RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 USPL1Q5W0Q7 1092 aa20.3■□□□□ 0.84
CHD3-205ENST00000449744 FMNL2Q96PY5 1086 aa20.3■□□□□ 0.84
CHD3-205ENST00000449744 SIPA1L3O60292 1781 aaPredicted RBP20.29■□□□□ 0.84
CHD3-205ENST00000449744 MCM10Q7L590 875 aa20.29■□□□□ 0.84
CHD3-205ENST00000449744 COL15A1P39059 1388 aa20.29■□□□□ 0.84
CHD3-205ENST00000449744 SENP3-EIF4A1A0A087X0R7 540 aa20.28■□□□□ 0.84
CHD3-205ENST00000449744 HTATSF1O43719 755 aaKnown RBP20.28■□□□□ 0.84
CHD3-205ENST00000449744 PNNQ9H307 717 aaKnown RBP20.28■□□□□ 0.84
CHD3-205ENST00000449744 C10orf71Q711Q0 1435 aa20.27■□□□□ 0.84
CHD3-205ENST00000449744 C1QTNF8P60827 252 aa20.27■□□□□ 0.84
CHD3-205ENST00000449744 NARFQ9UHQ1 456 aa20.27■□□□□ 0.84
CHD3-205ENST00000449744 PXDNLA1KZ92 1463 aa20.26■□□□□ 0.83
CHD3-205ENST00000449744 A0A087WZG4 1122 aa20.26■□□□□ 0.83
CHD3-205ENST00000449744 DCTN1Q14203 1278 aa20.26■□□□□ 0.83
CHD3-205ENST00000449744 NPM2Q86SE8 214 aaKnown RBP20.26■□□□□ 0.83
CHD3-205ENST00000449744 KIF13BQ9NQT8 1826 aa20.25■□□□□ 0.83
CHD3-205ENST00000449744 A0A0G2JLW4 131 aa20.25■□□□□ 0.83
CHD3-205ENST00000449744 KCNQ3O43525 872 aa20.25■□□□□ 0.83
CHD3-205ENST00000449744 DDR1Q08345 913 aa20.25■□□□□ 0.83
CHD3-205ENST00000449744 ZNF330Q9Y3S2 320 aaPredicted RBP20.25■□□□□ 0.83
CHD3-205ENST00000449744 MAPK8IP3Q9UPT6 1336 aa20.25■□□□□ 0.83
CHD3-205ENST00000449744 GIGYF1O75420 1035 aaPredicted RBP20.24■□□□□ 0.83
CHD3-205ENST00000449744 POLRMTO00411 1230 aaKnown RBP20.23■□□□□ 0.83
CHD3-205ENST00000449744 DPEP1P16444 411 aa20.23■□□□□ 0.83
CHD3-205ENST00000449744 TM4SF1P30408 202 aa20.23■□□□□ 0.83
CHD3-205ENST00000449744 EIF5P55010 431 aaKnown RBP20.23■□□□□ 0.83
CHD3-205ENST00000449744 N4BP2Q86UW6 1770 aaPredicted RBP20.22■□□□□ 0.83
CHD3-205ENST00000449744 TAF7Q15545 349 aaPredicted RBP20.22■□□□□ 0.83
CHD3-205ENST00000449744 PLEKHF1Q96S99 279 aa20.22■□□□□ 0.83
CHD3-205ENST00000449744 BCS1LQ9Y276 419 aa20.22■□□□□ 0.83
CHD3-205ENST00000449744 IL6STP40189 918 aaPredicted RBP20.21■□□□□ 0.83
CHD3-205ENST00000449744 NFIXQ14938 502 aa20.21■□□□□ 0.83
CHD3-205ENST00000449744 A1BGP04217 495 aa20.2■□□□□ 0.82
CHD3-205ENST00000449744 SNRPA1P09661 255 aaKnown RBP20.2■□□□□ 0.82
CHD3-205ENST00000449744 NFE2L2Q16236 605 aa20.2■□□□□ 0.82
CHD3-205ENST00000449744 BCL2L12Q9HB09 334 aa20.2■□□□□ 0.82
CHD3-205ENST00000449744 MYBBP1AQ9BQG0 1328 aaKnown RBP20.2■□□□□ 0.82
CHD3-205ENST00000449744 KIAA1551Q9HCM1 1747 aa20.19■□□□□ 0.82
CHD3-205ENST00000449744 PNISRQ8TF01 805 aaKnown RBP20.19■□□□□ 0.82
CHD3-205ENST00000449744 USP16Q9Y5T5 823 aa20.19■□□□□ 0.82
CHD3-205ENST00000449744 SERPINB2P05120 415 aa20.18■□□□□ 0.82
CHD3-205ENST00000449744 BICDL1Q6ZP65 573 aa20.18■□□□□ 0.82
CHD3-205ENST00000449744 PIM2Q9P1W9 311 aa20.18■□□□□ 0.82
CHD3-205ENST00000449744 TBC1D2BQ9UPU7 963 aa20.18■□□□□ 0.82
CHD3-205ENST00000449744 DLG5Q8TDM6 1919 aa20.16■□□□□ 0.82
CHD3-205ENST00000449744 PRAMEF22A3QJZ6 481 aa20.16■□□□□ 0.82
CHD3-205ENST00000449744 MIS18AQ9NYP9 233 aa20.16■□□□□ 0.82
CHD3-205ENST00000449744 KCNA3P22001 575 aa20.15■□□□□ 0.82
CHD3-205ENST00000449744 CHRNA5P30532 468 aa20.15■□□□□ 0.82
CHD3-205ENST00000449744 ARHGAP27Q6ZUM4 889 aa20.15■□□□□ 0.82
CHD3-205ENST00000449744 DZIP3Q86Y13 1208 aaKnown RBP20.15■□□□□ 0.82
CHD3-205ENST00000449744 GOLGB1Q14789 3259 aaKnown RBP20.15■□□□□ 0.82
CHD3-205ENST00000449744 ATP10DQ9P241 1426 aa20.14■□□□□ 0.81
CHD3-205ENST00000449744 ZEB1P37275 1124 aaPredicted RBP20.14■□□□□ 0.81
CHD3-205ENST00000449744 PIP4K2AP48426 406 aaPredicted RBP20.14■□□□□ 0.81
CHD3-205ENST00000449744 DALRD3Q5D0E6 543 aaKnown RBP20.14■□□□□ 0.81
CHD3-205ENST00000449744 TBC1D9BQ66K14 1250 aa20.14■□□□□ 0.81
CHD3-205ENST00000449744 THUMPD2Q9BTF0 503 aaKnown RBP20.14■□□□□ 0.81
CHD3-205ENST00000449744 RIPK4P57078 832 aa20.13■□□□□ 0.81
CHD3-205ENST00000449744 WDR43Q15061 677 aaKnown RBP eCLIP20.13■□□□□ 0.81
CHD3-205ENST00000449744 AFDNP55196 1824 aaKnown RBP20.13■□□□□ 0.81
CHD3-205ENST00000449744 SCN7AQ01118 1682 aa20.13■□□□□ 0.81
CHD3-205ENST00000449744 CAMTA2O94983 1202 aa20.12■□□□□ 0.81
CHD3-205ENST00000449744 BRCA1P38398 1863 aaKnown RBP20.11■□□□□ 0.81
CHD3-205ENST00000449744 NRXN2Q9P2S2 1712 aa20.11■□□□□ 0.81
CHD3-205ENST00000449744 NPHP1O15259 732 aa20.11■□□□□ 0.81
CHD3-205ENST00000449744 SETDB2Q96T68 719 aa20.11■□□□□ 0.81
CHD3-205ENST00000449744 ADCY9O60503 1353 aa20.1■□□□□ 0.81
CHD3-205ENST00000449744 CARMIL3Q8ND23 1372 aa20.1■□□□□ 0.81
CHD3-205ENST00000449744 LMOD3Q0VAK6 560 aa20.1■□□□□ 0.81
CHD3-205ENST00000449744 GPBP1L1Q9HC44 474 aaPredicted RBP20.1■□□□□ 0.81
CHD3-205ENST00000449744 ZNF652Q9Y2D9 606 aa20.1■□□□□ 0.81
CHD3-205ENST00000449744 TMPOP42166 694 aaKnown RBP20.09■□□□□ 0.81
CHD3-205ENST00000449744 EIF4A1P60842 406 aaKnown RBP20.09■□□□□ 0.81
CHD3-205ENST00000449744 ZNF526Q8TF50 670 aaPredicted RBP20.09■□□□□ 0.81
CHD3-205ENST00000449744 KDM3BQ7LBC6 1761 aa20.08■□□□□ 0.81
CHD3-205ENST00000449744 NBPF26B4DH59 902 aa20.08■□□□□ 0.81
CHD3-205ENST00000449744 H0YIN7 160 aa20.08■□□□□ 0.81
CHD3-205ENST00000449744 NBPF10Q6P3W6 841 aaKnown RBP20.08■□□□□ 0.81
CHD3-205ENST00000449744 C2CD5Q86YS7 1000 aa20.08■□□□□ 0.81
CHD3-205ENST00000449744 CCDC146Q8IYE0 955 aa20.08■□□□□ 0.81
CHD3-205ENST00000449744 NBPF15Q8N660 670 aa20.08■□□□□ 0.81
CHD3-205ENST00000449744 PRKRIP1Q9H875 184 aaPredicted RBP20.08■□□□□ 0.81
CHD3-205ENST00000449744 TSPYL4Q9UJ04 414 aa20.08■□□□□ 0.81
CHD3-205ENST00000449744 ARFGEF1Q9Y6D6 1849 aa20.08■□□□□ 0.8
CHD3-205ENST00000449744 CLEC4GQ6UXB4 293 aa20.07■□□□□ 0.8
CHD3-205ENST00000449744 LAMB4A4D0S4 1761 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 BCORQ6W2J9 1755 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 PDE6BP35913 854 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 NEUROD2Q15784 382 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 PRR5LQ6MZQ0 368 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 CNBD1Q8NA66 436 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 RUNDC1Q96C34 613 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 BRIP1Q9BX63 1249 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 PDZRN3Q9UPQ7 1066 aa20.06■□□□□ 0.8
CHD3-205ENST00000449744 RRP7AQ9Y3A4 280 aaKnown RBP20.06■□□□□ 0.8
CHD3-205ENST00000449744 ST5P78524 1137 aa20.05■□□□□ 0.8
CHD3-205ENST00000449744 CCDC24Q8N4L8 307 aa20.05■□□□□ 0.8
CHD3-205ENST00000449744 NGEFQ8N5V2 710 aa20.05■□□□□ 0.8
CHD3-205ENST00000449744 TTLL6Q8N841 843 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 616.4 ms