RNA–Protein interactions for RNA: ENST00000438888.5

PRAME-208, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS ALT2 TSL 4

Gene PRAME, Length 566 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-208ENST00000438888 KCPQ6ZWJ8 1503 aa16.62■□□□□ 0.25
PRAME-208ENST00000438888 POLRMTO00411 1230 aaKnown RBP16.62■□□□□ 0.25
PRAME-208ENST00000438888 U2SURPO15042 1029 aaKnown RBP16.62■□□□□ 0.25
PRAME-208ENST00000438888 CYP19A1P11511 503 aaPredicted RBP16.62■□□□□ 0.25
PRAME-208ENST00000438888 DALRD3Q5D0E6 543 aaKnown RBP16.62■□□□□ 0.25
PRAME-208ENST00000438888 C9orf131Q5VYM1 1079 aa16.62■□□□□ 0.25
PRAME-208ENST00000438888 COL15A1P39059 1388 aa16.62■□□□□ 0.25
PRAME-208ENST00000438888 NMRK2Q9NPI5 230 aa16.61■□□□□ 0.25
PRAME-208ENST00000438888 ADAMTS7Q9UKP4 1686 aa16.6■□□□□ 0.25
PRAME-208ENST00000438888 TTC5Q8N0Z6 440 aa16.6■□□□□ 0.25
PRAME-208ENST00000438888 MYBBP1AQ9BQG0 1328 aaKnown RBP16.6■□□□□ 0.25
PRAME-208ENST00000438888 BRCA1P38398 1863 aaKnown RBP16.59■□□□□ 0.25
PRAME-208ENST00000438888 CANXP27824 592 aaKnown RBP16.59■□□□□ 0.25
PRAME-208ENST00000438888 TM4SF1P30408 202 aa16.59■□□□□ 0.25
PRAME-208ENST00000438888 NFIXQ14938 502 aa16.59■□□□□ 0.25
PRAME-208ENST00000438888 RNF181Q9P0P0 153 aa16.59■□□□□ 0.25
PRAME-208ENST00000438888 BICDL1Q6ZP65 573 aa16.58■□□□□ 0.24
PRAME-208ENST00000438888 NARFQ9UHQ1 456 aa16.58■□□□□ 0.24
PRAME-208ENST00000438888 COL3A1P02461 1466 aaPredicted RBP16.58■□□□□ 0.24
PRAME-208ENST00000438888 ZNF330Q9Y3S2 320 aaPredicted RBP16.57■□□□□ 0.24
PRAME-208ENST00000438888 CCER2I3L3R5 266 aa16.56■□□□□ 0.24
PRAME-208ENST00000438888 TOMM70O94826 608 aa16.56■□□□□ 0.24
PRAME-208ENST00000438888 PPP2R1AP30153 589 aa16.56■□□□□ 0.24
PRAME-208ENST00000438888 RASSF7Q02833 373 aa16.56■□□□□ 0.24
PRAME-208ENST00000438888 TEFQ10587 303 aa16.56■□□□□ 0.24
PRAME-208ENST00000438888 BCL2L12Q9HB09 334 aa16.56■□□□□ 0.24
PRAME-208ENST00000438888 VIRMAQ69YN4 1812 aaKnown RBP16.55■□□□□ 0.24
PRAME-208ENST00000438888 ARFGEF1Q9Y6D6 1849 aa16.55■□□□□ 0.24
PRAME-208ENST00000438888 SERPINB2P05120 415 aa16.55■□□□□ 0.24
PRAME-208ENST00000438888 C16orf71Q8IYS4 520 aaPredicted RBP16.55■□□□□ 0.24
PRAME-208ENST00000438888 VSIG10Q8N0Z9 540 aa16.55■□□□□ 0.24
PRAME-208ENST00000438888 GAS2L2Q8NHY3 880 aa16.55■□□□□ 0.24
PRAME-208ENST00000438888 ZNF496Q96IT1 587 aaPredicted RBP16.55■□□□□ 0.24
PRAME-208ENST00000438888 CARMIL3Q8ND23 1372 aa16.54■□□□□ 0.24
PRAME-208ENST00000438888 GNAT3A8MTJ3 354 aa16.54■□□□□ 0.24
PRAME-208ENST00000438888 STARD3NLO95772 234 aa16.54■□□□□ 0.24
PRAME-208ENST00000438888 APLP1P51693 650 aa16.53■□□□□ 0.24
PRAME-208ENST00000438888 C2CD5Q86YS7 1000 aa16.53■□□□□ 0.24
PRAME-208ENST00000438888 IL17REQ8NFR9 667 aa16.53■□□□□ 0.24
PRAME-208ENST00000438888 KDM2BQ8NHM5 1336 aa16.52■□□□□ 0.24
PRAME-208ENST00000438888 UBR2Q8IWV8 1755 aa16.52■□□□□ 0.24
PRAME-208ENST00000438888 ZNF790Q6PG37 636 aa16.52■□□□□ 0.24
PRAME-208ENST00000438888 HEG1Q9ULI3 1381 aa16.51■□□□□ 0.23
PRAME-208ENST00000438888 PRKAR2BP31323 418 aa16.51■□□□□ 0.23
PRAME-208ENST00000438888 EIF5P55010 431 aaKnown RBP16.51■□□□□ 0.23
PRAME-208ENST00000438888 CCDC24Q8N4L8 307 aa16.51■□□□□ 0.23
PRAME-208ENST00000438888 TBC1D2BQ9UPU7 963 aa16.51■□□□□ 0.23
PRAME-208ENST00000438888 AFDNP55196 1824 aaKnown RBP16.51■□□□□ 0.23
PRAME-208ENST00000438888 A0A087WZG4 1122 aa16.5■□□□□ 0.23
PRAME-208ENST00000438888 IFFO2Q5TF58 517 aa16.5■□□□□ 0.23
PRAME-208ENST00000438888 TBC1D9BQ66K14 1250 aa16.5■□□□□ 0.23
PRAME-208ENST00000438888 PHACTR3Q96KR7 559 aa16.5■□□□□ 0.23
PRAME-208ENST00000438888 CFAP53Q96M91 514 aa16.5■□□□□ 0.23
PRAME-208ENST00000438888 RRAGCQ9HB90 399 aa16.5■□□□□ 0.23
PRAME-208ENST00000438888 MRS2Q9HD23 443 aa16.5■□□□□ 0.23
PRAME-208ENST00000438888 H0YIN7 160 aa16.49■□□□□ 0.23
PRAME-208ENST00000438888 KCNQ3O43525 872 aa16.49■□□□□ 0.23
PRAME-208ENST00000438888 HTRA3P83110 453 aa16.49■□□□□ 0.23
PRAME-208ENST00000438888 TTLL6Q8N841 843 aa16.49■□□□□ 0.23
PRAME-208ENST00000438888 RBM46Q8TBY0 533 aaKnown RBP16.49■□□□□ 0.23
PRAME-208ENST00000438888 FMNL2Q96PY5 1086 aa16.49■□□□□ 0.23
PRAME-208ENST00000438888 NRXN2Q9P2S2 1712 aa16.49■□□□□ 0.23
PRAME-208ENST00000438888 ZNF219Q9P2Y4 722 aaPredicted RBP16.49■□□□□ 0.23
PRAME-208ENST00000438888 A1BGP04217 495 aa16.48■□□□□ 0.23
PRAME-208ENST00000438888 PIP4K2AP48426 406 aaPredicted RBP16.48■□□□□ 0.23
PRAME-208ENST00000438888 CCDC184Q52MB2 194 aa16.48■□□□□ 0.23
PRAME-208ENST00000438888 NPM2Q86SE8 214 aaKnown RBP16.48■□□□□ 0.23
PRAME-208ENST00000438888 ZNF622Q969S3 477 aaKnown RBP eCLIP16.48■□□□□ 0.23
PRAME-208ENST00000438888 RSPH6AQ9H0K4 717 aa16.48■□□□□ 0.23
PRAME-208ENST00000438888 BTBD11A6QL63 1104 aa16.47■□□□□ 0.23
PRAME-208ENST00000438888 NPHP1O15259 732 aa16.47■□□□□ 0.23
PRAME-208ENST00000438888 PRELPP51888 382 aa16.47■□□□□ 0.23
PRAME-208ENST00000438888 TEX13AQ9BXU3 409 aaPredicted RBP16.47■□□□□ 0.23
PRAME-208ENST00000438888 SCN7AQ01118 1682 aa16.46■□□□□ 0.23
PRAME-208ENST00000438888 U2AF1L5P0DN76 240 aaPredicted RBP16.46■□□□□ 0.23
PRAME-208ENST00000438888 LMNB1P20700 586 aa16.46■□□□□ 0.23
PRAME-208ENST00000438888 U2AF1Q01081 240 aaKnown RBP eCLIP16.46■□□□□ 0.23
PRAME-208ENST00000438888 CEMIPQ8WUJ3 1361 aa16.46■□□□□ 0.23
PRAME-208ENST00000438888 IL6STP40189 918 aaPredicted RBP16.45■□□□□ 0.22
PRAME-208ENST00000438888 PRR5LQ6MZQ0 368 aa16.45■□□□□ 0.22
PRAME-208ENST00000438888 MCM10Q7L590 875 aa16.45■□□□□ 0.22
PRAME-208ENST00000438888 NUDCQ9Y266 331 aa16.45■□□□□ 0.22
PRAME-208ENST00000438888 SIPA1L3O60292 1781 aaPredicted RBP16.45■□□□□ 0.22
PRAME-208ENST00000438888 DLEC1Q9Y238 1755 aa16.44■□□□□ 0.22
PRAME-208ENST00000438888 PRAMEF22A3QJZ6 481 aa16.44■□□□□ 0.22
PRAME-208ENST00000438888 NFKBIEO00221 500 aa16.44■□□□□ 0.22
PRAME-208ENST00000438888 FSTL1Q12841 308 aa16.44■□□□□ 0.22
PRAME-208ENST00000438888 DNAJC5GQ8N7S2 189 aa16.44■□□□□ 0.22
PRAME-208ENST00000438888 CNBD1Q8NA66 436 aa16.44■□□□□ 0.22
PRAME-208ENST00000438888 TNRC6CQ9HCJ0 1690 aaKnown RBP16.43■□□□□ 0.22
PRAME-208ENST00000438888 WDR90Q96KV7 1748 aa16.43■□□□□ 0.22
PRAME-208ENST00000438888 C21orf2O43822 256 aa16.43■□□□□ 0.22
PRAME-208ENST00000438888 CAMTA2O94983 1202 aa16.43■□□□□ 0.22
PRAME-208ENST00000438888 PDE6BP35913 854 aa16.43■□□□□ 0.22
PRAME-208ENST00000438888 DCTN1Q14203 1278 aa16.43■□□□□ 0.22
PRAME-208ENST00000438888 DZIP3Q86Y13 1208 aaKnown RBP16.43■□□□□ 0.22
PRAME-208ENST00000438888 RTF1Q92541 710 aaKnown RBP16.43■□□□□ 0.22
PRAME-208ENST00000438888 SETDB2Q96T68 719 aa16.43■□□□□ 0.22
PRAME-208ENST00000438888 BRIP1Q9BX63 1249 aa16.43■□□□□ 0.22
PRAME-208ENST00000438888 SBF1O95248 1867 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 126.6 ms