RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 DACH1Q9UI36 760 aa17.37■□□□□ 0.37
PTPRU-205ENST00000460170 HMGB1P09429 215 aaKnown RBP17.37■□□□□ 0.37
PTPRU-205ENST00000460170 SMARCE1Q969G3 411 aa17.37■□□□□ 0.37
PTPRU-205ENST00000460170 AIDAQ96BJ3 306 aa17.37■□□□□ 0.37
PTPRU-205ENST00000460170 UBAC1Q9BSL1 405 aa17.37■□□□□ 0.37
PTPRU-205ENST00000460170 ZMYM4Q5VZL5 1548 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 ANXA1P04083 346 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 CCDC112Q8NEF3 446 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 CTDP1Q9Y5B0 961 aaPredicted RBP17.36■□□□□ 0.37
PTPRU-205ENST00000460170 PBRM1Q86U86 1689 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 MAST1Q9Y2H9 1570 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 DCTPP1Q9H773 170 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 NPATQ14207 1427 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 NAP1L1P55209 391 aaKnown RBP17.36■□□□□ 0.37
PTPRU-205ENST00000460170 FILIP1Q7Z7B0 1213 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 LARP6Q9BRS8 491 aaKnown RBP17.36■□□□□ 0.37
PTPRU-205ENST00000460170 GCC2Q8IWJ2 1684 aa17.36■□□□□ 0.37
PTPRU-205ENST00000460170 BRPF1P55201 1214 aaPredicted RBP17.36■□□□□ 0.37
PTPRU-205ENST00000460170 UQCRHLA0A096LP55 91 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 UQCRHP07919 91 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 GDPD2Q9HCC8 539 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 STX6O43752 255 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 TMX3Q96JJ7 454 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 ACBD3Q9H3P7 528 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 TMOD3Q9NYL9 352 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 LRP2BPQ9P2M1 347 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 SEC24BO95487 1268 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 ATP8B2P98198 1209 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 KRT28Q7Z3Y7 464 aa17.35■□□□□ 0.37
PTPRU-205ENST00000460170 C16orf71Q8IYS4 520 aaPredicted RBP17.34■□□□□ 0.37
PTPRU-205ENST00000460170 HSP90B2PQ58FF3 399 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 TTLL5Q6EMB2 1281 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 IFNL2Q8IZJ0 200 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 WASF1Q92558 559 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 ABCC1P33527 1531 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 CBFA2T2O43439 604 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 NOL7Q9UMY1 257 aaKnown RBP17.34■□□□□ 0.37
PTPRU-205ENST00000460170 KDM2BQ8NHM5 1336 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 IGHMBP2P38935 993 aaKnown RBP17.34■□□□□ 0.37
PTPRU-205ENST00000460170 ANKRD24Q8TF21 1146 aa17.34■□□□□ 0.37
PTPRU-205ENST00000460170 IFIT5Q13325 482 aaKnown RBP17.33■□□□□ 0.37
PTPRU-205ENST00000460170 MTHFSDQ2M296 383 aaKnown RBP17.33■□□□□ 0.37
PTPRU-205ENST00000460170 ESYT1Q9BSJ8 1104 aa17.33■□□□□ 0.37
PTPRU-205ENST00000460170 RAI14Q9P0K7 980 aa17.33■□□□□ 0.37
PTPRU-205ENST00000460170 CHPF2Q9P2E5 772 aa17.33■□□□□ 0.36
PTPRU-205ENST00000460170 MAGEC2Q9UBF1 373 aaPredicted RBP17.33■□□□□ 0.36
PTPRU-205ENST00000460170 BLMP54132 1417 aaPredicted RBP17.33■□□□□ 0.36
PTPRU-205ENST00000460170 GJB2P29033 226 aa17.33■□□□□ 0.36
PTPRU-205ENST00000460170 OFD1O75665 1012 aa17.33■□□□□ 0.36
PTPRU-205ENST00000460170 YTHDC2Q9H6S0 1430 aaKnown RBP17.33■□□□□ 0.36
PTPRU-205ENST00000460170 ANAPC15P60006 121 aa17.32■□□□□ 0.36
PTPRU-205ENST00000460170 CEP85Q6P2H3 762 aa17.32■□□□□ 0.36
PTPRU-205ENST00000460170 CCDC43Q96MW1 224 aaKnown RBP17.32■□□□□ 0.36
PTPRU-205ENST00000460170 SMTNL1A8MU46 457 aa17.32■□□□□ 0.36
PTPRU-205ENST00000460170 UBE3BQ7Z3V4 1068 aa17.32■□□□□ 0.36
PTPRU-205ENST00000460170 CDK5RAP3Q96JB5 506 aa17.32■□□□□ 0.36
PTPRU-205ENST00000460170 DMRT2Q9Y5R5 561 aa17.32■□□□□ 0.36
PTPRU-205ENST00000460170 PPFIBP1Q86W92 1011 aa17.32■□□□□ 0.36
PTPRU-205ENST00000460170 KRT24Q2M2I5 525 aa17.31■□□□□ 0.36
PTPRU-205ENST00000460170 FLT4P35916 1363 aa17.31■□□□□ 0.36
PTPRU-205ENST00000460170 EPS15P42566 896 aa17.31■□□□□ 0.36
PTPRU-205ENST00000460170 C8orf76Q96K31 380 aa17.31■□□□□ 0.36
PTPRU-205ENST00000460170 SAMD1Q6SPF0 538 aaPredicted RBP17.3■□□□□ 0.36
PTPRU-205ENST00000460170 ABCF2Q9UG63 623 aa17.3■□□□□ 0.36
PTPRU-205ENST00000460170 USP25Q9UHP3 1055 aa17.3■□□□□ 0.36
PTPRU-205ENST00000460170 ATP5J2-PTCD1G3V325 749 aa17.3■□□□□ 0.36
PTPRU-205ENST00000460170 ZBTB7BO15156 539 aaPredicted RBP17.3■□□□□ 0.36
PTPRU-205ENST00000460170 IKQ13123 557 aaPredicted RBP17.3■□□□□ 0.36
PTPRU-205ENST00000460170 RUFY1Q96T51 708 aa17.3■□□□□ 0.36
PTPRU-205ENST00000460170 ZBTB3Q9H5J0 574 aa17.3■□□□□ 0.36
PTPRU-205ENST00000460170 ANO10Q9NW15 660 aa17.3■□□□□ 0.36
PTPRU-205ENST00000460170 SNRPA1P09661 255 aaKnown RBP17.29■□□□□ 0.36
PTPRU-205ENST00000460170 CAGE1Q8TC20 777 aa17.29■□□□□ 0.36
PTPRU-205ENST00000460170 HMG20BQ9P0W2 317 aa17.29■□□□□ 0.36
PTPRU-205ENST00000460170 PLEKHM2Q8IWE5 1019 aa17.29■□□□□ 0.36
PTPRU-205ENST00000460170 DDX19AQ9NUU7 478 aaKnown RBP17.29■□□□□ 0.36
PTPRU-205ENST00000460170 RBM27Q9P2N5 1060 aaKnown RBP17.29■□□□□ 0.36
PTPRU-205ENST00000460170 ALDH1L1O75891 902 aa17.29■□□□□ 0.36
PTPRU-205ENST00000460170 NCBP3Q53F19 620 aaKnown RBP17.29■□□□□ 0.36
PTPRU-205ENST00000460170 ANKRD13DQ6ZTN6 518 aa17.29■□□□□ 0.36
PTPRU-205ENST00000460170 STIM1Q13586 685 aa17.29■□□□□ 0.36
PTPRU-205ENST00000460170 GOLIM4O00461 696 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 HSP90AB3PQ58FF7 597 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 TFIP11Q9UBB9 837 aaKnown RBP17.28■□□□□ 0.36
PTPRU-205ENST00000460170 ZNF213O14771 459 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 UBE2HP62256 183 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 GUCY1B3Q02153 619 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 NAPBQ9H115 298 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 ATP7AQ04656 1500 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 NUTM2BA6NNL0 878 aaPredicted RBP17.28■□□□□ 0.36
PTPRU-205ENST00000460170 NUTM2EB1AL46 878 aaPredicted RBP17.28■□□□□ 0.36
PTPRU-205ENST00000460170 ZSCAN23Q3MJ62 389 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 NUTM2AQ8IVF1 878 aaPredicted RBP17.28■□□□□ 0.36
PTPRU-205ENST00000460170 CKAP2LQ8IYA6 745 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 AK7Q96M32 723 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 NEK1Q96PY6 1258 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 CWC25Q9NXE8 425 aaPredicted RBP17.28■□□□□ 0.36
PTPRU-205ENST00000460170 TRIM35Q9UPQ4 493 aa17.28■□□□□ 0.36
PTPRU-205ENST00000460170 AKAP4Q5JQC9 854 aa17.27■□□□□ 0.36
PTPRU-205ENST00000460170 ZNHIT6Q9NWK9 470 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms