RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ERVV-2B6SEH9 535 aa11.5□□□□□ -0.57
SYNE1-214ENST00000454018 RIPK4P57078 832 aa11.5□□□□□ -0.57
SYNE1-214ENST00000454018 MPRIPQ6WCQ1 1025 aa11.5□□□□□ -0.57
SYNE1-214ENST00000454018 PODXL2Q9NZ53 605 aa11.5□□□□□ -0.57
SYNE1-214ENST00000454018 RNMTO43148 476 aaKnown RBP11.49□□□□□ -0.57
SYNE1-214ENST00000454018 EFCAB3Q8N7B9 438 aa11.49□□□□□ -0.57
SYNE1-214ENST00000454018 GPBP1L1Q9HC44 474 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-214ENST00000454018 RRP7AQ9Y3A4 280 aaKnown RBP11.49□□□□□ -0.57
SYNE1-214ENST00000454018 COL5A3P25940 1745 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-214ENST00000454018 C5P01031 1676 aa11.48□□□□□ -0.57
SYNE1-214ENST00000454018 CCDC27Q2M243 656 aa11.48□□□□□ -0.57
SYNE1-214ENST00000454018 SMYD5Q6GMV2 418 aa11.48□□□□□ -0.57
SYNE1-214ENST00000454018 TEFQ10587 303 aa11.47□□□□□ -0.57
SYNE1-214ENST00000454018 MCM10Q7L590 875 aa11.47□□□□□ -0.57
SYNE1-214ENST00000454018 ZNF579Q8NAF0 562 aaKnown RBP11.47□□□□□ -0.57
SYNE1-214ENST00000454018 IL17REQ8NFR9 667 aa11.47□□□□□ -0.57
SYNE1-214ENST00000454018 SLC52A2Q9HAB3 445 aa11.47□□□□□ -0.57
SYNE1-214ENST00000454018 TMOD3Q9NYL9 352 aa11.47□□□□□ -0.57
SYNE1-214ENST00000454018 TJP1Q07157 1748 aa11.47□□□□□ -0.57
SYNE1-214ENST00000454018 NUP188Q5SRE5 1749 aa11.46□□□□□ -0.57
SYNE1-214ENST00000454018 PITPNM1O00562 1244 aa11.46□□□□□ -0.57
SYNE1-214ENST00000454018 CABP4P57796 275 aa11.46□□□□□ -0.57
SYNE1-214ENST00000454018 CALD1Q05682 793 aaKnown RBP11.46□□□□□ -0.57
SYNE1-214ENST00000454018 SYTL4Q96C24 671 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-214ENST00000454018 ACSBG1Q96GR2 724 aa11.46□□□□□ -0.57
SYNE1-214ENST00000454018 LGR6Q9HBX8 967 aa11.46□□□□□ -0.57
SYNE1-214ENST00000454018 TRIM35Q9UPQ4 493 aa11.46□□□□□ -0.57
SYNE1-214ENST00000454018 CACNA1FO60840 1977 aa11.46□□□□□ -0.58
SYNE1-214ENST00000454018 PRIM1P49642 420 aaKnown RBP11.45□□□□□ -0.58
SYNE1-214ENST00000454018 POTEHQ6S545 545 aa11.45□□□□□ -0.58
SYNE1-214ENST00000454018 ILDR2Q71H61 639 aa11.45□□□□□ -0.58
SYNE1-214ENST00000454018 LARP6Q9BRS8 491 aaKnown RBP11.45□□□□□ -0.58
SYNE1-214ENST00000454018 KCPQ6ZWJ8 1503 aa11.45□□□□□ -0.58
SYNE1-214ENST00000454018 TRIM37O94972 964 aa11.45□□□□□ -0.58
SYNE1-214ENST00000454018 DCTN1Q14203 1278 aa11.45□□□□□ -0.58
SYNE1-214ENST00000454018 KCNQ2O43526 872 aa11.44□□□□□ -0.58
SYNE1-214ENST00000454018 CHADLQ6NUI6 762 aa11.44□□□□□ -0.58
SYNE1-214ENST00000454018 CCDC125Q86Z20 511 aa11.44□□□□□ -0.58
SYNE1-214ENST00000454018 WWC1Q8IX03 1113 aa11.44□□□□□ -0.58
SYNE1-214ENST00000454018 THUMPD2Q9BTF0 503 aaKnown RBP11.44□□□□□ -0.58
SYNE1-214ENST00000454018 IL16Q14005 1332 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 HNRNPUQ00839 825 aaKnown RBP eCLIP11.43□□□□□ -0.58
SYNE1-214ENST00000454018 SF3B2Q13435 895 aaKnown RBP11.43□□□□□ -0.58
SYNE1-214ENST00000454018 NFATC2IPQ8NCF5 419 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 IL27Q8NEV9 243 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 PIGBQ92521 554 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 AK7Q96M32 723 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 ZMYND15Q9H091 742 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 PALLDQ8WX93 1383 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 QSER1Q2KHR3 1735 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 TUBGCP6Q96RT7 1819 aa11.43□□□□□ -0.58
SYNE1-214ENST00000454018 ZNF521Q96K83 1311 aa11.42□□□□□ -0.58
SYNE1-214ENST00000454018 TAF7Q15545 349 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-214ENST00000454018 SMARCC1Q92922 1105 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-214ENST00000454018 BABAM1Q9NWV8 329 aa11.42□□□□□ -0.58
SYNE1-214ENST00000454018 ZBED9Q6R2W3 1325 aa11.42□□□□□ -0.58
SYNE1-214ENST00000454018 SENP3-EIF4A1A0A087X0R7 540 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 BTBD11A6QL63 1104 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 MFSD10Q14728 455 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 PTF1AQ7RTS3 328 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 WDR63Q8IWG1 891 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 IFT57Q9NWB7 429 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 SALL2Q9Y467 1007 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-214ENST00000454018 ARIH1Q9Y4X5 557 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-214ENST00000454018 UBR3Q6ZT12 1888 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 MYH14Q7Z406 1995 aaKnown RBP11.41□□□□□ -0.58
SYNE1-214ENST00000454018 C4BP0C0L5 1744 aa11.41□□□□□ -0.58
SYNE1-214ENST00000454018 BAG6P46379 1132 aa11.4□□□□□ -0.58
SYNE1-214ENST00000454018 GNAI1P63096 354 aa11.4□□□□□ -0.58
SYNE1-214ENST00000454018 TTC5Q8N0Z6 440 aa11.4□□□□□ -0.58
SYNE1-214ENST00000454018 PLSCR1O15162 318 aa11.4□□□□□ -0.59
SYNE1-214ENST00000454018 APBA3O96018 575 aa11.4□□□□□ -0.59
SYNE1-214ENST00000454018 PDE4AP27815 886 aa11.4□□□□□ -0.59
SYNE1-214ENST00000454018 RBM26Q5T8P6 1007 aaKnown RBP11.4□□□□□ -0.59
SYNE1-214ENST00000454018 ZNF790Q6PG37 636 aa11.4□□□□□ -0.59
SYNE1-214ENST00000454018 ATG3Q9NT62 314 aa11.4□□□□□ -0.59
SYNE1-214ENST00000454018 TSPYL4Q9UJ04 414 aa11.4□□□□□ -0.59
SYNE1-214ENST00000454018 ASAP1Q9ULH1 1129 aa11.4□□□□□ -0.59
SYNE1-214ENST00000454018 ZNF853P0CG23 659 aa11.39□□□□□ -0.59
SYNE1-214ENST00000454018 IFNL1Q8IU54 200 aa11.39□□□□□ -0.59
SYNE1-214ENST00000454018 UPF1Q92900 1129 aaKnown RBP eCLIP11.39□□□□□ -0.59
SYNE1-214ENST00000454018 CHL1O00533 1208 aa11.38□□□□□ -0.59
SYNE1-214ENST00000454018 GOLGA2Q08379 1002 aa11.38□□□□□ -0.59
SYNE1-214ENST00000454018 SLC39A6Q13433 755 aa11.38□□□□□ -0.59
SYNE1-214ENST00000454018 KDM4CQ9H3R0 1056 aa11.38□□□□□ -0.59
SYNE1-214ENST00000454018 C4AP0C0L4 1744 aa11.38□□□□□ -0.59
SYNE1-214ENST00000454018 HEG1Q9ULI3 1381 aa11.37□□□□□ -0.59
SYNE1-214ENST00000454018 SLC27A3Q5K4L6 730 aa11.37□□□□□ -0.59
SYNE1-214ENST00000454018 FMNL2Q96PY5 1086 aa11.37□□□□□ -0.59
SYNE1-214ENST00000454018 CRISPLD2Q9H0B8 497 aa11.37□□□□□ -0.59
SYNE1-214ENST00000454018 MYH16Q9H6N6 1097 aa11.37□□□□□ -0.59
SYNE1-214ENST00000454018 MBIPQ9NS73 344 aa11.37□□□□□ -0.59
SYNE1-214ENST00000454018 FARP1Q9Y4F1 1045 aaPredicted RBP11.37□□□□□ -0.59
SYNE1-214ENST00000454018 LAS1LQ9Y4W2 734 aaKnown RBP11.37□□□□□ -0.59
SYNE1-214ENST00000454018 LOC102724428A0A0B4J2F2 783 aa11.36□□□□□ -0.59
SYNE1-214ENST00000454018 E9PSI1 815 aa11.36□□□□□ -0.59
SYNE1-214ENST00000454018 HMGB2P26583 209 aaKnown RBP11.36□□□□□ -0.59
SYNE1-214ENST00000454018 MLLT3P42568 568 aaPredicted RBP11.36□□□□□ -0.59
SYNE1-214ENST00000454018 SIK1P57059 783 aa11.36□□□□□ -0.59
SYNE1-214ENST00000454018 KRI1Q8N9T8 703 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms