RNA–Protein interactions for RNA: ENST00000461873.5

LDB1-203, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 478 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-203ENST00000461873 GPBP1L1Q9HC44 474 aaPredicted RBP11.74□□□□□ -0.53
LDB1-203ENST00000461873 PIM2Q9P1W9 311 aa11.74□□□□□ -0.53
LDB1-203ENST00000461873 MYH14Q7Z406 1995 aaKnown RBP11.74□□□□□ -0.53
LDB1-203ENST00000461873 HTATSF1O43719 755 aaKnown RBP11.73□□□□□ -0.53
LDB1-203ENST00000461873 COL3A1P02461 1466 aaPredicted RBP11.73□□□□□ -0.53
LDB1-203ENST00000461873 MRC1P22897 1456 aa11.73□□□□□ -0.53
LDB1-203ENST00000461873 COL15A1P39059 1388 aa11.73□□□□□ -0.53
LDB1-203ENST00000461873 FKBP8Q14318 412 aa11.73□□□□□ -0.53
LDB1-203ENST00000461873 ARHGAP27Q6ZUM4 889 aa11.73□□□□□ -0.53
LDB1-203ENST00000461873 PHACTR3Q96KR7 559 aa11.73□□□□□ -0.53
LDB1-203ENST00000461873 NARFQ9UHQ1 456 aa11.73□□□□□ -0.53
LDB1-203ENST00000461873 ZBTB1Q9Y2K1 713 aa11.73□□□□□ -0.53
LDB1-203ENST00000461873 C4AP0C0L4 1744 aa11.72□□□□□ -0.53
LDB1-203ENST00000461873 HEG1Q9ULI3 1381 aa11.72□□□□□ -0.53
LDB1-203ENST00000461873 SOS1Q07889 1333 aaPredicted RBP11.72□□□□□ -0.53
LDB1-203ENST00000461873 RALBP1Q15311 655 aa11.72□□□□□ -0.53
LDB1-203ENST00000461873 PNISRQ8TF01 805 aaKnown RBP11.72□□□□□ -0.53
LDB1-203ENST00000461873 ZNF496Q96IT1 587 aaPredicted RBP11.72□□□□□ -0.53
LDB1-203ENST00000461873 TJP1Q07157 1748 aa11.72□□□□□ -0.53
LDB1-203ENST00000461873 SNRPA1P09661 255 aaKnown RBP11.71□□□□□ -0.53
LDB1-203ENST00000461873 DPEP1P16444 411 aa11.71□□□□□ -0.53
LDB1-203ENST00000461873 HOXD11P31277 338 aaPredicted RBP11.71□□□□□ -0.53
LDB1-203ENST00000461873 NCBP3Q53F19 620 aaKnown RBP11.71□□□□□ -0.53
LDB1-203ENST00000461873 DALRD3Q5D0E6 543 aaKnown RBP11.71□□□□□ -0.53
LDB1-203ENST00000461873 BICDL1Q6ZP65 573 aa11.71□□□□□ -0.53
LDB1-203ENST00000461873 MCM10Q7L590 875 aa11.71□□□□□ -0.53
LDB1-203ENST00000461873 ZNF526Q8TF50 670 aaPredicted RBP11.71□□□□□ -0.53
LDB1-203ENST00000461873 ZEB1P37275 1124 aaPredicted RBP11.7□□□□□ -0.54
LDB1-203ENST00000461873 IL6STP40189 918 aaPredicted RBP11.7□□□□□ -0.54
LDB1-203ENST00000461873 DDX10Q13206 875 aaKnown RBP11.7□□□□□ -0.54
LDB1-203ENST00000461873 TAF7Q15545 349 aaPredicted RBP11.7□□□□□ -0.54
LDB1-203ENST00000461873 ZNF652Q9Y2D9 606 aa11.7□□□□□ -0.54
LDB1-203ENST00000461873 N4BP2Q86UW6 1770 aaPredicted RBP11.69□□□□□ -0.54
LDB1-203ENST00000461873 SENP3-EIF4A1A0A087X0R7 540 aa11.69□□□□□ -0.54
LDB1-203ENST00000461873 SERPINB2P05120 415 aa11.69□□□□□ -0.54
LDB1-203ENST00000461873 C1QTNF8P60827 252 aa11.69□□□□□ -0.54
LDB1-203ENST00000461873 WDR43Q15061 677 aaKnown RBP eCLIP11.69□□□□□ -0.54
LDB1-203ENST00000461873 SETDB2Q96T68 719 aa11.69□□□□□ -0.54
LDB1-203ENST00000461873 KCPQ6ZWJ8 1503 aa11.69□□□□□ -0.54
LDB1-203ENST00000461873 C10orf71Q711Q0 1435 aa11.69□□□□□ -0.54
LDB1-203ENST00000461873 H0YIN7 160 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 POLRMTO00411 1230 aaKnown RBP11.68□□□□□ -0.54
LDB1-203ENST00000461873 TM4SF1P30408 202 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 ST5P78524 1137 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 NFIXQ14938 502 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 RNF216Q9NWF9 866 aaPredicted RBP11.68□□□□□ -0.54
LDB1-203ENST00000461873 PDZRN3Q9UPQ7 1066 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 TBC1D2BQ9UPU7 963 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 PXDNLA1KZ92 1463 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 ADAMTS7Q9UKP4 1686 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 ATP10DQ9P241 1426 aa11.68□□□□□ -0.54
LDB1-203ENST00000461873 CEMIPQ8WUJ3 1361 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 KIF13BQ9NQT8 1826 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 UBR2Q8IWV8 1755 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 A1BGP04217 495 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 KCNA4P22459 653 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 GTF2E1P29083 439 aaPredicted RBP11.67□□□□□ -0.54
LDB1-203ENST00000461873 PDE6BP35913 854 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 EIF5P55010 431 aaKnown RBP11.67□□□□□ -0.54
LDB1-203ENST00000461873 DDR1Q08345 913 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 LMOD3Q0VAK6 560 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 DCTN1Q14203 1278 aa11.67□□□□□ -0.54
LDB1-203ENST00000461873 DZIP3Q86Y13 1208 aaKnown RBP11.67□□□□□ -0.54
LDB1-203ENST00000461873 NFE2L2Q16236 605 aa11.66□□□□□ -0.54
LDB1-203ENST00000461873 C2CD5Q86YS7 1000 aa11.66□□□□□ -0.54
LDB1-203ENST00000461873 C16orf71Q8IYS4 520 aaPredicted RBP11.66□□□□□ -0.54
LDB1-203ENST00000461873 ZNF622Q969S3 477 aaKnown RBP eCLIP11.66□□□□□ -0.54
LDB1-203ENST00000461873 MYBBP1AQ9BQG0 1328 aaKnown RBP11.65□□□□□ -0.54
LDB1-203ENST00000461873 KCNQ3O43525 872 aa11.65□□□□□ -0.54
LDB1-203ENST00000461873 CHRNA5P30532 468 aa11.65□□□□□ -0.54
LDB1-203ENST00000461873 TTLL6Q8N841 843 aa11.65□□□□□ -0.54
LDB1-203ENST00000461873 CNBD1Q8NA66 436 aa11.65□□□□□ -0.54
LDB1-203ENST00000461873 USP16Q9Y5T5 823 aa11.65□□□□□ -0.54
LDB1-203ENST00000461873 CARMIL3Q8ND23 1372 aa11.65□□□□□ -0.55
LDB1-203ENST00000461873 SIPA1L3O60292 1781 aaPredicted RBP11.64□□□□□ -0.55
LDB1-203ENST00000461873 RIPK4P57078 832 aa11.64□□□□□ -0.55
LDB1-203ENST00000461873 TBC1D9BQ66K14 1250 aa11.64□□□□□ -0.55
LDB1-203ENST00000461873 KIF6Q6ZMV9 814 aa11.64□□□□□ -0.55
LDB1-203ENST00000461873 MIS18AQ9NYP9 233 aa11.64□□□□□ -0.55
LDB1-203ENST00000461873 NPM3O75607 178 aaKnown RBP11.63□□□□□ -0.55
LDB1-203ENST00000461873 C9orf131Q5VYM1 1079 aa11.63□□□□□ -0.55
LDB1-203ENST00000461873 CLEC4GQ6UXB4 293 aa11.63□□□□□ -0.55
LDB1-203ENST00000461873 NBPF5PQ86XG9 351 aaPredicted RBP11.63□□□□□ -0.55
LDB1-203ENST00000461873 NGEFQ8N5V2 710 aa11.63□□□□□ -0.55
LDB1-203ENST00000461873 BRIP1Q9BX63 1249 aa11.63□□□□□ -0.55
LDB1-203ENST00000461873 RNF181Q9P0P0 153 aa11.63□□□□□ -0.55
LDB1-203ENST00000461873 TSPYL4Q9UJ04 414 aa11.63□□□□□ -0.55
LDB1-203ENST00000461873 KDM2BQ8NHM5 1336 aa11.62□□□□□ -0.55
LDB1-203ENST00000461873 PIP4K2AP48426 406 aaPredicted RBP11.62□□□□□ -0.55
LDB1-203ENST00000461873 NEUROD2Q15784 382 aa11.62□□□□□ -0.55
LDB1-203ENST00000461873 TPTE2Q6XPS3 522 aa11.62□□□□□ -0.55
LDB1-203ENST00000461873 AFDNP55196 1824 aaKnown RBP11.62□□□□□ -0.55
LDB1-203ENST00000461873 ARFGEF1Q9Y6D6 1849 aa11.61□□□□□ -0.55
LDB1-203ENST00000461873 DLG5Q8TDM6 1919 aa11.61□□□□□ -0.55
LDB1-203ENST00000461873 KCNA3P22001 575 aa11.61□□□□□ -0.55
LDB1-203ENST00000461873 CNKSR1Q969H4 720 aa11.61□□□□□ -0.55
LDB1-203ENST00000461873 PLEKHF1Q96S99 279 aa11.61□□□□□ -0.55
LDB1-203ENST00000461873 BCL2L12Q9HB09 334 aa11.61□□□□□ -0.55
LDB1-203ENST00000461873 NIP7Q9Y221 180 aaKnown RBP eCLIP11.61□□□□□ -0.55
LDB1-203ENST00000461873 RRP7AQ9Y3A4 280 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms