RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 GPR162Q16538 588 aa11.54□□□□□ -0.56
VPS50-207ENST00000458530 ANKRD24Q8TF21 1146 aa11.54□□□□□ -0.56
VPS50-207ENST00000458530 IFT57Q9NWB7 429 aa11.54□□□□□ -0.56
VPS50-207ENST00000458530 ERBB3P21860 1342 aa11.54□□□□□ -0.56
VPS50-207ENST00000458530 PNPLA7Q6ZV29 1317 aa11.54□□□□□ -0.56
VPS50-207ENST00000458530 FANCIQ9NVI1 1328 aa11.54□□□□□ -0.56
VPS50-207ENST00000458530 ZNF428Q96B54 188 aa11.53□□□□□ -0.56
VPS50-207ENST00000458530 ADCY9O60503 1353 aa11.53□□□□□ -0.56
VPS50-207ENST00000458530 CACNA1FO60840 1977 aa11.52□□□□□ -0.56
VPS50-207ENST00000458530 PKD1L3Q7Z443 1732 aa11.52□□□□□ -0.56
VPS50-207ENST00000458530 YBX3P16989 372 aaKnown RBP eCLIP11.52□□□□□ -0.57
VPS50-207ENST00000458530 AMOTQ4VCS5 1084 aa11.52□□□□□ -0.57
VPS50-207ENST00000458530 SLC27A3Q5K4L6 730 aa11.52□□□□□ -0.57
VPS50-207ENST00000458530 NLGN2Q8NFZ4 835 aa11.52□□□□□ -0.57
VPS50-207ENST00000458530 FAM212AQ96EL1 285 aa11.52□□□□□ -0.57
VPS50-207ENST00000458530 ACSBG1Q96GR2 724 aa11.52□□□□□ -0.57
VPS50-207ENST00000458530 PLEKHO1Q53GL0 409 aaPredicted RBP11.51□□□□□ -0.57
VPS50-207ENST00000458530 DCAF8Q5TAQ9 597 aa11.51□□□□□ -0.57
VPS50-207ENST00000458530 CFAP44Q96MT7 982 aa11.51□□□□□ -0.57
VPS50-207ENST00000458530 PPP4R2Q9NY27 417 aa11.51□□□□□ -0.57
VPS50-207ENST00000458530 TUBGCP6Q96RT7 1819 aa11.51□□□□□ -0.57
VPS50-207ENST00000458530 GNAT3A8MTJ3 354 aa11.5□□□□□ -0.57
VPS50-207ENST00000458530 GRIN3BO60391 1043 aa11.5□□□□□ -0.57
VPS50-207ENST00000458530 CSB-PGBD3P0DP91 1061 aa11.5□□□□□ -0.57
VPS50-207ENST00000458530 CANXP27824 592 aaKnown RBP11.5□□□□□ -0.57
VPS50-207ENST00000458530 LHX8Q68G74 356 aa11.5□□□□□ -0.57
VPS50-207ENST00000458530 IFNLR1Q8IU57 520 aaPredicted RBP11.5□□□□□ -0.57
VPS50-207ENST00000458530 ATP10DQ9P241 1426 aa11.5□□□□□ -0.57
VPS50-207ENST00000458530 SCN11AQ9UI33 1791 aa11.49□□□□□ -0.57
VPS50-207ENST00000458530 MS4A1P11836 297 aa11.49□□□□□ -0.57
VPS50-207ENST00000458530 IL2RBP14784 551 aa11.49□□□□□ -0.57
VPS50-207ENST00000458530 POLD1P28340 1107 aa11.49□□□□□ -0.57
VPS50-207ENST00000458530 MTHFSDQ2M296 383 aaKnown RBP11.49□□□□□ -0.57
VPS50-207ENST00000458530 NBPF6Q5VWK0 638 aa11.49□□□□□ -0.57
VPS50-207ENST00000458530 RAPGEF4Q8WZA2 1011 aa11.49□□□□□ -0.57
VPS50-207ENST00000458530 NBPF4Q96M43 638 aa11.49□□□□□ -0.57
VPS50-207ENST00000458530 LAS1LQ9Y4W2 734 aaKnown RBP11.49□□□□□ -0.57
VPS50-207ENST00000458530 ZNF853P0CG23 659 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 HSPA6P17066 643 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 IRX6P78412 446 aaPredicted RBP11.48□□□□□ -0.57
VPS50-207ENST00000458530 C1orf141Q5JVX7 400 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 USHBP1Q8N6Y0 703 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 TSR2Q969E8 191 aaKnown RBP11.48□□□□□ -0.57
VPS50-207ENST00000458530 BABAM1Q9NWV8 329 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 NLRP2Q9NX02 1062 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 ADAMTS7Q9UKP4 1686 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 KDM3BQ7LBC6 1761 aa11.48□□□□□ -0.57
VPS50-207ENST00000458530 SIPA1L3O60292 1781 aaPredicted RBP11.47□□□□□ -0.57
VPS50-207ENST00000458530 LY75O60449 1722 aa11.47□□□□□ -0.57
VPS50-207ENST00000458530 KIF16BQ96L93 1317 aa11.47□□□□□ -0.57
VPS50-207ENST00000458530 TATP17735 454 aaPredicted RBP11.47□□□□□ -0.57
VPS50-207ENST00000458530 RARSP54136 660 aaKnown RBP11.47□□□□□ -0.57
VPS50-207ENST00000458530 EXOSC9Q06265 439 aaKnown RBP11.47□□□□□ -0.57
VPS50-207ENST00000458530 ALDH1L2Q3SY69 923 aa11.47□□□□□ -0.57
VPS50-207ENST00000458530 AKAP4Q5JQC9 854 aa11.47□□□□□ -0.57
VPS50-207ENST00000458530 SOS1Q07889 1333 aaPredicted RBP11.46□□□□□ -0.57
VPS50-207ENST00000458530 ATMINO43313 823 aaPredicted RBP11.46□□□□□ -0.57
VPS50-207ENST00000458530 PYGBP11216 843 aa11.46□□□□□ -0.57
VPS50-207ENST00000458530 ZNF530Q6P9A1 599 aaPredicted RBP11.46□□□□□ -0.57
VPS50-207ENST00000458530 CHMP4AQ9BY43 222 aa11.46□□□□□ -0.57
VPS50-207ENST00000458530 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.46□□□□□ -0.57
VPS50-207ENST00000458530 SPG7Q9UQ90 795 aa11.46□□□□□ -0.57
VPS50-207ENST00000458530 PDE3AQ14432 1141 aa11.45□□□□□ -0.58
VPS50-207ENST00000458530 MCM10Q7L590 875 aa11.45□□□□□ -0.58
VPS50-207ENST00000458530 THUMPD2Q9BTF0 503 aaKnown RBP11.45□□□□□ -0.58
VPS50-207ENST00000458530 MBIPQ9NS73 344 aa11.45□□□□□ -0.58
VPS50-207ENST00000458530 SMC4Q9NTJ3 1288 aa11.45□□□□□ -0.58
VPS50-207ENST00000458530 PCDHB13Q9Y5F0 798 aa11.45□□□□□ -0.58
VPS50-207ENST00000458530 CEMIPQ8WUJ3 1361 aa11.44□□□□□ -0.58
VPS50-207ENST00000458530 CHL1O00533 1208 aa11.44□□□□□ -0.58
VPS50-207ENST00000458530 IPO8O15397 1037 aaKnown RBP11.44□□□□□ -0.58
VPS50-207ENST00000458530 AAMPQ13685 434 aa11.44□□□□□ -0.58
VPS50-207ENST00000458530 ASTLQ6HA08 431 aaPredicted RBP11.44□□□□□ -0.58
VPS50-207ENST00000458530 TFCP2L1Q9NZI6 479 aa11.44□□□□□ -0.58
VPS50-207ENST00000458530 HSP90AB1P08238 724 aaKnown RBP11.43□□□□□ -0.58
VPS50-207ENST00000458530 ATN1P54259 1190 aaPredicted RBP11.43□□□□□ -0.58
VPS50-207ENST00000458530 DCTN1Q14203 1278 aa11.43□□□□□ -0.58
VPS50-207ENST00000458530 TWISTNBQ3B726 338 aaPredicted RBP11.43□□□□□ -0.58
VPS50-207ENST00000458530 BMP2KQ9NSY1 1161 aaPredicted RBP11.43□□□□□ -0.58
VPS50-207ENST00000458530 TSPYL4Q9UJ04 414 aa11.43□□□□□ -0.58
VPS50-207ENST00000458530 CD2APQ9Y5K6 639 aa11.43□□□□□ -0.58
VPS50-207ENST00000458530 MEGF6O75095 1541 aa11.43□□□□□ -0.58
VPS50-207ENST00000458530 BCAR3O75815 825 aa11.42□□□□□ -0.58
VPS50-207ENST00000458530 BRPF1P55201 1214 aaPredicted RBP11.42□□□□□ -0.58
VPS50-207ENST00000458530 KCNQ4P56696 695 aa11.42□□□□□ -0.58
VPS50-207ENST00000458530 TEFQ10587 303 aa11.42□□□□□ -0.58
VPS50-207ENST00000458530 TAF7Q15545 349 aaPredicted RBP11.42□□□□□ -0.58
VPS50-207ENST00000458530 ZKSCAN2Q63HK3 967 aa11.42□□□□□ -0.58
VPS50-207ENST00000458530 COL23A1Q86Y22 540 aaPredicted RBP11.42□□□□□ -0.58
VPS50-207ENST00000458530 IFNL1Q8IU54 200 aa11.42□□□□□ -0.58
VPS50-207ENST00000458530 CCDC136Q96JN2 1154 aa11.42□□□□□ -0.58
VPS50-207ENST00000458530 GPBP1L1Q9HC44 474 aaPredicted RBP11.42□□□□□ -0.58
VPS50-207ENST00000458530 PLIN1O60240 522 aa11.41□□□□□ -0.58
VPS50-207ENST00000458530 FTSJ3Q8IY81 847 aaKnown RBP11.41□□□□□ -0.58
VPS50-207ENST00000458530 FRAT1Q92837 279 aaPredicted RBP11.41□□□□□ -0.58
VPS50-207ENST00000458530 PCDH11XQ9BZA7 1347 aa11.4□□□□□ -0.58
VPS50-207ENST00000458530 PCDH11YQ9BZA8 1340 aa11.4□□□□□ -0.58
VPS50-207ENST00000458530 MRC1P22897 1456 aa11.4□□□□□ -0.58
VPS50-207ENST00000458530 CICQ96RK0 1608 aaPredicted RBP11.4□□□□□ -0.58
VPS50-207ENST00000458530 KIF3CO14782 793 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms