RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 HTATSF1O43719 755 aaKnown RBP16.04■□□□□ 0.16
USP40-210ENST00000454354 GRIN3BO60391 1043 aa16.04■□□□□ 0.16
USP40-210ENST00000454354 PELP1Q8IZL8 1130 aaKnown RBP16.04■□□□□ 0.16
USP40-210ENST00000454354 ZBTB1Q9Y2K1 713 aa16.04■□□□□ 0.16
USP40-210ENST00000454354 DLEC1Q9Y238 1755 aa16.03■□□□□ 0.16
USP40-210ENST00000454354 DDX10Q13206 875 aaKnown RBP16.03■□□□□ 0.16
USP40-210ENST00000454354 SRP68Q9UHB9 627 aaKnown RBP16.03■□□□□ 0.16
USP40-210ENST00000454354 STARD3NLO95772 234 aa16.02■□□□□ 0.16
USP40-210ENST00000454354 FKBP8Q14318 412 aa16.02■□□□□ 0.16
USP40-210ENST00000454354 RTF1Q92541 710 aaKnown RBP16.02■□□□□ 0.16
USP40-210ENST00000454354 FMNL2Q96PY5 1086 aa16.02■□□□□ 0.16
USP40-210ENST00000454354 PLEKHF1Q96S99 279 aa16.02■□□□□ 0.16
USP40-210ENST00000454354 TEX13AQ9BXU3 409 aaPredicted RBP16.02■□□□□ 0.16
USP40-210ENST00000454354 BTBD11A6QL63 1104 aa16.01■□□□□ 0.15
USP40-210ENST00000454354 MCM10Q7L590 875 aa16.01■□□□□ 0.15
USP40-210ENST00000454354 NARFQ9UHQ1 456 aa16.01■□□□□ 0.15
USP40-210ENST00000454354 PARP3Q9Y6F1 533 aa16.01■□□□□ 0.15
USP40-210ENST00000454354 MYBBP1AQ9BQG0 1328 aaKnown RBP16■□□□□ 0.15
USP40-210ENST00000454354 ZPR1O75312 459 aa16■□□□□ 0.15
USP40-210ENST00000454354 EIF5P55010 431 aaKnown RBP16■□□□□ 0.15
USP40-210ENST00000454354 TGFB2P61812 414 aa16■□□□□ 0.15
USP40-210ENST00000454354 DDR1Q08345 913 aa16■□□□□ 0.15
USP40-210ENST00000454354 USPL1Q5W0Q7 1092 aa16■□□□□ 0.15
USP40-210ENST00000454354 KCNQ3O43525 872 aa15.99■□□□□ 0.15
USP40-210ENST00000454354 NEFMP07197 916 aa15.99■□□□□ 0.15
USP40-210ENST00000454354 TM4SF1P30408 202 aa15.99■□□□□ 0.15
USP40-210ENST00000454354 ZNF784Q8NCA9 323 aaPredicted RBP15.99■□□□□ 0.15
USP40-210ENST00000454354 POLRMTO00411 1230 aaKnown RBP15.98■□□□□ 0.15
USP40-210ENST00000454354 DCTN1Q14203 1278 aa15.98■□□□□ 0.15
USP40-210ENST00000454354 ANKRD31Q8N7Z5 1873 aa15.98■□□□□ 0.15
USP40-210ENST00000454354 PNNQ9H307 717 aaKnown RBP15.98■□□□□ 0.15
USP40-210ENST00000454354 A0A087WZG4 1122 aa15.97■□□□□ 0.15
USP40-210ENST00000454354 CANXP27824 592 aaKnown RBP15.97■□□□□ 0.15
USP40-210ENST00000454354 IL6STP40189 918 aaPredicted RBP15.97■□□□□ 0.15
USP40-210ENST00000454354 NFE2L2Q16236 605 aa15.97■□□□□ 0.15
USP40-210ENST00000454354 BCL2L12Q9HB09 334 aa15.97■□□□□ 0.15
USP40-210ENST00000454354 MAPK8IP3Q9UPT6 1336 aa15.95■□□□□ 0.14
USP40-210ENST00000454354 NFIXQ14938 502 aa15.95■□□□□ 0.14
USP40-210ENST00000454354 TAF7Q15545 349 aaPredicted RBP15.95■□□□□ 0.14
USP40-210ENST00000454354 ADCY9O60503 1353 aa15.95■□□□□ 0.14
USP40-210ENST00000454354 A0A0G2JLW4 131 aa15.94■□□□□ 0.14
USP40-210ENST00000454354 SNRPA1P09661 255 aaKnown RBP15.94■□□□□ 0.14
USP40-210ENST00000454354 COL11A2P13942 1736 aaPredicted RBP15.94■□□□□ 0.14
USP40-210ENST00000454354 SBF1O95248 1867 aa15.93■□□□□ 0.14
USP40-210ENST00000454354 A1BGP04217 495 aa15.93■□□□□ 0.14
USP40-210ENST00000454354 DPEP1P16444 411 aa15.93■□□□□ 0.14
USP40-210ENST00000454354 KCNA3P22001 575 aa15.93■□□□□ 0.14
USP40-210ENST00000454354 PNISRQ8TF01 805 aaKnown RBP15.93■□□□□ 0.14
USP40-210ENST00000454354 WWC3Q9ULE0 1092 aa15.93■□□□□ 0.14
USP40-210ENST00000454354 USP16Q9Y5T5 823 aa15.93■□□□□ 0.14
USP40-210ENST00000454354 NUP98P52948 1817 aa15.93■□□□□ 0.14
USP40-210ENST00000454354 PRAMEF22A3QJZ6 481 aa15.92■□□□□ 0.14
USP40-210ENST00000454354 ZEB1P37275 1124 aaPredicted RBP15.92■□□□□ 0.14
USP40-210ENST00000454354 PRKRIP1Q9H875 184 aaPredicted RBP15.92■□□□□ 0.14
USP40-210ENST00000454354 ARFGEF2Q9Y6D5 1785 aa15.92■□□□□ 0.14
USP40-210ENST00000454354 CAMTA2O94983 1202 aa15.9■□□□□ 0.14
USP40-210ENST00000454354 SERPINB2P05120 415 aa15.9■□□□□ 0.14
USP40-210ENST00000454354 TBC1D2BQ9UPU7 963 aa15.9■□□□□ 0.14
USP40-210ENST00000454354 ATP10DQ9P241 1426 aa15.9■□□□□ 0.14
USP40-210ENST00000454354 CACNA1SQ13698 1873 aa15.9■□□□□ 0.14
USP40-210ENST00000454354 CARMIL3Q8ND23 1372 aa15.89■□□□□ 0.13
USP40-210ENST00000454354 THUMPD2Q9BTF0 503 aaKnown RBP15.89■□□□□ 0.13
USP40-210ENST00000454354 MIS18AQ9NYP9 233 aa15.89■□□□□ 0.13
USP40-210ENST00000454354 PIM2Q9P1W9 311 aa15.89■□□□□ 0.13
USP40-210ENST00000454354 BCS1LQ9Y276 419 aa15.89■□□□□ 0.13
USP40-210ENST00000454354 ZNF330Q9Y3S2 320 aaPredicted RBP15.89■□□□□ 0.13
USP40-210ENST00000454354 NBPF26B4DH59 902 aa15.88■□□□□ 0.13
USP40-210ENST00000454354 RGL2O15211 777 aa15.88■□□□□ 0.13
USP40-210ENST00000454354 RIPK4P57078 832 aa15.88■□□□□ 0.13
USP40-210ENST00000454354 EIF4A1P60842 406 aaKnown RBP15.88■□□□□ 0.13
USP40-210ENST00000454354 TBC1D9BQ66K14 1250 aa15.88■□□□□ 0.13
USP40-210ENST00000454354 NBPF10Q6P3W6 841 aaKnown RBP15.88■□□□□ 0.13
USP40-210ENST00000454354 NPM2Q86SE8 214 aaKnown RBP15.88■□□□□ 0.13
USP40-210ENST00000454354 DZIP3Q86Y13 1208 aaKnown RBP15.88■□□□□ 0.13
USP40-210ENST00000454354 NBPF15Q8N660 670 aa15.88■□□□□ 0.13
USP40-210ENST00000454354 CCDC88AQ3V6T2 1871 aa15.88■□□□□ 0.13
USP40-210ENST00000454354 GIGYF1O75420 1035 aaPredicted RBP15.87■□□□□ 0.13
USP40-210ENST00000454354 CHRNA5P30532 468 aa15.87■□□□□ 0.13
USP40-210ENST00000454354 TMPOP42166 694 aaKnown RBP15.87■□□□□ 0.13
USP40-210ENST00000454354 PIP4K2AP48426 406 aaPredicted RBP15.87■□□□□ 0.13
USP40-210ENST00000454354 LMOD3Q0VAK6 560 aa15.87■□□□□ 0.13
USP40-210ENST00000454354 WDR43Q15061 677 aaKnown RBP eCLIP15.86■□□□□ 0.13
USP40-210ENST00000454354 CLEC4GQ6UXB4 293 aa15.86■□□□□ 0.13
USP40-210ENST00000454354 BICDL1Q6ZP65 573 aa15.86■□□□□ 0.13
USP40-210ENST00000454354 BABAM1Q9NWV8 329 aa15.86■□□□□ 0.13
USP40-210ENST00000454354 DALRD3Q5D0E6 543 aaKnown RBP15.85■□□□□ 0.13
USP40-210ENST00000454354 RUNDC1Q96C34 613 aa15.85■□□□□ 0.13
USP40-210ENST00000454354 ANKRD36CQ5JPF3 1778 aa15.85■□□□□ 0.13
USP40-210ENST00000454354 FER1L6Q2WGJ9 1857 aa15.84■□□□□ 0.13
USP40-210ENST00000454354 DICER1Q9UPY3 1922 aaKnown RBP15.84■□□□□ 0.13
USP40-210ENST00000454354 PRR5LQ6MZQ0 368 aa15.84■□□□□ 0.13
USP40-210ENST00000454354 CCDC146Q8IYE0 955 aa15.84■□□□□ 0.13
USP40-210ENST00000454354 ADAMTS8Q9UP79 889 aa15.84■□□□□ 0.13
USP40-210ENST00000454354 TIAM2Q8IVF5 1701 aa15.83■□□□□ 0.13
USP40-210ENST00000454354 SETDB2Q96T68 719 aa15.83■□□□□ 0.12
USP40-210ENST00000454354 BRIP1Q9BX63 1249 aa15.83■□□□□ 0.12
USP40-210ENST00000454354 TSPYL4Q9UJ04 414 aa15.83■□□□□ 0.12
USP40-210ENST00000454354 PDZRN3Q9UPQ7 1066 aa15.83■□□□□ 0.12
USP40-210ENST00000454354 ZNF652Q9Y2D9 606 aa15.83■□□□□ 0.12
USP40-210ENST00000454354 ERBB4Q15303 1308 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms