RNA–Protein interactions for RNA: ENST00000456506.2

LMCD1-206, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 1,059 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-206ENST00000456506 LGR6Q9HBX8 967 aa16.29■□□□□ 0.2
LMCD1-206ENST00000456506 AKAP4Q5JQC9 854 aa16.28■□□□□ 0.2
LMCD1-206ENST00000456506 DNAJC10Q8IXB1 793 aa16.28■□□□□ 0.2
LMCD1-206ENST00000456506 SLC52A2Q9HAB3 445 aa16.28■□□□□ 0.2
LMCD1-206ENST00000456506 PIM2Q9P1W9 311 aa16.28■□□□□ 0.2
LMCD1-206ENST00000456506 CYP19A1P11511 503 aaPredicted RBP16.27■□□□□ 0.2
LMCD1-206ENST00000456506 PCGF6Q9BYE7 350 aa16.27■□□□□ 0.2
LMCD1-206ENST00000456506 CHRNA5P30532 468 aa16.26■□□□□ 0.19
LMCD1-206ENST00000456506 APLP1P51693 650 aa16.26■□□□□ 0.19
LMCD1-206ENST00000456506 C9orf131Q5VYM1 1079 aa16.26■□□□□ 0.19
LMCD1-206ENST00000456506 BCL2L12Q9HB09 334 aa16.26■□□□□ 0.19
LMCD1-206ENST00000456506 COL15A1P39059 1388 aa16.25■□□□□ 0.19
LMCD1-206ENST00000456506 PCNTO95613 3336 aa16.24■□□□□ 0.19
LMCD1-206ENST00000456506 PER1O15534 1290 aaPredicted RBP16.24■□□□□ 0.19
LMCD1-206ENST00000456506 RNMTO43148 476 aaKnown RBP16.24■□□□□ 0.19
LMCD1-206ENST00000456506 SLC39A6Q13433 755 aa16.24■□□□□ 0.19
LMCD1-206ENST00000456506 DALRD3Q5D0E6 543 aaKnown RBP16.24■□□□□ 0.19
LMCD1-206ENST00000456506 USPL1Q5W0Q7 1092 aa16.24■□□□□ 0.19
LMCD1-206ENST00000456506 KNSTRNQ9Y448 316 aa16.24■□□□□ 0.19
LMCD1-206ENST00000456506 KIF7Q2M1P5 1343 aa16.23■□□□□ 0.19
LMCD1-206ENST00000456506 PRELPP51888 382 aa16.23■□□□□ 0.19
LMCD1-206ENST00000456506 MTHFSDQ2M296 383 aaKnown RBP16.23■□□□□ 0.19
LMCD1-206ENST00000456506 RBM46Q8TBY0 533 aaKnown RBP16.23■□□□□ 0.19
LMCD1-206ENST00000456506 NARFQ9UHQ1 456 aa16.23■□□□□ 0.19
LMCD1-206ENST00000456506 ZBTB1Q9Y2K1 713 aa16.23■□□□□ 0.19
LMCD1-206ENST00000456506 CARMIL3Q8ND23 1372 aa16.23■□□□□ 0.19
LMCD1-206ENST00000456506 NFIXQ14938 502 aa16.22■□□□□ 0.19
LMCD1-206ENST00000456506 HMOX1P09601 288 aa16.21■□□□□ 0.19
LMCD1-206ENST00000456506 VSIG10Q8N0Z9 540 aa16.21■□□□□ 0.19
LMCD1-206ENST00000456506 SLX4Q8IY92 1834 aa16.21■□□□□ 0.19
LMCD1-206ENST00000456506 RNF181Q9P0P0 153 aa16.2■□□□□ 0.18
LMCD1-206ENST00000456506 ZPR1O75312 459 aa16.19■□□□□ 0.18
LMCD1-206ENST00000456506 KDM2BQ8NHM5 1336 aa16.19■□□□□ 0.18
LMCD1-206ENST00000456506 ZC3H4Q9UPT8 1303 aaKnown RBP16.19■□□□□ 0.18
LMCD1-206ENST00000456506 DLG5Q8TDM6 1919 aa16.18■□□□□ 0.18
LMCD1-206ENST00000456506 HTRA3P83110 453 aa16.18■□□□□ 0.18
LMCD1-206ENST00000456506 RASSF7Q02833 373 aa16.18■□□□□ 0.18
LMCD1-206ENST00000456506 FSTL1Q12841 308 aa16.18■□□□□ 0.18
LMCD1-206ENST00000456506 EIF5P55010 431 aaKnown RBP16.17■□□□□ 0.18
LMCD1-206ENST00000456506 JMYQ8N9B5 988 aa16.17■□□□□ 0.18
LMCD1-206ENST00000456506 RRAGCQ9HB90 399 aa16.17■□□□□ 0.18
LMCD1-206ENST00000456506 NPC1L1Q9UHC9 1359 aa16.16■□□□□ 0.18
LMCD1-206ENST00000456506 LAMB4A4D0S4 1761 aa16.16■□□□□ 0.18
LMCD1-206ENST00000456506 DIAPH1O60610 1272 aaKnown RBP16.16■□□□□ 0.18
LMCD1-206ENST00000456506 SERPINB2P05120 415 aa16.16■□□□□ 0.18
LMCD1-206ENST00000456506 NFKBIEO00221 500 aa16.15■□□□□ 0.18
LMCD1-206ENST00000456506 IL17REQ8NFR9 667 aa16.15■□□□□ 0.18
LMCD1-206ENST00000456506 KLRG1Q96E93 195 aa16.15■□□□□ 0.18
LMCD1-206ENST00000456506 CEMIPQ8WUJ3 1361 aa16.14■□□□□ 0.17
LMCD1-206ENST00000456506 HEG1Q9ULI3 1381 aa16.14■□□□□ 0.17
LMCD1-206ENST00000456506 ZNF496Q96IT1 587 aaPredicted RBP16.14■□□□□ 0.17
LMCD1-206ENST00000456506 CANXP27824 592 aaKnown RBP16.13■□□□□ 0.17
LMCD1-206ENST00000456506 CC2D1BQ5T0F9 858 aaKnown RBP16.13■□□□□ 0.17
LMCD1-206ENST00000456506 POTECB2RU33 542 aa16.12■□□□□ 0.17
LMCD1-206ENST00000456506 LMNB1P20700 586 aa16.12■□□□□ 0.17
LMCD1-206ENST00000456506 TBC1D9BQ66K14 1250 aa16.12■□□□□ 0.17
LMCD1-206ENST00000456506 C2CD5Q86YS7 1000 aa16.12■□□□□ 0.17
LMCD1-206ENST00000456506 TTLL6Q8N841 843 aa16.12■□□□□ 0.17
LMCD1-206ENST00000456506 KDM3BQ7LBC6 1761 aa16.12■□□□□ 0.17
LMCD1-206ENST00000456506 SCN4AP35499 1836 aa16.12■□□□□ 0.17
LMCD1-206ENST00000456506 NUP98P52948 1817 aa16.11■□□□□ 0.17
LMCD1-206ENST00000456506 GLTPD2A6NH11 291 aa16.11■□□□□ 0.17
LMCD1-206ENST00000456506 ZNF790Q6PG37 636 aa16.11■□□□□ 0.17
LMCD1-206ENST00000456506 C16orf71Q8IYS4 520 aaPredicted RBP16.11■□□□□ 0.17
LMCD1-206ENST00000456506 CCER1Q8TC90 406 aaPredicted RBP16.1■□□□□ 0.17
LMCD1-206ENST00000456506 ADAMTSL1Q8N6G6 1762 aa16.09■□□□□ 0.17
LMCD1-206ENST00000456506 STARD3NLO95772 234 aa16.09■□□□□ 0.17
LMCD1-206ENST00000456506 IL6STP40189 918 aaPredicted RBP16.09■□□□□ 0.17
LMCD1-206ENST00000456506 PRR5LQ6MZQ0 368 aa16.09■□□□□ 0.17
LMCD1-206ENST00000456506 SMC1BQ8NDV3 1235 aa16.09■□□□□ 0.17
LMCD1-206ENST00000456506 A0A087WZG4 1122 aa16.08■□□□□ 0.16
LMCD1-206ENST00000456506 GNAT3A8MTJ3 354 aa16.08■□□□□ 0.16
LMCD1-206ENST00000456506 H0YIN7 160 aa16.08■□□□□ 0.16
LMCD1-206ENST00000456506 TTC5Q8N0Z6 440 aa16.08■□□□□ 0.16
LMCD1-206ENST00000456506 BRIP1Q9BX63 1249 aa16.08■□□□□ 0.16
LMCD1-206ENST00000456506 KCNQ3O43525 872 aa16.07■□□□□ 0.16
LMCD1-206ENST00000456506 CAMTA2O94983 1202 aa16.07■□□□□ 0.16
LMCD1-206ENST00000456506 A1BGP04217 495 aa16.07■□□□□ 0.16
LMCD1-206ENST00000456506 VEGFAP15692 232 aaPredicted RBP16.07■□□□□ 0.16
LMCD1-206ENST00000456506 BICDL1Q6ZP65 573 aa16.07■□□□□ 0.16
LMCD1-206ENST00000456506 GAS2L2Q8NHY3 880 aa16.07■□□□□ 0.16
LMCD1-206ENST00000456506 PHACTR3Q96KR7 559 aa16.07■□□□□ 0.16
LMCD1-206ENST00000456506 TBC1D2BQ9UPU7 963 aa16.07■□□□□ 0.16
LMCD1-206ENST00000456506 LTBP3Q9NS15 1303 aa16.06■□□□□ 0.16
LMCD1-206ENST00000456506 TEFQ10587 303 aa16.06■□□□□ 0.16
LMCD1-206ENST00000456506 COL13A1Q5TAT6 717 aaPredicted RBP16.06■□□□□ 0.16
LMCD1-206ENST00000456506 CCDC24Q8N4L8 307 aa16.06■□□□□ 0.16
LMCD1-206ENST00000456506 TEX13AQ9BXU3 409 aaPredicted RBP16.06■□□□□ 0.16
LMCD1-206ENST00000456506 RSPH6AQ9H0K4 717 aa16.06■□□□□ 0.16
LMCD1-206ENST00000456506 FMNL2Q96PY5 1086 aa16.05■□□□□ 0.16
LMCD1-206ENST00000456506 PDZRN3Q9UPQ7 1066 aa16.05■□□□□ 0.16
LMCD1-206ENST00000456506 U2SURPO15042 1029 aaKnown RBP16.04■□□□□ 0.16
LMCD1-206ENST00000456506 C21orf2O43822 256 aa16.04■□□□□ 0.16
LMCD1-206ENST00000456506 PDE6BP35913 854 aa16.04■□□□□ 0.16
LMCD1-206ENST00000456506 PRAMEF22A3QJZ6 481 aa16.03■□□□□ 0.16
LMCD1-206ENST00000456506 USP16Q9Y5T5 823 aa16.03■□□□□ 0.16
LMCD1-206ENST00000456506 SRGNP10124 158 aa16.02■□□□□ 0.16
LMCD1-206ENST00000456506 ZNF622Q969S3 477 aaKnown RBP eCLIP16.02■□□□□ 0.16
LMCD1-206ENST00000456506 SNED1Q8TER0 1413 aa16.02■□□□□ 0.15
LMCD1-206ENST00000456506 BTBD11A6QL63 1104 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms