RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 KSR2Q6VAB6 950 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 STK11IPQ8N1F8 1099 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 UNC13BO14795 1591 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 CROCC2H7BZ55 1655 aa8.87□□□□□ -0.99
SYNE1-213ENST00000448038 CHAF1AQ13111 956 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-213ENST00000448038 CAVIN4Q5BKX8 364 aa8.86□□□□□ -0.99
SYNE1-213ENST00000448038 BCL11BQ9C0K0 894 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-213ENST00000448038 LDHAL6AQ6ZMR3 332 aa8.86□□□□□ -0.99
SYNE1-213ENST00000448038 CREBRFQ8IUR6 639 aa8.86□□□□□ -0.99
SYNE1-213ENST00000448038 RPGRQ92834 1020 aaKnown RBP8.86□□□□□ -0.99
SYNE1-213ENST00000448038 ANKIB1Q9P2G1 1089 aa8.86□□□□□ -0.99
SYNE1-213ENST00000448038 CLTCL1P53675 1640 aa8.86□□□□□ -0.99
SYNE1-213ENST00000448038 RBM5P52756 815 aaKnown RBP eCLIP8.86□□□□□ -0.99
SYNE1-213ENST00000448038 A2ML1A8K2U0 1454 aa8.86□□□□□ -0.99
SYNE1-213ENST00000448038 LRRIQ1Q96JM4 1722 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 KDM4AO75164 1064 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 BICD2Q8TD16 824 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 CDCA7Q9BWT1 371 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-213ENST00000448038 ALDH1L1O75891 902 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 IGHDP01880 384 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 SLC5A1P13866 664 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 CTNNA3Q9UI47 895 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 GRM8O00222 908 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 XBP1P17861 261 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 TDO2P48775 406 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 CDC5LQ99459 802 aaKnown RBP8.85□□□□□ -0.99
SYNE1-213ENST00000448038 LGR6Q9HBX8 967 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 TRIM35Q9UPQ4 493 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 RNF17Q9BXT8 1623 aaKnown RBP8.85□□□□□ -0.99
SYNE1-213ENST00000448038 FAM135BQ49AJ0 1406 aa8.85□□□□□ -0.99
SYNE1-213ENST00000448038 IKQ13123 557 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-213ENST00000448038 BLOC1S2Q6QNY1 142 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 AIDAQ96BJ3 306 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 TNNQ9UQP3 1299 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 ZNF790Q6PG37 636 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 NBPF5PQ86XG9 351 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-213ENST00000448038 PCDHB15Q9Y5E8 787 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 SPHKAPQ2M3C7 1700 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 PRR36Q9H6K5 1346 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 ANKRD1Q15327 319 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 MAP3K4Q9Y6R4 1608 aa8.84□□□□□ -0.99
SYNE1-213ENST00000448038 DCAF8L1A6NGE4 600 aa8.84□□□□□ -1
SYNE1-213ENST00000448038 LINS1Q8NG48 757 aa8.84□□□□□ -1
SYNE1-213ENST00000448038 JAKMIP1Q96N16 626 aaKnown RBP8.84□□□□□ -1
SYNE1-213ENST00000448038 BRMS1Q9HCU9 246 aa8.84□□□□□ -1
SYNE1-213ENST00000448038 TCEAL9Q9UHQ7 104 aa8.84□□□□□ -1
SYNE1-213ENST00000448038 ATP7BP35670 1465 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 DDX46Q7L014 1031 aaKnown RBP8.83□□□□□ -1
SYNE1-213ENST00000448038 DZIP3Q86Y13 1208 aaKnown RBP8.83□□□□□ -1
SYNE1-213ENST00000448038 ECHDC1Q9NTX5 307 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 BABAM1Q9NWV8 329 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 SOS1Q07889 1333 aaPredicted RBP8.83□□□□□ -1
SYNE1-213ENST00000448038 KIAA2012Q0VF49 1180 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 STK3Q13188 491 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 HDAC1Q13547 482 aaPredicted RBP8.83□□□□□ -1
SYNE1-213ENST00000448038 RTN4Q9NQC3 1192 aaKnown RBP8.83□□□□□ -1
SYNE1-213ENST00000448038 PDCP20941 246 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 NCBP3Q53F19 620 aaKnown RBP8.83□□□□□ -1
SYNE1-213ENST00000448038 SETDB2Q96T68 719 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 CHL1O00533 1208 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 RLBP1P12271 317 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 ATP2B2Q01814 1243 aa8.83□□□□□ -1
SYNE1-213ENST00000448038 PHAXQ9H814 394 aaKnown RBP8.83□□□□□ -1
SYNE1-213ENST00000448038 NIP7Q9Y221 180 aaKnown RBP eCLIP8.83□□□□□ -1
SYNE1-213ENST00000448038 KRT32Q14532 448 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 ANKRD44Q8N8A2 993 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 DDX21Q9NR30 783 aaKnown RBP eCLIP8.82□□□□□ -1
SYNE1-213ENST00000448038 LMBR1LQ6UX01 489 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 SYNMO15061 1565 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 MAP3K12Q12852 859 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 TPD52L1Q16890 204 aaPredicted RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 FAM98CQ17RN3 349 aaKnown RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 CWF19L2Q2TBE0 894 aaKnown RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 CCDC152Q4G0S7 254 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 RHPN1Q8TCX5 695 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 SLC52A2Q9HAB3 445 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 CEP152O94986 1710 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 BECN2A8MW95 431 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 K7ELQ4 463 aaPredicted RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 ZSCAN29Q8IWY8 852 aaPredicted RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 USP6P35125 1406 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 ZNF335Q9H4Z2 1342 aaPredicted RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 IMMTQ16891 758 aaKnown RBP8.82□□□□□ -1
SYNE1-213ENST00000448038 PDRG1Q9NUG6 133 aa8.82□□□□□ -1
SYNE1-213ENST00000448038 INSRP06213 1382 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 CCDC69A6NI79 296 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 ATP8B2P98198 1209 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 GOLGA6L19H0YKK7 550 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 C6orf229H3BNL8 230 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 ZNF219Q9P2Y4 722 aaPredicted RBP8.81□□□□□ -1
SYNE1-213ENST00000448038 RTCBQ9Y3I0 505 aaKnown RBP8.81□□□□□ -1
SYNE1-213ENST00000448038 TSHZ3Q63HK5 1081 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 CCDC73Q6ZRK6 1079 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 G2E3Q7L622 706 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 ST5P78524 1137 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 DZIP1Q86YF9 867 aaKnown RBP8.81□□□□□ -1
SYNE1-213ENST00000448038 EVI5LQ96CN4 794 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 NAP1L5Q96NT1 182 aaPredicted RBP8.81□□□□□ -1
SYNE1-213ENST00000448038 ZMYM4Q5VZL5 1548 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms