RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 CEP350Q5VT06 3117 aa18.4■□□□□ 0.54
PDLIM2-213ENST00000448520 MRC1P22897 1456 aa18.39■□□□□ 0.54
PDLIM2-213ENST00000448520 BRCA1P38398 1863 aaKnown RBP18.39■□□□□ 0.54
PDLIM2-213ENST00000448520 TTC5Q8N0Z6 440 aa18.39■□□□□ 0.53
PDLIM2-213ENST00000448520 TEX13AQ9BXU3 409 aaPredicted RBP18.39■□□□□ 0.53
PDLIM2-213ENST00000448520 VIRMAQ69YN4 1812 aaKnown RBP18.38■□□□□ 0.53
PDLIM2-213ENST00000448520 ARFGEF1Q9Y6D6 1849 aa18.38■□□□□ 0.53
PDLIM2-213ENST00000448520 GNAT3A8MTJ3 354 aa18.38■□□□□ 0.53
PDLIM2-213ENST00000448520 U2SURPO15042 1029 aaKnown RBP18.38■□□□□ 0.53
PDLIM2-213ENST00000448520 TOMM70O94826 608 aa18.38■□□□□ 0.53
PDLIM2-213ENST00000448520 A0A087WZG4 1122 aa18.37■□□□□ 0.53
PDLIM2-213ENST00000448520 TEFQ10587 303 aa18.37■□□□□ 0.53
PDLIM2-213ENST00000448520 NFIXQ14938 502 aa18.37■□□□□ 0.53
PDLIM2-213ENST00000448520 C9orf131Q5VYM1 1079 aa18.37■□□□□ 0.53
PDLIM2-213ENST00000448520 ZBTB1Q9Y2K1 713 aa18.37■□□□□ 0.53
PDLIM2-213ENST00000448520 CHRNA5P30532 468 aa18.36■□□□□ 0.53
PDLIM2-213ENST00000448520 COL15A1P39059 1388 aa18.36■□□□□ 0.53
PDLIM2-213ENST00000448520 IL17REQ8NFR9 667 aa18.36■□□□□ 0.53
PDLIM2-213ENST00000448520 ADAMTS7Q9UKP4 1686 aa18.35■□□□□ 0.53
PDLIM2-213ENST00000448520 SERPINB2P05120 415 aa18.35■□□□□ 0.53
PDLIM2-213ENST00000448520 CANXP27824 592 aaKnown RBP18.35■□□□□ 0.53
PDLIM2-213ENST00000448520 ZNF790Q6PG37 636 aa18.35■□□□□ 0.53
PDLIM2-213ENST00000448520 KCPQ6ZWJ8 1503 aa18.34■□□□□ 0.53
PDLIM2-213ENST00000448520 EIF5P55010 431 aaKnown RBP18.34■□□□□ 0.53
PDLIM2-213ENST00000448520 CFAP53Q96M91 514 aa18.34■□□□□ 0.53
PDLIM2-213ENST00000448520 BCL2L12Q9HB09 334 aa18.34■□□□□ 0.53
PDLIM2-213ENST00000448520 APLP1P51693 650 aa18.33■□□□□ 0.52
PDLIM2-213ENST00000448520 NUDCQ9Y266 331 aa18.33■□□□□ 0.52
PDLIM2-213ENST00000448520 KDM2BQ8NHM5 1336 aa18.32■□□□□ 0.52
PDLIM2-213ENST00000448520 ZNF496Q96IT1 587 aaPredicted RBP18.32■□□□□ 0.52
PDLIM2-213ENST00000448520 PRKRIP1Q9H875 184 aaPredicted RBP18.32■□□□□ 0.52
PDLIM2-213ENST00000448520 NMRK2Q9NPI5 230 aa18.32■□□□□ 0.52
PDLIM2-213ENST00000448520 RNF181Q9P0P0 153 aa18.32■□□□□ 0.52
PDLIM2-213ENST00000448520 NPM2Q86SE8 214 aaKnown RBP18.31■□□□□ 0.52
PDLIM2-213ENST00000448520 C16orf71Q8IYS4 520 aaPredicted RBP18.31■□□□□ 0.52
PDLIM2-213ENST00000448520 TTLL6Q8N841 843 aa18.31■□□□□ 0.52
PDLIM2-213ENST00000448520 FMNL2Q96PY5 1086 aa18.31■□□□□ 0.52
PDLIM2-213ENST00000448520 PDZRN3Q9UPQ7 1066 aa18.31■□□□□ 0.52
PDLIM2-213ENST00000448520 COL3A1P02461 1466 aaPredicted RBP18.31■□□□□ 0.52
PDLIM2-213ENST00000448520 HEG1Q9ULI3 1381 aa18.3■□□□□ 0.52
PDLIM2-213ENST00000448520 H0YIN7 160 aa18.3■□□□□ 0.52
PDLIM2-213ENST00000448520 ANP32CO43423 234 aa18.3■□□□□ 0.52
PDLIM2-213ENST00000448520 IL6STP40189 918 aaPredicted RBP18.3■□□□□ 0.52
PDLIM2-213ENST00000448520 RBM46Q8TBY0 533 aaKnown RBP18.3■□□□□ 0.52
PDLIM2-213ENST00000448520 AFDNP55196 1824 aaKnown RBP18.3■□□□□ 0.52
PDLIM2-213ENST00000448520 UBR2Q8IWV8 1755 aa18.3■□□□□ 0.52
PDLIM2-213ENST00000448520 SBF1O95248 1867 aa18.29■□□□□ 0.52
PDLIM2-213ENST00000448520 ZC3H4Q9UPT8 1303 aaKnown RBP18.28■□□□□ 0.52
PDLIM2-213ENST00000448520 BTBD11A6QL63 1104 aa18.28■□□□□ 0.52
PDLIM2-213ENST00000448520 PRKAR2BP31323 418 aa18.28■□□□□ 0.52
PDLIM2-213ENST00000448520 C2CD5Q86YS7 1000 aa18.28■□□□□ 0.52
PDLIM2-213ENST00000448520 MIER1Q8N108 512 aa18.28■□□□□ 0.52
PDLIM2-213ENST00000448520 CEMIPQ8WUJ3 1361 aa18.28■□□□□ 0.52
PDLIM2-213ENST00000448520 NRXN2Q9P2S2 1712 aa18.27■□□□□ 0.52
PDLIM2-213ENST00000448520 PPP2R1AP30153 589 aa18.27■□□□□ 0.52
PDLIM2-213ENST00000448520 FSTL1Q12841 308 aa18.27■□□□□ 0.52
PDLIM2-213ENST00000448520 BICDL1Q6ZP65 573 aa18.27■□□□□ 0.52
PDLIM2-213ENST00000448520 PHACTR3Q96KR7 559 aa18.27■□□□□ 0.52
PDLIM2-213ENST00000448520 RSPH6AQ9H0K4 717 aa18.27■□□□□ 0.52
PDLIM2-213ENST00000448520 LMNB1P20700 586 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 PDE6BP35913 854 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 RALBP1Q15311 655 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 IFFO2Q5TF58 517 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 TBC1D9BQ66K14 1250 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 RTF1Q92541 710 aaKnown RBP18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 BRIP1Q9BX63 1249 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 RRAGCQ9HB90 399 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 TBC1D2BQ9UPU7 963 aa18.26■□□□□ 0.51
PDLIM2-213ENST00000448520 A1BGP04217 495 aa18.25■□□□□ 0.51
PDLIM2-213ENST00000448520 SETDB2Q96T68 719 aa18.25■□□□□ 0.51
PDLIM2-213ENST00000448520 ZNF330Q9Y3S2 320 aaPredicted RBP18.25■□□□□ 0.51
PDLIM2-213ENST00000448520 U2AF1L5P0DN76 240 aaPredicted RBP18.24■□□□□ 0.51
PDLIM2-213ENST00000448520 U2AF1Q01081 240 aaKnown RBP eCLIP18.24■□□□□ 0.51
PDLIM2-213ENST00000448520 DNAJC5GQ8N7S2 189 aa18.24■□□□□ 0.51
PDLIM2-213ENST00000448520 SIPA1L3O60292 1781 aaPredicted RBP18.23■□□□□ 0.51
PDLIM2-213ENST00000448520 HTATSF1O43719 755 aaKnown RBP18.23■□□□□ 0.51
PDLIM2-213ENST00000448520 CCDC184Q52MB2 194 aa18.23■□□□□ 0.51
PDLIM2-213ENST00000448520 ZNF622Q969S3 477 aaKnown RBP eCLIP18.23■□□□□ 0.51
PDLIM2-213ENST00000448520 MYBBP1AQ9BQG0 1328 aaKnown RBP18.23■□□□□ 0.51
PDLIM2-213ENST00000448520 CARMIL3Q8ND23 1372 aa18.22■□□□□ 0.51
PDLIM2-213ENST00000448520 GLTPD2A6NH11 291 aa18.22■□□□□ 0.51
PDLIM2-213ENST00000448520 KCNQ3O43525 872 aa18.22■□□□□ 0.51
PDLIM2-213ENST00000448520 SNRPA1P09661 255 aaKnown RBP18.22■□□□□ 0.51
PDLIM2-213ENST00000448520 RASSF7Q02833 373 aa18.22■□□□□ 0.51
PDLIM2-213ENST00000448520 USP16Q9Y5T5 823 aa18.22■□□□□ 0.51
PDLIM2-213ENST00000448520 CAMTA2O94983 1202 aa18.21■□□□□ 0.51
PDLIM2-213ENST00000448520 PRR5LQ6MZQ0 368 aa18.21■□□□□ 0.51
PDLIM2-213ENST00000448520 CLEC4GQ6UXB4 293 aa18.21■□□□□ 0.51
PDLIM2-213ENST00000448520 DZIP3Q86Y13 1208 aaKnown RBP18.21■□□□□ 0.51
PDLIM2-213ENST00000448520 DLEC1Q9Y238 1755 aa18.2■□□□□ 0.5
PDLIM2-213ENST00000448520 NPHP1O15259 732 aa18.2■□□□□ 0.5
PDLIM2-213ENST00000448520 VEGFAP15692 232 aaPredicted RBP18.2■□□□□ 0.5
PDLIM2-213ENST00000448520 CNKSR1Q969H4 720 aa18.2■□□□□ 0.5
PDLIM2-213ENST00000448520 ST5P78524 1137 aa18.19■□□□□ 0.5
PDLIM2-213ENST00000448520 CCDC88AQ3V6T2 1871 aa18.19■□□□□ 0.5
PDLIM2-213ENST00000448520 DPY19L2Q6NUT2 758 aa18.19■□□□□ 0.5
PDLIM2-213ENST00000448520 CNBD1Q8NA66 436 aa18.19■□□□□ 0.5
PDLIM2-213ENST00000448520 SMC1BQ8NDV3 1235 aa18.19■□□□□ 0.5
PDLIM2-213ENST00000448520 NFKBIEO00221 500 aa18.18■□□□□ 0.5
PDLIM2-213ENST00000448520 RGL2O15211 777 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms