RNA–Protein interactions for RNA: ENST00000461394.5

MSH2-204, Transcript of mutS homolog 2, humanhuman

TSL 3

Gene MSH2, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-204ENST00000461394 PCDH11XQ9BZA7 1347 aa8.53□□□□□ -1.04
MSH2-204ENST00000461394 PCDH11YQ9BZA8 1340 aa8.53□□□□□ -1.04
MSH2-204ENST00000461394 NUTM2BA6NNL0 878 aaPredicted RBP8.52□□□□□ -1.05
MSH2-204ENST00000461394 NUTM2EB1AL46 878 aaPredicted RBP8.52□□□□□ -1.05
MSH2-204ENST00000461394 TOM1O60784 492 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 HOXB7P09629 217 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 FAM161AQ3B820 660 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 NUTM2AQ8IVF1 878 aaPredicted RBP8.52□□□□□ -1.05
MSH2-204ENST00000461394 DDX54Q8TDD1 881 aaKnown RBP8.52□□□□□ -1.05
MSH2-204ENST00000461394 CARD10Q9BWT7 1032 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 SLC52A2Q9HAB3 445 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 RGS12O14924 1447 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 KDM6AO15550 1401 aaPredicted RBP8.52□□□□□ -1.05
MSH2-204ENST00000461394 C5P01031 1676 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 PLCH1Q4KWH8 1693 aa8.52□□□□□ -1.05
MSH2-204ENST00000461394 PLEKHG2Q9H7P9 1386 aa8.51□□□□□ -1.05
MSH2-204ENST00000461394 SLC39A6Q13433 755 aa8.51□□□□□ -1.05
MSH2-204ENST00000461394 NKX1-1Q15270 411 aaPredicted RBP8.51□□□□□ -1.05
MSH2-204ENST00000461394 NFATC2IPQ8NCF5 419 aa8.51□□□□□ -1.05
MSH2-204ENST00000461394 BACH2Q9BYV9 841 aa8.51□□□□□ -1.05
MSH2-204ENST00000461394 RYDENQ9NUL5 291 aaKnown RBP8.51□□□□□ -1.05
MSH2-204ENST00000461394 CHPF2Q9P2E5 772 aa8.51□□□□□ -1.05
MSH2-204ENST00000461394 WNK3Q9BYP7 1800 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 UBAP1LF5GYI3 381 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 RIOK3O14730 519 aaKnown RBP8.5□□□□□ -1.05
MSH2-204ENST00000461394 CYP27B1O15528 508 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 ABCB7O75027 752 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 ADAMTS2O95450 1211 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 ANKRD45Q5TZF3 282 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 ZNF790Q6PG37 636 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 RNF25Q96BH1 459 aaPredicted RBP8.5□□□□□ -1.05
MSH2-204ENST00000461394 GCC1Q96CN9 775 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 MEIS3Q99687 375 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 SHANK3Q9BYB0 1731 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 PHAXQ9H814 394 aaKnown RBP8.5□□□□□ -1.05
MSH2-204ENST00000461394 DBF4Q9UBU7 674 aaPredicted RBP8.5□□□□□ -1.05
MSH2-204ENST00000461394 LAMB4A4D0S4 1761 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 COL16A1Q07092 1604 aaPredicted RBP8.5□□□□□ -1.05
MSH2-204ENST00000461394 PXDNLA1KZ92 1463 aa8.5□□□□□ -1.05
MSH2-204ENST00000461394 HMMRO75330 724 aa8.49□□□□□ -1.05
MSH2-204ENST00000461394 GIGYF1O75420 1035 aaPredicted RBP8.49□□□□□ -1.05
MSH2-204ENST00000461394 DDX58O95786 925 aaKnown RBP8.49□□□□□ -1.05
MSH2-204ENST00000461394 ANXA1P04083 346 aa8.49□□□□□ -1.05
MSH2-204ENST00000461394 GNAI3P08754 354 aa8.49□□□□□ -1.05
MSH2-204ENST00000461394 FMNL2Q96PY5 1086 aa8.49□□□□□ -1.05
MSH2-204ENST00000461394 LNPKQ9C0E8 428 aa8.49□□□□□ -1.05
MSH2-204ENST00000461394 SRCIN1Q9C0H9 1055 aa8.49□□□□□ -1.05
MSH2-204ENST00000461394 CCDC9Q9Y3X0 531 aaKnown RBP8.49□□□□□ -1.05
MSH2-204ENST00000461394 MRC1P22897 1456 aa8.49□□□□□ -1.05
MSH2-204ENST00000461394 A0A0G2JS52 829 aa8.48□□□□□ -1.05
MSH2-204ENST00000461394 APBB1O00213 710 aa8.48□□□□□ -1.05
MSH2-204ENST00000461394 GNAI2P04899 355 aa8.48□□□□□ -1.05
MSH2-204ENST00000461394 MYL6BP14649 208 aa8.48□□□□□ -1.05
MSH2-204ENST00000461394 AIMP1Q12904 312 aaKnown RBP8.48□□□□□ -1.05
MSH2-204ENST00000461394 RPAP2Q8IXW5 612 aaPredicted RBP8.48□□□□□ -1.05
MSH2-204ENST00000461394 SMC5Q8IY18 1101 aa8.48□□□□□ -1.05
MSH2-204ENST00000461394 ANKRD44Q8N8A2 993 aa8.48□□□□□ -1.05
MSH2-204ENST00000461394 HYPKQ9NX55 129 aa8.48□□□□□ -1.05
MSH2-204ENST00000461394 AFDNP55196 1824 aaKnown RBP8.47□□□□□ -1.05
MSH2-204ENST00000461394 PRAMEF22A3QJZ6 481 aa8.47□□□□□ -1.05
MSH2-204ENST00000461394 SNRPA1P09661 255 aaKnown RBP8.47□□□□□ -1.05
MSH2-204ENST00000461394 UBTFL1P0CB47 393 aaPredicted RBP8.47□□□□□ -1.05
MSH2-204ENST00000461394 NUCB1Q02818 461 aa8.47□□□□□ -1.05
MSH2-204ENST00000461394 CHD1LQ86WJ1 897 aa8.47□□□□□ -1.05
MSH2-204ENST00000461394 DNAAF4Q8WXU2 420 aa8.47□□□□□ -1.05
MSH2-204ENST00000461394 TMOD3Q9NYL9 352 aa8.47□□□□□ -1.05
MSH2-204ENST00000461394 KAT6BQ8WYB5 2073 aa8.46□□□□□ -1.05
MSH2-204ENST00000461394 ITGB4P16144 1822 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 PI4KAP2A4QPH2 592 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 ERVV-2B6SEH9 535 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 CEP85Q6P2H3 762 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 RIC3Q7Z5B4 369 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 PI4KAP1Q8N8J0 262 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 ZNF496Q96IT1 587 aaPredicted RBP8.46□□□□□ -1.06
MSH2-204ENST00000461394 UPF2Q9HAU5 1272 aaKnown RBP8.46□□□□□ -1.06
MSH2-204ENST00000461394 DDX21Q9NR30 783 aaKnown RBP eCLIP8.46□□□□□ -1.06
MSH2-204ENST00000461394 MAP3K2Q9Y2U5 619 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 NRAPQ86VF7 1730 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 TOGARAM1Q9Y4F4 1720 aa8.46□□□□□ -1.06
MSH2-204ENST00000461394 PAPPAQ13219 1627 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 EXOC5O00471 708 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 STK25O00506 426 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 NEXNQ0ZGT2 675 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 PROSER3Q2NL68 480 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 C8orf34Q49A92 452 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 KSR2Q6VAB6 950 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 SIRT2Q8IXJ6 389 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 C9orf78Q9NZ63 289 aaPredicted RBP8.45□□□□□ -1.06
MSH2-204ENST00000461394 LRRFIP2Q9Y608 721 aaKnown RBP8.45□□□□□ -1.06
MSH2-204ENST00000461394 NWD2Q9ULI1 1742 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 UBR2Q8IWV8 1755 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 ATP10DQ9P241 1426 aa8.45□□□□□ -1.06
MSH2-204ENST00000461394 DOT1LQ8TEK3 1739 aa8.44□□□□□ -1.06
MSH2-204ENST00000461394 PTCD1O75127 700 aaKnown RBP8.44□□□□□ -1.06
MSH2-204ENST00000461394 XAGE3Q8WTP9 111 aa8.44□□□□□ -1.06
MSH2-204ENST00000461394 SYTL4Q96C24 671 aaPredicted RBP8.44□□□□□ -1.06
MSH2-204ENST00000461394 DDRGK1Q96HY6 314 aa8.44□□□□□ -1.06
MSH2-204ENST00000461394 DCTPP1Q9H773 170 aa8.44□□□□□ -1.06
MSH2-204ENST00000461394 HDAC5Q9UQL6 1122 aa8.44□□□□□ -1.06
MSH2-204ENST00000461394 ADCY9O60503 1353 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms