RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 YBX3P16989 372 aaKnown RBP eCLIP23.72■■□□□ 1.39
MSH6-207ENST00000456246 ZBTB1Q9Y2K1 713 aa23.72■■□□□ 1.39
MSH6-207ENST00000456246 TGFB2P61812 414 aa23.71■■□□□ 1.39
MSH6-207ENST00000456246 SRP68Q9UHB9 627 aaKnown RBP23.71■■□□□ 1.39
MSH6-207ENST00000456246 FKBP8Q14318 412 aa23.69■■□□□ 1.38
MSH6-207ENST00000456246 NARFQ9UHQ1 456 aa23.69■■□□□ 1.38
MSH6-207ENST00000456246 MYBBP1AQ9BQG0 1328 aaKnown RBP23.68■■□□□ 1.38
MSH6-207ENST00000456246 MAPK8IP3Q9UPT6 1336 aa23.68■■□□□ 1.38
MSH6-207ENST00000456246 A0A087WZG4 1122 aa23.68■■□□□ 1.38
MSH6-207ENST00000456246 MCM10Q7L590 875 aa23.68■■□□□ 1.38
MSH6-207ENST00000456246 PXDNLA1KZ92 1463 aa23.68■■□□□ 1.38
MSH6-207ENST00000456246 ZEB1P37275 1124 aaPredicted RBP23.67■■□□□ 1.38
MSH6-207ENST00000456246 USPL1Q5W0Q7 1092 aa23.67■■□□□ 1.38
MSH6-207ENST00000456246 PLEKHF1Q96S99 279 aa23.67■■□□□ 1.38
MSH6-207ENST00000456246 CANXP27824 592 aaKnown RBP23.66■■□□□ 1.38
MSH6-207ENST00000456246 EIF5P55010 431 aaKnown RBP23.66■■□□□ 1.38
MSH6-207ENST00000456246 ZNF784Q8NCA9 323 aaPredicted RBP23.65■■□□□ 1.38
MSH6-207ENST00000456246 KIAA1551Q9HCM1 1747 aa23.64■■□□□ 1.38
MSH6-207ENST00000456246 TM4SF1P30408 202 aa23.64■■□□□ 1.37
MSH6-207ENST00000456246 IL6STP40189 918 aaPredicted RBP23.64■■□□□ 1.37
MSH6-207ENST00000456246 NFE2L2Q16236 605 aa23.64■■□□□ 1.37
MSH6-207ENST00000456246 NPM2Q86SE8 214 aaKnown RBP23.64■■□□□ 1.37
MSH6-207ENST00000456246 PNISRQ8TF01 805 aaKnown RBP23.64■■□□□ 1.37
MSH6-207ENST00000456246 DLG5Q8TDM6 1919 aa23.64■■□□□ 1.37
MSH6-207ENST00000456246 DDR1Q08345 913 aa23.63■■□□□ 1.37
MSH6-207ENST00000456246 DCTN1Q14203 1278 aa23.63■■□□□ 1.37
MSH6-207ENST00000456246 TAF7Q15545 349 aaPredicted RBP23.63■■□□□ 1.37
MSH6-207ENST00000456246 POLRMTO00411 1230 aaKnown RBP23.62■■□□□ 1.37
MSH6-207ENST00000456246 KCNQ3O43525 872 aa23.62■■□□□ 1.37
MSH6-207ENST00000456246 SNRPA1P09661 255 aaKnown RBP23.62■■□□□ 1.37
MSH6-207ENST00000456246 N4BP2Q86UW6 1770 aaPredicted RBP23.6■■□□□ 1.37
MSH6-207ENST00000456246 SCN7AQ01118 1682 aa23.6■■□□□ 1.37
MSH6-207ENST00000456246 NFIXQ14938 502 aa23.59■■□□□ 1.37
MSH6-207ENST00000456246 A0A0G2JLW4 131 aa23.58■■□□□ 1.37
MSH6-207ENST00000456246 BCL2L12Q9HB09 334 aa23.58■■□□□ 1.37
MSH6-207ENST00000456246 BRCA1P38398 1863 aaKnown RBP23.58■■□□□ 1.36
MSH6-207ENST00000456246 NRXN2Q9P2S2 1712 aa23.57■■□□□ 1.36
MSH6-207ENST00000456246 A1BGP04217 495 aa23.57■■□□□ 1.36
MSH6-207ENST00000456246 DPEP1P16444 411 aa23.57■■□□□ 1.36
MSH6-207ENST00000456246 ZNF330Q9Y3S2 320 aaPredicted RBP23.57■■□□□ 1.36
MSH6-207ENST00000456246 KDM3BQ7LBC6 1761 aa23.56■■□□□ 1.36
MSH6-207ENST00000456246 LMOD3Q0VAK6 560 aa23.56■■□□□ 1.36
MSH6-207ENST00000456246 WWC3Q9ULE0 1092 aa23.56■■□□□ 1.36
MSH6-207ENST00000456246 BCS1LQ9Y276 419 aa23.56■■□□□ 1.36
MSH6-207ENST00000456246 USP16Q9Y5T5 823 aa23.56■■□□□ 1.36
MSH6-207ENST00000456246 PRKRIP1Q9H875 184 aaPredicted RBP23.55■■□□□ 1.36
MSH6-207ENST00000456246 PIM2Q9P1W9 311 aa23.55■■□□□ 1.36
MSH6-207ENST00000456246 AFDNP55196 1824 aaKnown RBP23.54■■□□□ 1.36
MSH6-207ENST00000456246 SERPINB2P05120 415 aa23.54■■□□□ 1.36
MSH6-207ENST00000456246 WDR43Q15061 677 aaKnown RBP eCLIP23.54■■□□□ 1.362e-9■□□□□ 9.3
MSH6-207ENST00000456246 LAMB4A4D0S4 1761 aa23.54■■□□□ 1.36
MSH6-207ENST00000456246 TBC1D2BQ9UPU7 963 aa23.53■■□□□ 1.36
MSH6-207ENST00000456246 RGL2O15211 777 aa23.52■■□□□ 1.36
MSH6-207ENST00000456246 KCNA3P22001 575 aa23.52■■□□□ 1.36
MSH6-207ENST00000456246 DZIP3Q86Y13 1208 aaKnown RBP23.52■■□□□ 1.36
MSH6-207ENST00000456246 BCORQ6W2J9 1755 aa23.52■■□□□ 1.36
MSH6-207ENST00000456246 ARFGEF1Q9Y6D6 1849 aa23.52■■□□□ 1.36
MSH6-207ENST00000456246 CARMIL3Q8ND23 1372 aa23.52■■□□□ 1.36
MSH6-207ENST00000456246 PRAMEF22A3QJZ6 481 aa23.51■■□□□ 1.35
MSH6-207ENST00000456246 CAMTA2O94983 1202 aa23.51■■□□□ 1.35
MSH6-207ENST00000456246 RIPK4P57078 832 aa23.51■■□□□ 1.35
MSH6-207ENST00000456246 ADCY9O60503 1353 aa23.51■■□□□ 1.35
MSH6-207ENST00000456246 TMPOP42166 694 aaKnown RBP23.5■■□□□ 1.35
MSH6-207ENST00000456246 DALRD3Q5D0E6 543 aaKnown RBP23.5■■□□□ 1.35
MSH6-207ENST00000456246 BABAM1Q9NWV8 329 aa23.5■■□□□ 1.35
MSH6-207ENST00000456246 MIS18AQ9NYP9 233 aa23.5■■□□□ 1.35
MSH6-207ENST00000456246 ZNF652Q9Y2D9 606 aa23.5■■□□□ 1.35
MSH6-207ENST00000456246 TBC1D9BQ66K14 1250 aa23.49■■□□□ 1.35
MSH6-207ENST00000456246 CLEC4GQ6UXB4 293 aa23.49■■□□□ 1.35
MSH6-207ENST00000456246 BICDL1Q6ZP65 573 aa23.49■■□□□ 1.35
MSH6-207ENST00000456246 THUMPD2Q9BTF0 503 aaKnown RBP23.49■■□□□ 1.35
MSH6-207ENST00000456246 PDZRN3Q9UPQ7 1066 aa23.49■■□□□ 1.35
MSH6-207ENST00000456246 ATP10DQ9P241 1426 aa23.49■■□□□ 1.35
MSH6-207ENST00000456246 GIGYF1O75420 1035 aaPredicted RBP23.48■■□□□ 1.35
MSH6-207ENST00000456246 EIF4A1P60842 406 aaKnown RBP23.48■■□□□ 1.35
MSH6-207ENST00000456246 RUNDC1Q96C34 613 aa23.48■■□□□ 1.35
MSH6-207ENST00000456246 SETDB2Q96T68 719 aa23.48■■□□□ 1.35
MSH6-207ENST00000456246 CHRNA5P30532 468 aa23.47■■□□□ 1.35
MSH6-207ENST00000456246 DLEC1Q9Y238 1755 aa23.47■■□□□ 1.35
MSH6-207ENST00000456246 TSPYL4Q9UJ04 414 aa23.46■■□□□ 1.35
MSH6-207ENST00000456246 NBPF26B4DH59 902 aa23.45■■□□□ 1.34
MSH6-207ENST00000456246 PIP4K2AP48426 406 aaPredicted RBP23.45■■□□□ 1.34
MSH6-207ENST00000456246 NBPF10Q6P3W6 841 aaKnown RBP23.45■■□□□ 1.34
MSH6-207ENST00000456246 ARHGAP27Q6ZUM4 889 aa23.45■■□□□ 1.34
MSH6-207ENST00000456246 NBPF15Q8N660 670 aa23.45■■□□□ 1.34
MSH6-207ENST00000456246 ERBB4Q15303 1308 aa23.44■■□□□ 1.34
MSH6-207ENST00000456246 H0YIN7 160 aa23.44■■□□□ 1.34
MSH6-207ENST00000456246 BRIP1Q9BX63 1249 aa23.44■■□□□ 1.34
MSH6-207ENST00000456246 NPHP1O15259 732 aa23.43■■□□□ 1.34
MSH6-207ENST00000456246 PDE6BP35913 854 aa23.43■■□□□ 1.34
MSH6-207ENST00000456246 PRR5LQ6MZQ0 368 aa23.43■■□□□ 1.34
MSH6-207ENST00000456246 CCDC146Q8IYE0 955 aa23.43■■□□□ 1.34
MSH6-207ENST00000456246 CNBD1Q8NA66 436 aa23.43■■□□□ 1.34
MSH6-207ENST00000456246 ADAMTS8Q9UP79 889 aa23.43■■□□□ 1.34
MSH6-207ENST00000456246 ST5P78524 1137 aa23.42■■□□□ 1.34
MSH6-207ENST00000456246 C2CD5Q86YS7 1000 aa23.42■■□□□ 1.34
MSH6-207ENST00000456246 TTLL6Q8N841 843 aa23.41■■□□□ 1.34
MSH6-207ENST00000456246 GPBP1L1Q9HC44 474 aaPredicted RBP23.41■■□□□ 1.34
MSH6-207ENST00000456246 ANKRD31Q8N7Z5 1873 aa23.4■■□□□ 1.34
MSH6-207ENST00000456246 NEUROD2Q15784 382 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms