RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SLC39A6Q13433 755 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 WASHC4Q2M389 1173 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 MYD88Q99836 296 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 ISY1Q9ULR0 285 aaKnown RBP13.94□□□□□ -0.18
NPHP4-204ENST00000460696 KIF3AQ9Y496 699 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 ESPNB1AK53 854 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 APPP05067 770 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 ZGPATQ8N5A5 531 aaKnown RBP13.94□□□□□ -0.18
NPHP4-204ENST00000460696 USP26Q9BXU7 913 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 CCDC85AQ96PX6 553 aaPredicted RBP13.94□□□□□ -0.18
NPHP4-204ENST00000460696 TMX3Q96JJ7 454 aa13.93□□□□□ -0.18
NPHP4-204ENST00000460696 ESYT1Q9BSJ8 1104 aa13.93□□□□□ -0.18
NPHP4-204ENST00000460696 QTRT2Q9H974 415 aaKnown RBP13.93□□□□□ -0.18
NPHP4-204ENST00000460696 PDRG1Q9NUG6 133 aa13.93□□□□□ -0.18
NPHP4-204ENST00000460696 PNMA6EA0A0J9YXQ4 647 aa13.93□□□□□ -0.18
NPHP4-204ENST00000460696 GSPT1P15170 499 aaKnown RBP13.93□□□□□ -0.18
NPHP4-204ENST00000460696 PIP4K2AP48426 406 aaPredicted RBP13.93□□□□□ -0.18
NPHP4-204ENST00000460696 CCDC83Q8IWF9 413 aa13.93□□□□□ -0.18
NPHP4-204ENST00000460696 ROBO2Q9HCK4 1378 aa13.93□□□□□ -0.18
NPHP4-204ENST00000460696 FERMT3Q86UX7 667 aa13.92□□□□□ -0.18
NPHP4-204ENST00000460696 SIRT2Q8IXJ6 389 aa13.92□□□□□ -0.18
NPHP4-204ENST00000460696 LGR6Q9HBX8 967 aa13.92□□□□□ -0.18
NPHP4-204ENST00000460696 INO80Q9ULG1 1556 aaPredicted RBP13.92□□□□□ -0.18
NPHP4-204ENST00000460696 ARHGAP31Q2M1Z3 1444 aa13.92□□□□□ -0.18
NPHP4-204ENST00000460696 CCDC173Q0VFZ6 552 aa13.92□□□□□ -0.18
NPHP4-204ENST00000460696 BICDL1Q6ZP65 573 aa13.92□□□□□ -0.18
NPHP4-204ENST00000460696 LARP1Q6PKG0 1096 aaKnown RBP13.92□□□□□ -0.18
NPHP4-204ENST00000460696 BLOC1S2Q6QNY1 142 aa13.92□□□□□ -0.18
NPHP4-204ENST00000460696 RBM27Q9P2N5 1060 aaKnown RBP13.92□□□□□ -0.18
NPHP4-204ENST00000460696 PA2G4Q9UQ80 394 aaKnown RBP13.92□□□□□ -0.18
NPHP4-204ENST00000460696 GOLGA6L6A8MZA4 724 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 HIP1O00291 1037 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 ATP5J2-PTCD1G3V325 749 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 RAB3GAP1Q15042 981 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 LARP1BQ659C4 914 aaKnown RBP13.91□□□□□ -0.18
NPHP4-204ENST00000460696 ECHDC1Q9NTX5 307 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 SBNO1A3KN83 1393 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 QRICH2Q9H0J4 1663 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 CEBPZQ03701 1054 aaKnown RBP13.91□□□□□ -0.18
NPHP4-204ENST00000460696 CWF19L2Q2TBE0 894 aaKnown RBP13.91□□□□□ -0.18
NPHP4-204ENST00000460696 BRINP3Q76B58 766 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 FBXW7Q969H0 707 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 TSPY26PQ9H489 355 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 MAP3K5Q99683 1374 aa13.91□□□□□ -0.18
NPHP4-204ENST00000460696 ZNF853P0CG23 659 aa13.9□□□□□ -0.18
NPHP4-204ENST00000460696 TULP4Q9NRJ4 1543 aa13.9□□□□□ -0.18
NPHP4-204ENST00000460696 IQGAP1P46940 1657 aa13.9□□□□□ -0.18
NPHP4-204ENST00000460696 CPLX1O14810 134 aa13.9□□□□□ -0.18
NPHP4-204ENST00000460696 DDB1Q16531 1140 aa13.9□□□□□ -0.18
NPHP4-204ENST00000460696 HYPKQ9NX55 129 aa13.9□□□□□ -0.18
NPHP4-204ENST00000460696 HSP90AA2PQ14568 343 aaPredicted RBP13.9□□□□□ -0.19
NPHP4-204ENST00000460696 IL17REQ8NFR9 667 aa13.9□□□□□ -0.19
NPHP4-204ENST00000460696 SIRT1Q96EB6 747 aa13.9□□□□□ -0.19
NPHP4-204ENST00000460696 KIDINS220Q9ULH0 1771 aa13.89□□□□□ -0.19
NPHP4-204ENST00000460696 FAM135BQ49AJ0 1406 aa13.89□□□□□ -0.19
NPHP4-204ENST00000460696 BECN2A8MW95 431 aa13.89□□□□□ -0.19
NPHP4-204ENST00000460696 NRDCO43847 1150 aa13.89□□□□□ -0.19
NPHP4-204ENST00000460696 NBPF6Q5VWK0 638 aa13.89□□□□□ -0.19
NPHP4-204ENST00000460696 NBPF4Q96M43 638 aa13.89□□□□□ -0.19
NPHP4-204ENST00000460696 R3HCC1Q9Y3T6 440 aaKnown RBP13.89□□□□□ -0.19
NPHP4-204ENST00000460696 AATKQ6ZMQ8 1374 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 ATP7BP35670 1465 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 KDM4AO75164 1064 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 KLHL40Q2TBA0 621 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 LRRFIP1Q32MZ4 808 aaKnown RBP13.88□□□□□ -0.19
NPHP4-204ENST00000460696 AKAP4Q5JQC9 854 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 IP6K1Q92551 441 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 RTL1A6NKG5 1358 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 GOLGA6L19H0YKK7 550 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 PDCP20941 246 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 UBE3BQ7Z3V4 1068 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 A0A087WZG4 1122 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 CHMLP26374 656 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 TCEANC2Q96MN5 208 aa13.88□□□□□ -0.19
NPHP4-204ENST00000460696 NBPF7P0C2Y1 421 aaPredicted RBP13.87□□□□□ -0.19
NPHP4-204ENST00000460696 FKBP4Q02790 459 aaKnown RBP eCLIP13.87□□□□□ -0.19
NPHP4-204ENST00000460696 LMTK2Q8IWU2 1503 aa13.87□□□□□ -0.19
NPHP4-204ENST00000460696 CD2BP2O95400 341 aaKnown RBP13.87□□□□□ -0.19
NPHP4-204ENST00000460696 COPS6Q7L5N1 327 aa13.87□□□□□ -0.19
NPHP4-204ENST00000460696 LIMCH1Q9UPQ0 1083 aa13.87□□□□□ -0.19
NPHP4-204ENST00000460696 SETBP1Q9Y6X0 1596 aa13.87□□□□□ -0.19
NPHP4-204ENST00000460696 DTNBO60941 627 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 TRDNQ13061 729 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 DDX11Q96FC9 970 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 SOS1Q07889 1333 aaPredicted RBP13.86□□□□□ -0.19
NPHP4-204ENST00000460696 A2ML1A8K2U0 1454 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 KCNQ3O43525 872 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 BRPF1P55201 1214 aaPredicted RBP13.86□□□□□ -0.19
NPHP4-204ENST00000460696 RALYLQ86SE5 291 aaKnown RBP13.86□□□□□ -0.19
NPHP4-204ENST00000460696 XAGE3Q8WTP9 111 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 KSR2Q6VAB6 950 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 NFATC2IPQ8NCF5 419 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 FAM13BQ9NYF5 915 aa13.86□□□□□ -0.19
NPHP4-204ENST00000460696 KIAA0232Q92628 1395 aa13.85□□□□□ -0.19
NPHP4-204ENST00000460696 ANTXR1Q9H6X2 564 aa13.85□□□□□ -0.19
NPHP4-204ENST00000460696 SASS6Q6UVJ0 657 aa13.85□□□□□ -0.19
NPHP4-204ENST00000460696 ZBTB3Q9H5J0 574 aa13.85□□□□□ -0.19
NPHP4-204ENST00000460696 GRM8O00222 908 aa13.85□□□□□ -0.19
NPHP4-204ENST00000460696 ALKQ9UM73 1620 aa13.85□□□□□ -0.19
NPHP4-204ENST00000460696 KRT85P78386 507 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms