RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SSH1Q8WYL5 1049 aa14.18□□□□□ -0.14
SCN9A-205ENST00000454569 NECTIN2Q92692 538 aa14.18□□□□□ -0.14
SCN9A-205ENST00000454569 KRT27Q7Z3Y8 459 aa14.17□□□□□ -0.14
SCN9A-205ENST00000454569 SLC4A9Q96Q91 983 aa14.17□□□□□ -0.14
SCN9A-205ENST00000454569 TNNQ9UQP3 1299 aa14.17□□□□□ -0.14
SCN9A-205ENST00000454569 RNF123Q5XPI4 1314 aa14.17□□□□□ -0.14
SCN9A-205ENST00000454569 PTCD1O75127 700 aaKnown RBP14.17□□□□□ -0.14
SCN9A-205ENST00000454569 GIGYF1O75420 1035 aaPredicted RBP14.17□□□□□ -0.14
SCN9A-205ENST00000454569 IRX6P78412 446 aaPredicted RBP14.17□□□□□ -0.14
SCN9A-205ENST00000454569 CACNB1Q02641 598 aaPredicted RBP14.17□□□□□ -0.14
SCN9A-205ENST00000454569 USP16Q9Y5T5 823 aa14.16□□□□□ -0.14
SCN9A-205ENST00000454569 TJP1Q07157 1748 aa14.16□□□□□ -0.14
SCN9A-205ENST00000454569 LAMB4A4D0S4 1761 aa14.15□□□□□ -0.14
SCN9A-205ENST00000454569 PELP1Q8IZL8 1130 aaKnown RBP14.15□□□□□ -0.14
SCN9A-205ENST00000454569 CT47B1P0C2W7 299 aaPredicted RBP14.14□□□□□ -0.15
SCN9A-205ENST00000454569 EIF2S2P20042 333 aaKnown RBP14.14□□□□□ -0.15
SCN9A-205ENST00000454569 TTC5Q8N0Z6 440 aa14.14□□□□□ -0.15
SCN9A-205ENST00000454569 MRPL50Q8N5N7 158 aaKnown RBP14.14□□□□□ -0.15
SCN9A-205ENST00000454569 MYH14Q7Z406 1995 aaKnown RBP14.14□□□□□ -0.15
SCN9A-205ENST00000454569 ANXA1P04083 346 aa14.13□□□□□ -0.15
SCN9A-205ENST00000454569 RRP1P56182 461 aaKnown RBP14.13□□□□□ -0.15
SCN9A-205ENST00000454569 C20orf194Q5TEA3 1177 aa14.13□□□□□ -0.15
SCN9A-205ENST00000454569 G2E3Q7L622 706 aa14.13□□□□□ -0.15
SCN9A-205ENST00000454569 PLCD3Q8N3E9 789 aa14.13□□□□□ -0.15
SCN9A-205ENST00000454569 FMNL2Q96PY5 1086 aa14.13□□□□□ -0.15
SCN9A-205ENST00000454569 PIP4K2AP48426 406 aaPredicted RBP14.13□□□□□ -0.15
SCN9A-205ENST00000454569 KCNQ4P56696 695 aa14.13□□□□□ -0.15
SCN9A-205ENST00000454569 RBM42Q9BTD8 480 aaKnown RBP14.13□□□□□ -0.15
SCN9A-205ENST00000454569 SMC4Q9NTJ3 1288 aa14.13□□□□□ -0.15
SCN9A-205ENST00000454569 LY75O60449 1722 aa14.12□□□□□ -0.15
SCN9A-205ENST00000454569 PROSER3Q2NL68 480 aa14.12□□□□□ -0.15
SCN9A-205ENST00000454569 ALDH1L2Q3SY69 923 aa14.12□□□□□ -0.15
SCN9A-205ENST00000454569 TAF1LQ8IZX4 1826 aa14.11□□□□□ -0.15
SCN9A-205ENST00000454569 TRIM37O94972 964 aa14.11□□□□□ -0.15
SCN9A-205ENST00000454569 PDIA6Q15084 440 aa14.11□□□□□ -0.15
SCN9A-205ENST00000454569 HDGFL1Q5TGJ6 251 aa14.11□□□□□ -0.15
SCN9A-205ENST00000454569 FRAT1Q92837 279 aaPredicted RBP14.11□□□□□ -0.15
SCN9A-205ENST00000454569 NOB1Q9ULX3 412 aaKnown RBP14.11□□□□□ -0.15
SCN9A-205ENST00000454569 SNRPA1P09661 255 aaKnown RBP14.1□□□□□ -0.15
SCN9A-205ENST00000454569 FAM196AQ6ZSG2 479 aa14.1□□□□□ -0.15
SCN9A-205ENST00000454569 DNAJC10Q8IXB1 793 aa14.1□□□□□ -0.15
SCN9A-205ENST00000454569 PHAXQ9H814 394 aaKnown RBP14.1□□□□□ -0.15
SCN9A-205ENST00000454569 CHPF2Q9P2E5 772 aa14.1□□□□□ -0.15
SCN9A-205ENST00000454569 PALLDQ8WX93 1383 aa14.1□□□□□ -0.15
SCN9A-205ENST00000454569 COL5A3P25940 1745 aaPredicted RBP14.1□□□□□ -0.15
SCN9A-205ENST00000454569 HOXB7P09629 217 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 GTF3C3Q9Y5Q9 886 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 NBPF26B4DH59 902 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 A1BGP04217 495 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 RLBP1P12271 317 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 ITPK1Q13572 414 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 NBPF14Q5TI25 921 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 NBPF10Q6P3W6 841 aaKnown RBP14.09□□□□□ -0.15
SCN9A-205ENST00000454569 NBPF15Q8N660 670 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 ZNF428Q96B54 188 aa14.09□□□□□ -0.15
SCN9A-205ENST00000454569 TNS1Q9HBL0 1735 aaKnown RBP14.09□□□□□ -0.15
SCN9A-205ENST00000454569 BRPF1P55201 1214 aaPredicted RBP14.08□□□□□ -0.16
SCN9A-205ENST00000454569 CCDC30Q5VVM6 783 aa14.08□□□□□ -0.16
SCN9A-205ENST00000454569 BCL11BQ9C0K0 894 aaPredicted RBP14.08□□□□□ -0.16
SCN9A-205ENST00000454569 LOC102724428A0A0B4J2F2 783 aa14.07□□□□□ -0.16
SCN9A-205ENST00000454569 SIK1P57059 783 aa14.07□□□□□ -0.16
SCN9A-205ENST00000454569 LRP10Q7Z4F1 713 aa14.07□□□□□ -0.16
SCN9A-205ENST00000454569 PANK1Q8TE04 598 aa14.07□□□□□ -0.16
SCN9A-205ENST00000454569 CLUAP1Q96AJ1 413 aa14.07□□□□□ -0.16
SCN9A-205ENST00000454569 CICQ96RK0 1608 aaPredicted RBP14.07□□□□□ -0.16
SCN9A-205ENST00000454569 SOS1Q07889 1333 aaPredicted RBP14.07□□□□□ -0.16
SCN9A-205ENST00000454569 ZNF831Q5JPB2 1677 aa14.07□□□□□ -0.16
SCN9A-205ENST00000454569 TRIM27P14373 513 aa14.06□□□□□ -0.16
SCN9A-205ENST00000454569 MYL6BP14649 208 aa14.06□□□□□ -0.16
SCN9A-205ENST00000454569 VSIG10Q8N0Z9 540 aa14.06□□□□□ -0.16
SCN9A-205ENST00000454569 CYP19A1P11511 503 aaPredicted RBP14.05□□□□□ -0.16
SCN9A-205ENST00000454569 ATP6V1AP38606 617 aa14.05□□□□□ -0.16
SCN9A-205ENST00000454569 RREB1Q92766 1687 aa14.05□□□□□ -0.16
SCN9A-205ENST00000454569 ZKSCAN2Q63HK3 967 aa14.05□□□□□ -0.16
SCN9A-205ENST00000454569 SMARCC1Q92922 1105 aaPredicted RBP14.05□□□□□ -0.16
SCN9A-205ENST00000454569 STK31Q9BXU1 1019 aa14.05□□□□□ -0.16
SCN9A-205ENST00000454569 DDX21Q9NR30 783 aaKnown RBP eCLIP14.05□□□□□ -0.16
SCN9A-205ENST00000454569 F6X3S4 739 aa14.04□□□□□ -0.16
SCN9A-205ENST00000454569 ECM2O94769 699 aaPredicted RBP14.04□□□□□ -0.16
SCN9A-205ENST00000454569 FLIIQ13045 1269 aa14.04□□□□□ -0.16
SCN9A-205ENST00000454569 ATF7IPQ6VMQ6 1270 aa14.04□□□□□ -0.16
SCN9A-205ENST00000454569 SMIM5Q71RC9 77 aa14.04□□□□□ -0.16
SCN9A-205ENST00000454569 LINC00116Q8NCU8 138 aa14.04□□□□□ -0.16
SCN9A-205ENST00000454569 CRBNQ96SW2 442 aa14.04□□□□□ -0.16
SCN9A-205ENST00000454569 LRRC4BQ9NT99 713 aa14.04□□□□□ -0.16
SCN9A-205ENST00000454569 DBF4Q9UBU7 674 aaPredicted RBP14.04□□□□□ -0.16
SCN9A-205ENST00000454569 INTS5Q6P9B9 1019 aaKnown RBP14.03□□□□□ -0.16
SCN9A-205ENST00000454569 EXOC6Q8TAG9 804 aa14.03□□□□□ -0.16
SCN9A-205ENST00000454569 KIF16BQ96L93 1317 aa14.02□□□□□ -0.16
SCN9A-205ENST00000454569 CANXP27824 592 aaKnown RBP14.02□□□□□ -0.16
SCN9A-205ENST00000454569 AIMP1Q12904 312 aaKnown RBP14.02□□□□□ -0.16
SCN9A-205ENST00000454569 ZBTB1Q9Y2K1 713 aa14.02□□□□□ -0.16
SCN9A-205ENST00000454569 ARFGEF2Q9Y6D5 1785 aa14.02□□□□□ -0.17
SCN9A-205ENST00000454569 NUP188Q5SRE5 1749 aa14.01□□□□□ -0.17
SCN9A-205ENST00000454569 COPS6Q7L5N1 327 aa14.01□□□□□ -0.17
SCN9A-205ENST00000454569 XAGE3Q8WTP9 111 aa14.01□□□□□ -0.17
SCN9A-205ENST00000454569 COG6Q9Y2V7 657 aa14.01□□□□□ -0.17
SCN9A-205ENST00000454569 N4BP2Q86UW6 1770 aaPredicted RBP14.01□□□□□ -0.17
SCN9A-205ENST00000454569 ADCY9O60503 1353 aa14.01□□□□□ -0.17
SCN9A-205ENST00000454569 APBA3O96018 575 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms