RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 IDI1Q13907 227 aa20.04■□□□□ 0.8
PTPRF-209ENST00000438120 TAF3Q5VWG9 929 aa20.04■□□□□ 0.8
PTPRF-209ENST00000438120 CTCFLQ8NI51 663 aaPredicted RBP20.04■□□□□ 0.8
PTPRF-209ENST00000438120 CAMSAP2Q08AD1 1489 aa20.03■□□□□ 0.8
PTPRF-209ENST00000438120 ANXA1P04083 346 aa20.03■□□□□ 0.8
PTPRF-209ENST00000438120 DBF4Q9UBU7 674 aaPredicted RBP20.03■□□□□ 0.8
PTPRF-209ENST00000438120 NKTRP30414 1462 aaKnown RBP20.03■□□□□ 0.8
PTPRF-209ENST00000438120 RPGRQ92834 1020 aaKnown RBP20.03■□□□□ 0.8
PTPRF-209ENST00000438120 MAGI1Q96QZ7 1491 aaPredicted RBP20.03■□□□□ 0.8
PTPRF-209ENST00000438120 GOLIM4O00461 696 aa20.03■□□□□ 0.8
PTPRF-209ENST00000438120 ERLIN1O75477 346 aa20.03■□□□□ 0.8
PTPRF-209ENST00000438120 IFIT3O14879 490 aaKnown RBP20.02■□□□□ 0.8
PTPRF-209ENST00000438120 SSFA2P28290 1259 aa20.02■□□□□ 0.8
PTPRF-209ENST00000438120 NGLY1Q96IV0 654 aa20.02■□□□□ 0.8
PTPRF-209ENST00000438120 SCLT1Q96NL6 688 aa20.02■□□□□ 0.8
PTPRF-209ENST00000438120 GOLGA8BA8MQT2 603 aa20.02■□□□□ 0.8
PTPRF-209ENST00000438120 WDR78Q5VTH9 848 aa20.02■□□□□ 0.8
PTPRF-209ENST00000438120 CKAP2LQ8IYA6 745 aa20.02■□□□□ 0.8
PTPRF-209ENST00000438120 HYPKQ9NX55 129 aa20.02■□□□□ 0.8
PTPRF-209ENST00000438120 GDPD2Q9HCC8 539 aa20.02■□□□□ 0.79
PTPRF-209ENST00000438120 TAF4BQ92750 862 aa20.01■□□□□ 0.79
PTPRF-209ENST00000438120 PLB1Q6P1J6 1458 aa20.01■□□□□ 0.79
PTPRF-209ENST00000438120 HAND2P61296 217 aa20.01■□□□□ 0.79
PTPRF-209ENST00000438120 GOLGA8AA7E2F4 631 aa20.01■□□□□ 0.79
PTPRF-209ENST00000438120 DNA2P51530 1060 aa20.01■□□□□ 0.79
PTPRF-209ENST00000438120 CHRNA2Q15822 529 aa20.01■□□□□ 0.79
PTPRF-209ENST00000438120 CCDC102AQ96A19 550 aa20.01■□□□□ 0.79
PTPRF-209ENST00000438120 IQCA1Q86XH1 822 aa20■□□□□ 0.79
PTPRF-209ENST00000438120 C6orf229H3BNL8 230 aa20■□□□□ 0.79
PTPRF-209ENST00000438120 NEBLO76041 1014 aa20■□□□□ 0.79
PTPRF-209ENST00000438120 TMX1Q9H3N1 280 aa20■□□□□ 0.79
PTPRF-209ENST00000438120 EXOC5O00471 708 aa20■□□□□ 0.79
PTPRF-209ENST00000438120 KRT28Q7Z3Y7 464 aa20■□□□□ 0.79
PTPRF-209ENST00000438120 CCDC66A2RUB6 948 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 ZNF397Q8NF99 534 aaPredicted RBP19.99■□□□□ 0.79
PTPRF-209ENST00000438120 NLRP5P59047 1200 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 MYCNP04198 464 aaPredicted RBP19.99■□□□□ 0.79
PTPRF-209ENST00000438120 SSRP1Q08945 709 aaKnown RBP19.99■□□□□ 0.79
PTPRF-209ENST00000438120 CPLX3Q8WVH0 158 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 VAT1LQ9HCJ6 419 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 ADGRL1O94910 1474 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 ESPNB1AK53 854 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 LIG1P18858 919 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 TNIP1Q15025 636 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 TFIP11Q9UBB9 837 aaKnown RBP19.99■□□□□ 0.79
PTPRF-209ENST00000438120 CCDC196A0A1B0GTZ2 297 aa19.99■□□□□ 0.79
PTPRF-209ENST00000438120 UBE3BQ7Z3V4 1068 aa19.98■□□□□ 0.79
PTPRF-209ENST00000438120 PANK2Q9BZ23 570 aa19.98■□□□□ 0.79
PTPRF-209ENST00000438120 MBIPQ9NS73 344 aa19.98■□□□□ 0.79
PTPRF-209ENST00000438120 HSP90AB3PQ58FF7 597 aa19.98■□□□□ 0.79
PTPRF-209ENST00000438120 LDHAL6AQ6ZMR3 332 aa19.98■□□□□ 0.79
PTPRF-209ENST00000438120 ABCC11Q96J66 1382 aa19.98■□□□□ 0.79
PTPRF-209ENST00000438120 KIAA0586Q9BVV6 1533 aa19.98■□□□□ 0.79
PTPRF-209ENST00000438120 ABCC5O15440 1437 aa19.97■□□□□ 0.79
PTPRF-209ENST00000438120 PPP1R12BO60237 982 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-209ENST00000438120 TTLL12Q14166 644 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-209ENST00000438120 LIMCH1Q9UPQ0 1083 aa19.97■□□□□ 0.79
PTPRF-209ENST00000438120 PI4KAP2A4QPH2 592 aa19.97■□□□□ 0.79
PTPRF-209ENST00000438120 PI4KAP1Q8N8J0 262 aa19.97■□□□□ 0.79
PTPRF-209ENST00000438120 SFPQP23246 707 aaKnown RBP eCLIP19.97■□□□□ 0.793e-6■■□□□ 13
PTPRF-209ENST00000438120 SH2B1Q9NRF2 756 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-209ENST00000438120 BIN1O00499 593 aa19.97■□□□□ 0.79
PTPRF-209ENST00000438120 EIF3JO75822 258 aaKnown RBP19.97■□□□□ 0.79
PTPRF-209ENST00000438120 SCAND2PQ9GZW5 306 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-209ENST00000438120 ZRSR2Q15696 482 aaKnown RBP19.96■□□□□ 0.79
PTPRF-209ENST00000438120 CCDC183Q5T5S1 534 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 IQCEQ6IPM2 695 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 CACNA2D4Q7Z3S7 1137 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 ANO10Q9NW15 660 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 NOS1P29475 1434 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 KIAA0754O94854 1291 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 PCF11O94913 1555 aaKnown RBP19.96■□□□□ 0.79
PTPRF-209ENST00000438120 CCDC194A0A1B0GVG4 234 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 ANKRD18AQ8IVF6 992 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 SPA17Q15506 151 aa19.96■□□□□ 0.79
PTPRF-209ENST00000438120 HMGB1P09429 215 aaKnown RBP19.95■□□□□ 0.78
PTPRF-209ENST00000438120 JAKMIP3Q5VZ66 844 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 PPP1R42Q7Z4L9 355 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 GJB2P29033 226 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 FKBP15Q5T1M5 1219 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 CNNM3Q8NE01 707 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 TBC1D2Q9BYX2 928 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 ISM2Q6H9L7 571 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 TSG101Q99816 390 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 CCDC148Q8NFR7 591 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 EVI5LQ96CN4 794 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 ECHDC1Q9NTX5 307 aa19.95■□□□□ 0.78
PTPRF-209ENST00000438120 UBXN4Q92575 508 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 TBC1D9Q6ZT07 1266 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 CATIPQ7Z7H3 387 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 CWC25Q9NXE8 425 aaPredicted RBP19.94■□□□□ 0.78
PTPRF-209ENST00000438120 DESP17661 470 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 ANKRD24Q8TF21 1146 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 TNPO1Q92973 898 aaKnown RBP19.94■□□□□ 0.78
PTPRF-209ENST00000438120 MICU3Q86XE3 530 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 IFNL2Q8IZJ0 200 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 FSIP1Q8NA03 581 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 CUL5Q93034 780 aa19.94■□□□□ 0.78
PTPRF-209ENST00000438120 PTPRCP08575 1304 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 TOP1P11387 765 aaKnown RBP19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms