RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TMEM94Q12767 1356 aa18.47■□□□□ 0.55
LDLR-202ENST00000455727 GBP4Q96PP9 640 aa18.47■□□□□ 0.55
LDLR-202ENST00000455727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.47■□□□□ 0.55
LDLR-202ENST00000455727 MTX1Q13505 466 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 KSR2Q6VAB6 950 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 ESYT1Q9BSJ8 1104 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 HYPKQ9NX55 129 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 HDAC5Q9UQL6 1122 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 SRGAP3O43295 1099 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 ST18O60284 1047 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 TRAK2O60296 914 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 SURF6O75683 361 aaKnown RBP18.46■□□□□ 0.55
LDLR-202ENST00000455727 PLEKHG5O94827 1062 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 ZC3H6P61129 1189 aaKnown RBP18.46■□□□□ 0.55
LDLR-202ENST00000455727 HSP90AB4PQ58FF6 505 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 KIF1BPQ96EK5 621 aa18.46■□□□□ 0.55
LDLR-202ENST00000455727 EPB41L2O43491 1005 aaKnown RBP18.45■□□□□ 0.54
LDLR-202ENST00000455727 PTMSP20962 102 aa18.45■□□□□ 0.54
LDLR-202ENST00000455727 CLEC17AQ6ZS10 378 aa18.45■□□□□ 0.54
LDLR-202ENST00000455727 RAPGEF4Q8WZA2 1011 aa18.45■□□□□ 0.54
LDLR-202ENST00000455727 CHMLP26374 656 aa18.45■□□□□ 0.54
LDLR-202ENST00000455727 RHPN1Q8TCX5 695 aa18.45■□□□□ 0.54
LDLR-202ENST00000455727 ANXA1P04083 346 aa18.44■□□□□ 0.54
LDLR-202ENST00000455727 TSHZ3Q63HK5 1081 aa18.44■□□□□ 0.54
LDLR-202ENST00000455727 AK9Q5TCS8 1911 aa18.44■□□□□ 0.54
LDLR-202ENST00000455727 NPHP3Q7Z494 1330 aa18.44■□□□□ 0.54
LDLR-202ENST00000455727 CADPS2Q86UW7 1296 aa18.44■□□□□ 0.54
LDLR-202ENST00000455727 MAP3K2Q9Y2U5 619 aa18.44■□□□□ 0.54
LDLR-202ENST00000455727 DDX21Q9NR30 783 aaKnown RBP eCLIP18.43■□□□□ 0.54
LDLR-202ENST00000455727 TRIM6-TRIM34B2RNG4 842 aa18.43■□□□□ 0.54
LDLR-202ENST00000455727 L1TD1Q5T7N2 865 aaKnown RBP18.43■□□□□ 0.54
LDLR-202ENST00000455727 IL17RAQ96F46 866 aa18.43■□□□□ 0.54
LDLR-202ENST00000455727 IL1RAPL2Q9NP60 686 aa18.43■□□□□ 0.54
LDLR-202ENST00000455727 SPG7Q9UQ90 795 aa18.43■□□□□ 0.54
LDLR-202ENST00000455727 TATP17735 454 aaPredicted RBP18.42■□□□□ 0.54
LDLR-202ENST00000455727 ANAPC15P60006 121 aa18.42■□□□□ 0.54
LDLR-202ENST00000455727 CWC22Q9HCG8 908 aaKnown RBP18.42■□□□□ 0.54
LDLR-202ENST00000455727 PROSER3Q2NL68 480 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 IL27Q8NEV9 243 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 RILPL2Q969X0 211 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 SLC52A2Q9HAB3 445 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 NLRP2Q9NX02 1062 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 TNS3Q68CZ2 1445 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 KDM6AO15550 1401 aaPredicted RBP18.41■□□□□ 0.54
LDLR-202ENST00000455727 DDX58O95786 925 aaKnown RBP18.41■□□□□ 0.54
LDLR-202ENST00000455727 MCCP23508 829 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 ZNF790Q6PG37 636 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 FOXD4L1Q9NU39 408 aa18.41■□□□□ 0.54
LDLR-202ENST00000455727 USP42Q9H9J4 1324 aaKnown RBP18.41■□□□□ 0.54
LDLR-202ENST00000455727 PHKG2P15735 406 aa18.4■□□□□ 0.54
LDLR-202ENST00000455727 LINS1Q8NG48 757 aa18.4■□□□□ 0.54
LDLR-202ENST00000455727 PI4K2BQ8TCG2 481 aa18.4■□□□□ 0.54
LDLR-202ENST00000455727 C9orf78Q9NZ63 289 aaPredicted RBP18.4■□□□□ 0.54
LDLR-202ENST00000455727 UTYO14607 1347 aa18.4■□□□□ 0.54
LDLR-202ENST00000455727 NUCB2P80303 420 aa18.4■□□□□ 0.54
LDLR-202ENST00000455727 SKOR2Q2VWA4 1001 aaPredicted RBP18.4■□□□□ 0.54
LDLR-202ENST00000455727 MCM2P49736 904 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 PDIA6Q15084 440 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 NUTM1Q86Y26 1132 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 FSD2A1L4K1 749 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 PRAMEF22A3QJZ6 481 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 UNC5CLQ8IV45 518 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 IFNL2Q8IZJ0 200 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 PKD1L3Q7Z443 1732 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 MEGF6O75095 1541 aa18.39■□□□□ 0.53
LDLR-202ENST00000455727 C5P01031 1676 aa18.38■□□□□ 0.53
LDLR-202ENST00000455727 MRC1P22897 1456 aa18.38■□□□□ 0.53
LDLR-202ENST00000455727 CPDO75976 1380 aa18.38■□□□□ 0.53
LDLR-202ENST00000455727 BRPF3Q9ULD4 1205 aa18.38■□□□□ 0.53
LDLR-202ENST00000455727 SPATA31A3Q5VYP0 1347 aa18.38■□□□□ 0.53
LDLR-202ENST00000455727 TTC41PQ6P2S7 1318 aa18.38■□□□□ 0.53
LDLR-202ENST00000455727 ERC1Q8IUD2 1116 aa18.37■□□□□ 0.53
LDLR-202ENST00000455727 DDX17Q92841 729 aaKnown RBP18.37■□□□□ 0.53
LDLR-202ENST00000455727 CYP2E1P05181 493 aaPredicted RBP18.37■□□□□ 0.53
LDLR-202ENST00000455727 SSFA2P28290 1259 aa18.37■□□□□ 0.53
LDLR-202ENST00000455727 ISY1Q9ULR0 285 aaKnown RBP18.37■□□□□ 0.53
LDLR-202ENST00000455727 GRM8O00222 908 aa18.36■□□□□ 0.53
LDLR-202ENST00000455727 NFATC2IPQ8NCF5 419 aa18.36■□□□□ 0.53
LDLR-202ENST00000455727 DCAF5Q96JK2 942 aa18.36■□□□□ 0.53
LDLR-202ENST00000455727 ANO2Q9NQ90 1003 aa18.36■□□□□ 0.53
LDLR-202ENST00000455727 GOLGA6L3A6NEY3 463 aa18.35■□□□□ 0.53
LDLR-202ENST00000455727 GOLGA6L22H0YM25 854 aa18.35■□□□□ 0.53
LDLR-202ENST00000455727 CWF19L2Q2TBE0 894 aaKnown RBP18.35■□□□□ 0.53
LDLR-202ENST00000455727 LARP1Q6PKG0 1096 aaKnown RBP18.35■□□□□ 0.53
LDLR-202ENST00000455727 CNTROBQ8N137 903 aa18.35■□□□□ 0.53
LDLR-202ENST00000455727 CLASRPQ8N2M8 674 aaKnown RBP18.35■□□□□ 0.53
LDLR-202ENST00000455727 GLRX3O76003 335 aaKnown RBP18.34■□□□□ 0.53
LDLR-202ENST00000455727 CSB-PGBD3P0DP91 1061 aa18.34■□□□□ 0.53
LDLR-202ENST00000455727 NEK4P51957 841 aa18.34■□□□□ 0.53
LDLR-202ENST00000455727 XIRP1Q702N8 1843 aaKnown RBP18.34■□□□□ 0.53
LDLR-202ENST00000455727 SLC39A6Q13433 755 aa18.34■□□□□ 0.53
LDLR-202ENST00000455727 OS9Q13438 667 aaPredicted RBP18.34■□□□□ 0.53
LDLR-202ENST00000455727 BAG4O95429 457 aaKnown RBP18.33■□□□□ 0.53
LDLR-202ENST00000455727 CABLES1Q8TDN4 633 aa18.33■□□□□ 0.53
LDLR-202ENST00000455727 GZF1Q9H116 711 aaPredicted RBP18.33■□□□□ 0.53
LDLR-202ENST00000455727 PARP4Q9UKK3 1724 aaKnown RBP18.33■□□□□ 0.52
LDLR-202ENST00000455727 CYP27B1O15528 508 aa18.32■□□□□ 0.52
LDLR-202ENST00000455727 SGSM2O43147 1006 aa18.32■□□□□ 0.52
LDLR-202ENST00000455727 SNRPA1P09661 255 aaKnown RBP18.32■□□□□ 0.52
LDLR-202ENST00000455727 HSPA4P34932 840 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms