RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 ARHGEF1Q92888 912 aaKnown RBP3.34□□□□□ -1.87
LIG4-203ENST00000442234 AK7Q96M32 723 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 NOL10Q9BSC4 688 aaKnown RBP3.34□□□□□ -1.87
LIG4-203ENST00000442234 GJA3Q9Y6H8 435 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 C2orf72A6NCS6 295 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 TTC36A6NLP5 189 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 PLIN1O60240 522 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 PRIM1P49642 420 aaKnown RBP3.34□□□□□ -1.87
LIG4-203ENST00000442234 GPS2Q13227 327 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 FAM196AQ6ZSG2 479 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 KRT222Q8N1A0 295 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 DDX27Q96GQ7 796 aaKnown RBP3.34□□□□□ -1.87
LIG4-203ENST00000442234 CRBNQ96SW2 442 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 BCL2L12Q9HB09 334 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 BRMS1Q9HCU9 246 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 FEZ2Q9UHY8 353 aaPredicted RBP3.34□□□□□ -1.87
LIG4-203ENST00000442234 SH3BP1Q9Y3L3 701 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 A2MP01023 1474 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 PHLDB1Q86UU1 1377 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 SPATA31A6Q5VVP1 1343 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 PRKG1Q13976 671 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 COL13A1Q5TAT6 717 aaPredicted RBP3.34□□□□□ -1.88
LIG4-203ENST00000442234 NUTM1Q86Y26 1132 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 PRKRIP1Q9H875 184 aaPredicted RBP3.34□□□□□ -1.88
LIG4-203ENST00000442234 PRDM16Q9HAZ2 1276 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 NMRK2Q9NPI5 230 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 PLEKHH2Q8IVE3 1493 aa3.34□□□□□ -1.88
LIG4-203ENST00000442234 ZC3H13Q5T200 1668 aaKnown RBP3.34□□□□□ -1.88
LIG4-203ENST00000442234 REREQ9P2R6 1566 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 A0A0G2JLW4 131 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 DHX16O60231 1041 aaKnown RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 CAPN2P17655 700 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 BRPF1P55201 1214 aaPredicted RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 NBPF6Q5VWK0 638 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 RPAINQ86UA6 219 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 NBPF5PQ86XG9 351 aaPredicted RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 JARID2Q92833 1246 aaPredicted RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 NBPF4Q96M43 638 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 PPP1R9BQ96SB3 815 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 PCDHGA4Q9Y5G9 962 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 NCOA1Q15788 1441 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 FMN1Q68DA7 1419 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 PREX1Q8TCU6 1659 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 NUP153P49790 1475 aaKnown RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 ZNF518AQ6AHZ1 1483 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 IRF6O14896 467 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 TXNRD1Q16881 649 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 ARMCX6Q7L4S7 300 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 GAS2L3Q86XJ1 694 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 ANKRD20A12PQ8NF67 263 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 RNF181Q9P0P0 153 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 CCNL1Q9UK58 526 aaPredicted RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 TROQ12816 1431 aaPredicted RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 HTATSF1O43719 755 aaKnown RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 ATP6V1AP38606 617 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 PBX2P40425 430 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 PIP4K2AP48426 406 aaPredicted RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 RAD51AP2Q09MP3 1159 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 NBPF9Q3BBW0 867 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 TTC31Q49AM3 519 aaPredicted RBP3.33□□□□□ -1.88
LIG4-203ENST00000442234 NBPF11Q86T75 865 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 RNF214Q8ND24 703 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 AIDAQ96BJ3 306 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 CABP1Q9NZU7 370 aa3.33□□□□□ -1.88
LIG4-203ENST00000442234 MED1Q15648 1581 aaPredicted RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 KIF1CO43896 1103 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 LIG1P18858 919 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 CASQ1P31415 396 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 EIF4G2P78344 907 aaKnown RBP eCLIP3.32□□□□□ -1.88
LIG4-203ENST00000442234 SART3Q15020 963 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 C8orf34Q49A92 452 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 CAVIN1Q6NZI2 390 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 PLPP6Q8IY26 295 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 RAI14Q9P0K7 980 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 SUFUQ9UMX1 484 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 JRKLQ9Y4A0 524 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 CCDC18Q5T9S5 1454 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 TIAM1Q13009 1591 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 GNPATO15228 680 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 MAP2K2P36507 400 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 DSG2Q14126 1118 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 TTLL12Q14166 644 aaPredicted RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 TERF2Q15554 542 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 RAPGEF4Q8WZA2 1011 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 NECTIN2Q92692 538 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 TBC1D2Q9BYX2 928 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 CXorf56Q9H5V9 222 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 RRAGCQ9HB90 399 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 HECW1Q76N89 1606 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 ZCCHC11Q5TAX3 1644 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 A0A1B0GUL7 405 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 GUCY2CP25092 1073 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 HNRNPH2P55795 449 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 RRS1Q15050 365 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 E2F4Q16254 413 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 DNAJC21Q5F1R6 531 aaKnown RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 TTLL5Q6EMB2 1281 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 GIMAP7Q8NHV1 300 aa3.32□□□□□ -1.88
LIG4-203ENST00000442234 CCDC97Q96F63 343 aaPredicted RBP3.32□□□□□ -1.88
LIG4-203ENST00000442234 EPAS1Q99814 870 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms