168 ARFGEF1Q9Y6D6 1849 aa30.58■■■□□ 2.49
USP4-208ENST00000464168 BCL2L12Q9HB09 334 aa30.57■■■□□ 2.48
USP4-208ENST00000464168 NPC1L1Q9UHC9 1359 aa30.54■■■□□ 2.48
USP4-208ENST00000464168 IFFO2Q5TF58 517 aa30.54■■■□□ 2.48
USP4-208ENST00000464168 COL3A1P02461 1466 aaPredicted RBP30.53■■■□□ 2.48
USP4-208ENST00000464168 APLP1P51693 650 aa30.53■■■□□ 2.48
USP4-208ENST00000464168 RNF181Q9P0P0 153 aa30.53■■■□□ 2.48
USP4-208ENST00000464168 CANXP27824 592 aaKnown RBP30.52■■■□□ 2.48
USP4-208ENST00000464168 CNGB1Q14028 1251 aaPredicted RBP30.52■■■□□ 2.48
USP4-208ENST00000464168 IL17REQ8NFR9 667 aa30.52■■■□□ 2.48
USP4-208ENST00000464168 U2SURPO15042 1029 aaKnown RBP30.51■■■□□ 2.47
USP4-208ENST00000464168 STARD3NLO95772 234 aa30.51■■■□□ 2.47
USP4-208ENST00000464168 SERPINB2P05120 415 aa30.51■■■□□ 2.47
USP4-208ENST00000464168 TTC5Q8N0Z6 440 aa30.51■■■□□ 2.47
USP4-208ENST00000464168 VIRMAQ69YN4 1812 aaKnown RBP30.51■■■□□ 2.47
USP4-208ENST00000464168 EIF5P55010 431 aaKnown RBP30.5■■■□□ 2.47
USP4-208ENST00000464168 GNAT3A8MTJ3 354 aa30.49■■■□□ 2.47
USP4-208ENST00000464168 ZNF496Q96IT1 587 aaPredicted RBP30.49■■■□□ 2.47
USP4-208ENST00000464168 GAS2L2Q8NHY3 880 aa30.48■■■□□ 2.47
USP4-208ENST00000464168 RBM46Q8TBY0 533 aaKnown RBP30.48■■■□□ 2.47
USP4-208ENST00000464168 UBR2Q8IWV8 1755 aa30.48■■■□□ 2.47
USP4-208ENST00000464168 TEFQ10587 303 aa30.47■■■□□ 2.47
USP4-208ENST00000464168 ZNF790Q6PG37 636 aa30.47■■■□□ 2.47
USP4-208ENST00000464168 DNAJC5GQ8N7S2 189 aa30.47■■■□□ 2.47
USP4-208ENST00000464168 NRXN2Q9P2S2 1712 aa30.47■■■□□ 2.47
USP4-208ENST00000464168 KDM2BQ8NHM5 1336 aa30.47■■■□□ 2.47
USP4-208ENST00000464168 AFDNP55196 1824 aaKnown RBP30.46■■■□□ 2.47
USP4-208ENST00000464168 HEG1Q9ULI3 1381 aa30.44■■■□□ 2.46
USP4-208ENST00000464168 A0A087WZG4 1122 aa30.44■■■□□ 2.46
USP4-208ENST00000464168 RASSF7Q02833 373 aa30.44■■■□□ 2.46
USP4-208ENST00000464168 BICDL1Q6ZP65 573 aa30.44■■■□□ 2.46
USP4-208ENST00000464168 C16orf71Q8IYS4 520 aaPredicted RBP30.44■■■□□ 2.46
USP4-208ENST00000464168 C2CD5Q86YS7 1000 aa30.43■■■□□ 2.46
USP4-208ENST00000464168 TTLL6Q8N841 843 aa30.43■■■□□ 2.46
USP4-208ENST00000464168 TEX13AQ9BXU3 409 aaPredicted RBP30.43■■■□□ 2.46
USP4-208ENST00000464168 RRAGCQ9HB90 399 aa30.43■■■□□ 2.46
USP4-208ENST00000464168 CARMIL3Q8ND23 1372 aa30.42■■■□□ 2.46
USP4-208ENST00000464168 SBF1O95248 1867 aa30.42■■■□□ 2.46
USP4-208ENST00000464168 PRELPP51888 382 aa30.41■■■□□ 2.46
USP4-208ENST00000464168 TBC1D9BQ66K14 1250 aa30.41■■■□□ 2.46
USP4-208ENST00000464168 PHACTR3Q96KR7 559 aa30.41■■■□□ 2.46
USP4-208ENST00000464168 H0YIN7 160 aa30.4■■■□□ 2.46
USP4-208ENST00000464168 CEMIPQ8WUJ3 1361 aa30.4■■■□□ 2.46
USP4-208ENST00000464168 FSTL1Q12841 308 aa30.39■■■□□ 2.46
USP4-208ENST00000464168 TBC1D2BQ9UPU7 963 aa30.39■■■□□ 2.46
USP4-208ENST00000464168 LMNB1P20700 586 aa30.38■■■□□ 2.45
USP4-208ENST00000464168 FMNL2Q96PY5 1086 aa30.38■■■□□ 2.45
USP4-208ENST00000464168 ZC3H4Q9UPT8 1303 aaKnown RBP30.38■■■□□ 2.45
USP4-208ENST00000464168 A1BGP04217 495 aa30.37■■■□□ 2.45
USP4-208ENST00000464168 PRKAR2BP31323 418 aa30.37■■■□□ 2.45
USP4-208ENST00000464168 IL6STP40189 918 aaPredicted RBP30.37■■■□□ 2.45
USP4-208ENST00000464168 RSPH6AQ9H0K4 717 aa30.37■■■□□ 2.45
USP4-208ENST00000464168 ZNF330Q9Y3S2 320 aaPredicted RBP30.37■■■□□ 2.45
USP4-208ENST00000464168 KCNQ3O43525 872 aa30.36■■■□□ 2.45
USP4-208ENST00000464168 BRIP1Q9BX63 1249 aa30.35■■■□□ 2.45
USP4-208ENST00000464168 SIPA1L3O60292 1781 aaPredicted RBP30.35■■■□□ 2.45
USP4-208ENST00000464168 DLEC1Q9Y238 1755 aa30.35■■■□□ 2.45
USP4-208ENST00000464168 NFKBIEO00221 500 aa30.34■■■□□ 2.45
USP4-208ENST00000464168 CFAP53Q96M91 514 aa30.34■■■□□ 2.45
USP4-208ENST00000464168 BTBD11A6QL63 1104 aa30.33■■■□□ 2.45
USP4-208ENST00000464168 HTRA3P83110 453 aa30.33■■■□□ 2.45
USP4-208ENST00000464168 PRR5LQ6MZQ0 368 aa30.33■■■□□ 2.45
USP4-208ENST00000464168 GLTPD2A6NH11 291 aa30.32■■■□□ 2.44
USP4-208ENST00000464168 CCDC24Q8N4L8 307 aa30.32■■■□□ 2.44
USP4-208ENST00000464168 CAMTA2O94983 1202 aa30.31■■■□□ 2.44
USP4-208ENST00000464168 PDE6BP35913 854 aa30.31■■■□□ 2.44
USP4-208ENST00000464168 ZNF622Q969S3 477 aaKnown RBP eCLIP30.31■■■□□ 2.44
USP4-208ENST00000464168 PDZRN3Q9UPQ7 1066 aa30.31■■■□□ 2.44
USP4-208ENST00000464168 TNRC6CQ9HCJ0 1690 aaKnown RBP30.3■■■□□ 2.44
USP4-208ENST00000464168 NPM2Q86SE8 214 aaKnown RBP30.29■■■□□ 2.44
USP4-208ENST00000464168 SETDB2Q96T68 719 aa30.29■■■□□ 2.44
USP4-208ENST00000464168 NUDCQ9Y266 331 aa30.29■■■□□ 2.44
USP4-208ENST00000464168 USP16Q9Y5T5 823 aa30.29■■■□□ 2.44
USP4-208ENST00000464168 SCN7AQ01118 1682 aa30.28■■■□□ 2.44
USP4-208ENST00000464168 SMC1BQ8NDV3 1235 aa30.28■■■□□ 2.44
USP4-208ENST00000464168 WDR90Q96KV7 1748 aa30.27■■■□□ 2.44
USP4-208ENST00000464168 VEGFAP15692 232 aaPredicted RBP30.27■■■□□ 2.44
USP4-208ENST00000464168 ANKRD31Q8N7Z5 1873 aa30.27■■■□□ 2.44
USP4-208ENST00000464168 C21orf2O43822 256 aa30.26■■■□□ 2.43
USP4-208ENST00000464168 U2AF1L5P0DN76 240 aaPredicted RBP30.26■■■□□ 2.43
USP4-208ENST00000464168 PPP2R1AP30153 589 aa30.26■■■□□ 2.43
USP4-208ENST00000464168 U2AF1Q01081 240 aaKnown RBP eCLIP30.26■■■□□ 2.43
USP4-208ENST00000464168 DZIP3Q86Y13 1208 aaKnown RBP30.26■■■□□ 2.43
USP4-208ENST00000464168 KLRG1Q96E93 195 aa30.26■■■□□ 2.43
USP4-208ENST00000464168 PRAMEF22A3QJZ6 481 aa30.25■■■□□ 2.43
USP4-208ENST00000464168 PIP4K2AP48426 406 aaPredicted RBP30.25■■■□□ 2.43
USP4-208ENST00000464168 MCM10Q7L590 875 aa30.25■■■□□ 2.43
USP4-208ENST00000464168 CNBD1Q8NA66 436 aa30.25■■■□□ 2.43
USP4-208ENST00000464168 ZNF219Q9P2Y4 722 aaPredicted RBP30.25■■■□□ 2.43
USP4-208ENST00000464168 RTF1Q92541 710 aaKnown RBP30.23■■■□□ 2.43
USP4-208ENST00000464168 PCNTO95613 3336 aa30.23■■■□□ 2.43
USP4-208ENST00000464168 JMYQ8N9B5 988 aa30.22■■■□□ 2.43
USP4-208ENST00000464168 POTECB2RU33 542 aa30.21■■■□□ 2.43
USP4-208ENST00000464168 SNRPA1P09661 255 aaKnown RBP30.21■■■□□ 2.43
USP4-208ENST00000464168 SRGNP10124 158 aa30.21■■■□□ 2.43
USP4-208ENST00000464168 NPHP1O15259 732 aa30.2■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms