RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 SIPA1L3O60292 1781 aaPredicted RBP24.61■■□□□ 1.53
HOXD3-204ENST00000459979 HTATSF1O43719 755 aaKnown RBP24.6■■□□□ 1.53
HOXD3-204ENST00000459979 HSPA6P17066 643 aa24.6■■□□□ 1.53
HOXD3-204ENST00000459979 FKBP8Q14318 412 aa24.6■■□□□ 1.53
HOXD3-204ENST00000459979 PLEKHF1Q96S99 279 aa24.6■■□□□ 1.53
HOXD3-204ENST00000459979 PNNQ9H307 717 aaKnown RBP24.6■■□□□ 1.53
HOXD3-204ENST00000459979 CEP350Q5VT06 3117 aa24.59■■□□□ 1.53
HOXD3-204ENST00000459979 DDR1Q08345 913 aa24.59■■□□□ 1.53
HOXD3-204ENST00000459979 TEFQ10587 303 aa24.59■■□□□ 1.53
HOXD3-204ENST00000459979 USP42Q9H9J4 1324 aaKnown RBP24.59■■□□□ 1.53
HOXD3-204ENST00000459979 ZNF316A6NFI3 1004 aaPredicted RBP24.58■■□□□ 1.53
HOXD3-204ENST00000459979 INTS5Q6P9B9 1019 aaKnown RBP24.58■■□□□ 1.53
HOXD3-204ENST00000459979 DNAJC10Q8IXB1 793 aa24.58■■□□□ 1.53
HOXD3-204ENST00000459979 UBR2Q8IWV8 1755 aa24.57■■□□□ 1.52
HOXD3-204ENST00000459979 KCPQ6ZWJ8 1503 aa24.57■■□□□ 1.52
HOXD3-204ENST00000459979 KCNA3P22001 575 aa24.57■■□□□ 1.52
HOXD3-204ENST00000459979 SLC39A6Q13433 755 aa24.57■■□□□ 1.52
HOXD3-204ENST00000459979 VSIG10Q8N0Z9 540 aa24.57■■□□□ 1.52
HOXD3-204ENST00000459979 NEFMP07197 916 aa24.56■■□□□ 1.52
HOXD3-204ENST00000459979 RTF1Q92541 710 aaKnown RBP24.55■■□□□ 1.52
HOXD3-204ENST00000459979 AFDNP55196 1824 aaKnown RBP24.55■■□□□ 1.52
HOXD3-204ENST00000459979 CHRNA5P30532 468 aa24.53■■□□□ 1.52
HOXD3-204ENST00000459979 ZNF790Q6PG37 636 aa24.53■■□□□ 1.52
HOXD3-204ENST00000459979 USPL1Q5W0Q7 1092 aa24.52■■□□□ 1.52
HOXD3-204ENST00000459979 TTC5Q8N0Z6 440 aa24.52■■□□□ 1.52
HOXD3-204ENST00000459979 DLG5Q8TDM6 1919 aa24.52■■□□□ 1.52
HOXD3-204ENST00000459979 POLRMTO00411 1230 aaKnown RBP24.51■■□□□ 1.51
HOXD3-204ENST00000459979 NMRK2Q9NPI5 230 aa24.51■■□□□ 1.51
HOXD3-204ENST00000459979 PIM2Q9P1W9 311 aa24.51■■□□□ 1.51
HOXD3-204ENST00000459979 SOS1Q07889 1333 aaPredicted RBP24.51■■□□□ 1.51
HOXD3-204ENST00000459979 SBF1O95248 1867 aa24.51■■□□□ 1.51
HOXD3-204ENST00000459979 NFE2L2Q16236 605 aa24.5■■□□□ 1.51
HOXD3-204ENST00000459979 C9orf131Q5VYM1 1079 aa24.5■■□□□ 1.51
HOXD3-204ENST00000459979 MCM10Q7L590 875 aa24.5■■□□□ 1.51
HOXD3-204ENST00000459979 ZPR1O75312 459 aa24.49■■□□□ 1.51
HOXD3-204ENST00000459979 CYP19A1P11511 503 aaPredicted RBP24.49■■□□□ 1.51
HOXD3-204ENST00000459979 TM4SF1P30408 202 aa24.49■■□□□ 1.51
HOXD3-204ENST00000459979 ZNF496Q96IT1 587 aaPredicted RBP24.49■■□□□ 1.51
HOXD3-204ENST00000459979 MAPK8IP3Q9UPT6 1336 aa24.49■■□□□ 1.51
HOXD3-204ENST00000459979 BTBD11A6QL63 1104 aa24.48■■□□□ 1.51
HOXD3-204ENST00000459979 DALRD3Q5D0E6 543 aaKnown RBP24.48■■□□□ 1.51
HOXD3-204ENST00000459979 ZBTB1Q9Y2K1 713 aa24.48■■□□□ 1.51
HOXD3-204ENST00000459979 COL15A1P39059 1388 aa24.47■■□□□ 1.51
HOXD3-204ENST00000459979 HEG1Q9ULI3 1381 aa24.47■■□□□ 1.51
HOXD3-204ENST00000459979 TEX13AQ9BXU3 409 aaPredicted RBP24.47■■□□□ 1.51
HOXD3-204ENST00000459979 DCTN1Q14203 1278 aa24.46■■□□□ 1.51
HOXD3-204ENST00000459979 FMNL2Q96PY5 1086 aa24.46■■□□□ 1.51
HOXD3-204ENST00000459979 NRXN2Q9P2S2 1712 aa24.46■■□□□ 1.51
HOXD3-204ENST00000459979 TAF7Q15545 349 aaPredicted RBP24.45■■□□□ 1.5
HOXD3-204ENST00000459979 DLEC1Q9Y238 1755 aa24.44■■□□□ 1.5
HOXD3-204ENST00000459979 TOMM70O94826 608 aa24.44■■□□□ 1.5
HOXD3-204ENST00000459979 NFIXQ14938 502 aa24.44■■□□□ 1.5
HOXD3-204ENST00000459979 KCNQ3O43525 872 aa24.43■■□□□ 1.5
HOXD3-204ENST00000459979 STARD3NLO95772 234 aa24.43■■□□□ 1.5
HOXD3-204ENST00000459979 WDR43Q15061 677 aaKnown RBP eCLIP24.43■■□□□ 1.5
HOXD3-204ENST00000459979 IFFO2Q5TF58 517 aa24.43■■□□□ 1.5
HOXD3-204ENST00000459979 BCL2L12Q9HB09 334 aa24.43■■□□□ 1.5
HOXD3-204ENST00000459979 RNF181Q9P0P0 153 aa24.43■■□□□ 1.5
HOXD3-204ENST00000459979 NARFQ9UHQ1 456 aa24.43■■□□□ 1.5
HOXD3-204ENST00000459979 CANXP27824 592 aaKnown RBP24.42■■□□□ 1.5
HOXD3-204ENST00000459979 CCDC88AQ3V6T2 1871 aa24.42■■□□□ 1.5
HOXD3-204ENST00000459979 ADAMTS8Q9UP79 889 aa24.41■■□□□ 1.5
HOXD3-204ENST00000459979 TMPOP42166 694 aaKnown RBP24.4■■□□□ 1.5
HOXD3-204ENST00000459979 RASSF7Q02833 373 aa24.4■■□□□ 1.5
HOXD3-204ENST00000459979 PNISRQ8TF01 805 aaKnown RBP24.4■■□□□ 1.5
HOXD3-204ENST00000459979 RUNDC1Q96C34 613 aa24.4■■□□□ 1.5
HOXD3-204ENST00000459979 WDR90Q96KV7 1748 aa24.4■■□□□ 1.5
HOXD3-204ENST00000459979 APLP1P51693 650 aa24.39■■□□□ 1.49
HOXD3-204ENST00000459979 RIPK4P57078 832 aa24.39■■□□□ 1.49
HOXD3-204ENST00000459979 TNRC6CQ9HCJ0 1690 aaKnown RBP24.38■■□□□ 1.49
HOXD3-204ENST00000459979 SERPINB2P05120 415 aa24.38■■□□□ 1.49
HOXD3-204ENST00000459979 ANKRD31Q8N7Z5 1873 aa24.38■■□□□ 1.49
HOXD3-204ENST00000459979 CARMIL3Q8ND23 1372 aa24.38■■□□□ 1.49
HOXD3-204ENST00000459979 EIF5P55010 431 aaKnown RBP24.37■■□□□ 1.49
HOXD3-204ENST00000459979 BICDL1Q6ZP65 573 aa24.37■■□□□ 1.49
HOXD3-204ENST00000459979 KDM3BQ7LBC6 1761 aa24.37■■□□□ 1.49
HOXD3-204ENST00000459979 SNRPA1P09661 255 aaKnown RBP24.36■■□□□ 1.49
HOXD3-204ENST00000459979 LMOD3Q0VAK6 560 aa24.36■■□□□ 1.49
HOXD3-204ENST00000459979 SCN7AQ01118 1682 aa24.36■■□□□ 1.49
HOXD3-204ENST00000459979 CCDC146Q8IYE0 955 aa24.35■■□□□ 1.49
HOXD3-204ENST00000459979 C16orf71Q8IYS4 520 aaPredicted RBP24.35■■□□□ 1.49
HOXD3-204ENST00000459979 THUMPD2Q9BTF0 503 aaKnown RBP24.35■■□□□ 1.49
HOXD3-204ENST00000459979 RRAGCQ9HB90 399 aa24.35■■□□□ 1.49
HOXD3-204ENST00000459979 KDM2BQ8NHM5 1336 aa24.35■■□□□ 1.49
HOXD3-204ENST00000459979 IL6STP40189 918 aaPredicted RBP24.34■■□□□ 1.49
HOXD3-204ENST00000459979 RBM46Q8TBY0 533 aaKnown RBP24.34■■□□□ 1.49
HOXD3-204ENST00000459979 BABAM1Q9NWV8 329 aa24.34■■□□□ 1.49
HOXD3-204ENST00000459979 ZNF330Q9Y3S2 320 aaPredicted RBP24.34■■□□□ 1.49
HOXD3-204ENST00000459979 TIAM2Q8IVF5 1701 aa24.34■■□□□ 1.49
HOXD3-204ENST00000459979 HTRA3P83110 453 aa24.33■■□□□ 1.49
HOXD3-204ENST00000459979 C2CD5Q86YS7 1000 aa24.33■■□□□ 1.49
HOXD3-204ENST00000459979 DNAJC5GQ8N7S2 189 aa24.33■■□□□ 1.49
HOXD3-204ENST00000459979 MIS18AQ9NYP9 233 aa24.33■■□□□ 1.49
HOXD3-204ENST00000459979 USP16Q9Y5T5 823 aa24.33■■□□□ 1.49
HOXD3-204ENST00000459979 COL11A2P13942 1736 aaPredicted RBP24.32■■□□□ 1.48
HOXD3-204ENST00000459979 A0A087WZG4 1122 aa24.32■■□□□ 1.48
HOXD3-204ENST00000459979 ANP32CO43423 234 aa24.32■■□□□ 1.48
HOXD3-204ENST00000459979 PRELPP51888 382 aa24.32■■□□□ 1.48
HOXD3-204ENST00000459979 CACNA1SQ13698 1873 aa24.32■■□□□ 1.48
HOXD3-204ENST00000459979 TBC1D9BQ66K14 1250 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms