RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 CANXP27824 592 aaKnown RBP26.36■■□□□ 1.81
SHROOM1-204ENST00000440118 RALBP1Q15311 655 aa26.36■■□□□ 1.81
SHROOM1-204ENST00000440118 MCM10Q7L590 875 aa26.36■■□□□ 1.81
SHROOM1-204ENST00000440118 ZNF496Q96IT1 587 aaPredicted RBP26.36■■□□□ 1.81
SHROOM1-204ENST00000440118 C10orf71Q711Q0 1435 aa26.35■■□□□ 1.81
SHROOM1-204ENST00000440118 MAPK8IP3Q9UPT6 1336 aa26.35■■□□□ 1.81
SHROOM1-204ENST00000440118 FKBP8Q14318 412 aa26.34■■□□□ 1.81
SHROOM1-204ENST00000440118 TEX13AQ9BXU3 409 aaPredicted RBP26.34■■□□□ 1.81
SHROOM1-204ENST00000440118 ZNF330Q9Y3S2 320 aaPredicted RBP26.34■■□□□ 1.81
SHROOM1-204ENST00000440118 USPL1Q5W0Q7 1092 aa26.33■■□□□ 1.81
SHROOM1-204ENST00000440118 NPM2Q86SE8 214 aaKnown RBP26.33■■□□□ 1.81
SHROOM1-204ENST00000440118 ZNF784Q8NCA9 323 aaPredicted RBP26.33■■□□□ 1.81
SHROOM1-204ENST00000440118 PNNQ9H307 717 aaKnown RBP26.33■■□□□ 1.81
SHROOM1-204ENST00000440118 PXDNLA1KZ92 1463 aa26.32■■□□□ 1.8
SHROOM1-204ENST00000440118 KIAA1551Q9HCM1 1747 aa26.31■■□□□ 1.8
SHROOM1-204ENST00000440118 DCTN1Q14203 1278 aa26.31■■□□□ 1.8
SHROOM1-204ENST00000440118 HTATSF1O43719 755 aaKnown RBP26.3■■□□□ 1.8
SHROOM1-204ENST00000440118 NARFQ9UHQ1 456 aa26.3■■□□□ 1.8
SHROOM1-204ENST00000440118 A0A087WZG4 1122 aa26.29■■□□□ 1.8
SHROOM1-204ENST00000440118 TGFB2P61812 414 aa26.29■■□□□ 1.8
SHROOM1-204ENST00000440118 SCN7AQ01118 1682 aa26.28■■□□□ 1.8
SHROOM1-204ENST00000440118 KCNQ3O43525 872 aa26.27■■□□□ 1.8
SHROOM1-204ENST00000440118 DDR1Q08345 913 aa26.27■■□□□ 1.8
SHROOM1-204ENST00000440118 MYBBP1AQ9BQG0 1328 aaKnown RBP26.27■■□□□ 1.8
SHROOM1-204ENST00000440118 AFDNP55196 1824 aaKnown RBP26.27■■□□□ 1.8
SHROOM1-204ENST00000440118 A0A0G2JLW4 131 aa26.26■■□□□ 1.79
SHROOM1-204ENST00000440118 BRCA1P38398 1863 aaKnown RBP26.25■■□□□ 1.79
SHROOM1-204ENST00000440118 BCS1LQ9Y276 419 aa26.25■■□□□ 1.79
SHROOM1-204ENST00000440118 DPEP1P16444 411 aa26.24■■□□□ 1.79
SHROOM1-204ENST00000440118 NFE2L2Q16236 605 aa26.24■■□□□ 1.79
SHROOM1-204ENST00000440118 LAMB4A4D0S4 1761 aa26.23■■□□□ 1.79
SHROOM1-204ENST00000440118 POLRMTO00411 1230 aaKnown RBP26.23■■□□□ 1.79
SHROOM1-204ENST00000440118 EIF5P55010 431 aaKnown RBP26.23■■□□□ 1.79
SHROOM1-204ENST00000440118 TAF7Q15545 349 aaPredicted RBP26.23■■□□□ 1.79
SHROOM1-204ENST00000440118 SNRPA1P09661 255 aaKnown RBP26.22■■□□□ 1.79
SHROOM1-204ENST00000440118 IL6STP40189 918 aaPredicted RBP26.22■■□□□ 1.79
SHROOM1-204ENST00000440118 NFIXQ14938 502 aa26.22■■□□□ 1.79
SHROOM1-204ENST00000440118 PLEKHF1Q96S99 279 aa26.22■■□□□ 1.79
SHROOM1-204ENST00000440118 KDM3BQ7LBC6 1761 aa26.22■■□□□ 1.79
SHROOM1-204ENST00000440118 A1BGP04217 495 aa26.21■■□□□ 1.79
SHROOM1-204ENST00000440118 BICDL1Q6ZP65 573 aa26.21■■□□□ 1.79
SHROOM1-204ENST00000440118 TM4SF1P30408 202 aa26.2■■□□□ 1.78
SHROOM1-204ENST00000440118 ZEB1P37275 1124 aaPredicted RBP26.2■■□□□ 1.78
SHROOM1-204ENST00000440118 TBC1D2BQ9UPU7 963 aa26.2■■□□□ 1.78
SHROOM1-204ENST00000440118 ARFGEF1Q9Y6D6 1849 aa26.2■■□□□ 1.78
SHROOM1-204ENST00000440118 BCORQ6W2J9 1755 aa26.2■■□□□ 1.78
SHROOM1-204ENST00000440118 WDR43Q15061 677 aaKnown RBP eCLIP26.19■■□□□ 1.78
SHROOM1-204ENST00000440118 PNISRQ8TF01 805 aaKnown RBP26.19■■□□□ 1.78
SHROOM1-204ENST00000440118 NRXN2Q9P2S2 1712 aa26.19■■□□□ 1.78
SHROOM1-204ENST00000440118 BCL2L12Q9HB09 334 aa26.18■■□□□ 1.78
SHROOM1-204ENST00000440118 MIS18AQ9NYP9 233 aa26.18■■□□□ 1.78
SHROOM1-204ENST00000440118 THUMPD2Q9BTF0 503 aaKnown RBP26.17■■□□□ 1.78
SHROOM1-204ENST00000440118 PIM2Q9P1W9 311 aa26.17■■□□□ 1.78
SHROOM1-204ENST00000440118 USP16Q9Y5T5 823 aa26.17■■□□□ 1.78
SHROOM1-204ENST00000440118 ATP10DQ9P241 1426 aa26.16■■□□□ 1.78
SHROOM1-204ENST00000440118 PRAMEF22A3QJZ6 481 aa26.16■■□□□ 1.78
SHROOM1-204ENST00000440118 NPHP1O15259 732 aa26.16■■□□□ 1.78
SHROOM1-204ENST00000440118 SERPINB2P05120 415 aa26.16■■□□□ 1.78
SHROOM1-204ENST00000440118 PIP4K2AP48426 406 aaPredicted RBP26.16■■□□□ 1.78
SHROOM1-204ENST00000440118 DZIP3Q86Y13 1208 aaKnown RBP26.15■■□□□ 1.78
SHROOM1-204ENST00000440118 CHRNA5P30532 468 aa26.14■■□□□ 1.78
SHROOM1-204ENST00000440118 DALRD3Q5D0E6 543 aaKnown RBP26.14■■□□□ 1.78
SHROOM1-204ENST00000440118 ARHGAP27Q6ZUM4 889 aa26.14■■□□□ 1.78
SHROOM1-204ENST00000440118 DLEC1Q9Y238 1755 aa26.14■■□□□ 1.78
SHROOM1-204ENST00000440118 CARMIL3Q8ND23 1372 aa26.13■■□□□ 1.77
SHROOM1-204ENST00000440118 GIGYF1O75420 1035 aaPredicted RBP26.13■■□□□ 1.77
SHROOM1-204ENST00000440118 RIPK4P57078 832 aa26.13■■□□□ 1.77
SHROOM1-204ENST00000440118 LMOD3Q0VAK6 560 aa26.13■■□□□ 1.77
SHROOM1-204ENST00000440118 TBC1D9BQ66K14 1250 aa26.13■■□□□ 1.77
SHROOM1-204ENST00000440118 CCDC146Q8IYE0 955 aa26.12■■□□□ 1.77
SHROOM1-204ENST00000440118 ZNF652Q9Y2D9 606 aa26.11■■□□□ 1.77
SHROOM1-204ENST00000440118 ZNF526Q8TF50 670 aaPredicted RBP26.1■■□□□ 1.77
SHROOM1-204ENST00000440118 SETDB2Q96T68 719 aa26.1■■□□□ 1.77
SHROOM1-204ENST00000440118 CAMTA2O94983 1202 aa26.09■■□□□ 1.77
SHROOM1-204ENST00000440118 KCNA3P22001 575 aa26.09■■□□□ 1.77
SHROOM1-204ENST00000440118 PRKRIP1Q9H875 184 aaPredicted RBP26.09■■□□□ 1.77
SHROOM1-204ENST00000440118 GPBP1L1Q9HC44 474 aaPredicted RBP26.09■■□□□ 1.77
SHROOM1-204ENST00000440118 TSPYL4Q9UJ04 414 aa26.09■■□□□ 1.77
SHROOM1-204ENST00000440118 ANKRD31Q8N7Z5 1873 aa26.08■■□□□ 1.77
SHROOM1-204ENST00000440118 ADCY9O60503 1353 aa26.08■■□□□ 1.77
SHROOM1-204ENST00000440118 TMPOP42166 694 aaKnown RBP26.08■■□□□ 1.77
SHROOM1-204ENST00000440118 NEUROD2Q15784 382 aa26.08■■□□□ 1.77
SHROOM1-204ENST00000440118 C2CD5Q86YS7 1000 aa26.08■■□□□ 1.77
SHROOM1-204ENST00000440118 RRP7AQ9Y3A4 280 aaKnown RBP26.08■■□□□ 1.77
SHROOM1-204ENST00000440118 CNBD1Q8NA66 436 aa26.07■■□□□ 1.76
SHROOM1-204ENST00000440118 H0YIN7 160 aa26.06■■□□□ 1.76
SHROOM1-204ENST00000440118 EIF4A1P60842 406 aaKnown RBP26.05■■□□□ 1.76
SHROOM1-204ENST00000440118 ST5P78524 1137 aa26.05■■□□□ 1.76
SHROOM1-204ENST00000440118 RUNDC1Q96C34 613 aa26.05■■□□□ 1.76
SHROOM1-204ENST00000440118 CACNA1SQ13698 1873 aa26.04■■□□□ 1.76
SHROOM1-204ENST00000440118 NBPF26B4DH59 902 aa26.04■■□□□ 1.76
SHROOM1-204ENST00000440118 NBPF10Q6P3W6 841 aaKnown RBP26.04■■□□□ 1.76
SHROOM1-204ENST00000440118 NGEFQ8N5V2 710 aa26.04■■□□□ 1.76
SHROOM1-204ENST00000440118 NBPF15Q8N660 670 aa26.04■■□□□ 1.76
SHROOM1-204ENST00000440118 COL11A2P13942 1736 aaPredicted RBP26.03■■□□□ 1.76
SHROOM1-204ENST00000440118 PDE6BP35913 854 aa26.03■■□□□ 1.76
SHROOM1-204ENST00000440118 PRR5LQ6MZQ0 368 aa26.03■■□□□ 1.76
SHROOM1-204ENST00000440118 CLEC4GQ6UXB4 293 aa26.02■■□□□ 1.76
SHROOM1-204ENST00000440118 NBPF5PQ86XG9 351 aaPredicted RBP26.02■■□□□ 1.76
SHROOM1-204ENST00000440118 CCDC24Q8N4L8 307 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms