RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 PDE3AQ14432 1141 aa29.39■■■□□ 2.3
CPSF4-204ENST00000436336 ATF7IPQ6VMQ6 1270 aa29.39■■■□□ 2.3
CPSF4-204ENST00000436336 DBF4Q9UBU7 674 aaPredicted RBP29.39■■■□□ 2.3
CPSF4-204ENST00000436336 TEX13AQ9BXU3 409 aaPredicted RBP29.38■■■□□ 2.29
CPSF4-204ENST00000436336 CHPF2Q9P2E5 772 aa29.38■■■□□ 2.29
CPSF4-204ENST00000436336 PALLDQ8WX93 1383 aa29.38■■■□□ 2.29
CPSF4-204ENST00000436336 MS4A1P11836 297 aa29.37■■■□□ 2.29
CPSF4-204ENST00000436336 PTPRCP08575 1304 aa29.37■■■□□ 2.29
CPSF4-204ENST00000436336 LY75O60449 1722 aa29.36■■■□□ 2.29
CPSF4-204ENST00000436336 C20orf194Q5TEA3 1177 aa29.36■■■□□ 2.29
CPSF4-204ENST00000436336 TRIM27P14373 513 aa29.35■■■□□ 2.29
CPSF4-204ENST00000436336 ERBB4Q15303 1308 aa29.35■■■□□ 2.29
CPSF4-204ENST00000436336 PTF1AQ7RTS3 328 aa29.34■■■□□ 2.29
CPSF4-204ENST00000436336 BCL11BQ9C0K0 894 aaPredicted RBP29.34■■■□□ 2.29
CPSF4-204ENST00000436336 DDX21Q9NR30 783 aaKnown RBP eCLIP29.34■■■□□ 2.29
CPSF4-204ENST00000436336 SLC4A9Q96Q91 983 aa29.34■■■□□ 2.29
CPSF4-204ENST00000436336 API5Q9BZZ5 524 aaKnown RBP29.34■■■□□ 2.29
CPSF4-204ENST00000436336 G2E3Q7L622 706 aa29.33■■■□□ 2.29
CPSF4-204ENST00000436336 DZIP1LQ8IYY4 767 aaKnown RBP29.33■■■□□ 2.29
CPSF4-204ENST00000436336 FLIIQ13045 1269 aa29.32■■■□□ 2.28
CPSF4-204ENST00000436336 HYPKQ9NX55 129 aa29.32■■■□□ 2.28
CPSF4-204ENST00000436336 TNNQ9UQP3 1299 aa29.32■■■□□ 2.28
CPSF4-204ENST00000436336 COL5A3P25940 1745 aaPredicted RBP29.32■■■□□ 2.28
CPSF4-204ENST00000436336 LOC102724428A0A0B4J2F2 783 aa29.31■■■□□ 2.28
CPSF4-204ENST00000436336 SIK1P57059 783 aa29.31■■■□□ 2.28
CPSF4-204ENST00000436336 PDIA6Q15084 440 aa29.31■■■□□ 2.28
CPSF4-204ENST00000436336 ERICH6BQ5W0A0 696 aa29.31■■■□□ 2.28
CPSF4-204ENST00000436336 DNAJC10Q8IXB1 793 aa29.31■■■□□ 2.28
CPSF4-204ENST00000436336 FTSJ3Q8IY81 847 aaKnown RBP29.31■■■□□ 2.28
CPSF4-204ENST00000436336 CLUAP1Q96AJ1 413 aa29.3■■■□□ 2.28
CPSF4-204ENST00000436336 STARD3NLO95772 234 aa29.29■■■□□ 2.28
CPSF4-204ENST00000436336 PANK1Q8TE04 598 aa29.29■■■□□ 2.28
CPSF4-204ENST00000436336 PHAXQ9H814 394 aaKnown RBP29.29■■■□□ 2.28
CPSF4-204ENST00000436336 ANXA1P04083 346 aa29.28■■■□□ 2.28
CPSF4-204ENST00000436336 PROSER3Q2NL68 480 aa29.28■■■□□ 2.28
CPSF4-204ENST00000436336 N4BP2Q86UW6 1770 aaPredicted RBP29.28■■■□□ 2.28
CPSF4-204ENST00000436336 RLBP1P12271 317 aa29.28■■■□□ 2.28
CPSF4-204ENST00000436336 ATP6V1AP38606 617 aa29.28■■■□□ 2.28
CPSF4-204ENST00000436336 CRBNQ96SW2 442 aa29.28■■■□□ 2.28
CPSF4-204ENST00000436336 FKBP5Q13451 457 aaPredicted RBP29.27■■■□□ 2.28
CPSF4-204ENST00000436336 ABCC4O15439 1325 aa29.27■■■□□ 2.28
CPSF4-204ENST00000436336 RREB1Q92766 1687 aa29.26■■■□□ 2.27
CPSF4-204ENST00000436336 TRIM37O94972 964 aa29.25■■■□□ 2.27
CPSF4-204ENST00000436336 CYP19A1P11511 503 aaPredicted RBP29.25■■■□□ 2.27
CPSF4-204ENST00000436336 TAF1LQ8IZX4 1826 aa29.25■■■□□ 2.27
CPSF4-204ENST00000436336 A1BGP04217 495 aa29.25■■■□□ 2.27
CPSF4-204ENST00000436336 MYL6BP14649 208 aa29.25■■■□□ 2.27
CPSF4-204ENST00000436336 LRP10Q7Z4F1 713 aa29.24■■■□□ 2.27
CPSF4-204ENST00000436336 EXOC6Q8TAG9 804 aa29.24■■■□□ 2.27
CPSF4-204ENST00000436336 NBPF26B4DH59 902 aa29.23■■■□□ 2.27
CPSF4-204ENST00000436336 NBPF14Q5TI25 921 aa29.23■■■□□ 2.27
CPSF4-204ENST00000436336 NBPF10Q6P3W6 841 aaKnown RBP29.23■■■□□ 2.27
CPSF4-204ENST00000436336 NBPF15Q8N660 670 aa29.23■■■□□ 2.27
CPSF4-204ENST00000436336 COG6Q9Y2V7 657 aa29.23■■■□□ 2.27
CPSF4-204ENST00000436336 TNS1Q9HBL0 1735 aaKnown RBP29.22■■■□□ 2.27
CPSF4-204ENST00000436336 PIP4K2AP48426 406 aaPredicted RBP29.22■■■□□ 2.27
CPSF4-204ENST00000436336 ITPK1Q13572 414 aa29.22■■■□□ 2.27
CPSF4-204ENST00000436336 MVPQ14764 893 aaKnown RBP29.22■■■□□ 2.27
CPSF4-204ENST00000436336 TMEM57Q8N5G2 664 aa29.22■■■□□ 2.27
CPSF4-204ENST00000436336 MYH14Q7Z406 1995 aaKnown RBP29.22■■■□□ 2.27
CPSF4-204ENST00000436336 PXDNLA1KZ92 1463 aa29.2■■■□□ 2.27
CPSF4-204ENST00000436336 EP400Q96L91 3159 aa29.2■■■□□ 2.27
CPSF4-204ENST00000436336 DDX58O95786 925 aaKnown RBP29.2■■■□□ 2.26
CPSF4-204ENST00000436336 ARFGEF2Q9Y6D5 1785 aa29.18■■■□□ 2.26
CPSF4-204ENST00000436336 COPS6Q7L5N1 327 aa29.18■■■□□ 2.26
CPSF4-204ENST00000436336 XAGE3Q8WTP9 111 aa29.18■■■□□ 2.26
CPSF4-204ENST00000436336 F6X3S4 739 aa29.17■■■□□ 2.26
CPSF4-204ENST00000436336 AIMP1Q12904 312 aaKnown RBP29.17■■■□□ 2.26
CPSF4-204ENST00000436336 INTS3Q68E01 1043 aaKnown RBP29.17■■■□□ 2.26
CPSF4-204ENST00000436336 ITPRIPQ8IWB1 547 aa29.17■■■□□ 2.26
CPSF4-204ENST00000436336 CCNL1Q9UK58 526 aaPredicted RBP29.17■■■□□ 2.26
CPSF4-204ENST00000436336 DDX19BQ9UMR2 479 aa29.17■■■□□ 2.26
CPSF4-204ENST00000436336 NUP188Q5SRE5 1749 aa29.17■■■□□ 2.26
CPSF4-204ENST00000436336 KSR2Q6VAB6 950 aa29.17■■■□□ 2.26
CPSF4-204ENST00000436336 ADCY9O60503 1353 aa29.16■■■□□ 2.26
CPSF4-204ENST00000436336 PI4KAP2A4QPH2 592 aa29.16■■■□□ 2.26
CPSF4-204ENST00000436336 PI4KAP1Q8N8J0 262 aa29.16■■■□□ 2.26
CPSF4-204ENST00000436336 CCDC87Q9NVE4 849 aa29.16■■■□□ 2.26
CPSF4-204ENST00000436336 ZBTB1Q9Y2K1 713 aa29.16■■■□□ 2.26
CPSF4-204ENST00000436336 RGPD3A6NKT7 1758 aaPredicted RBP29.16■■■□□ 2.26
CPSF4-204ENST00000436336 RGPD4Q7Z3J3 1758 aa29.16■■■□□ 2.26
CPSF4-204ENST00000436336 CRKLP46109 303 aaKnown RBP29.15■■■□□ 2.26
CPSF4-204ENST00000436336 CCT4P50991 539 aaKnown RBP29.14■■■□□ 2.26
CPSF4-204ENST00000436336 SLC4A10Q6U841 1118 aa29.14■■■□□ 2.26
CPSF4-204ENST00000436336 DNAAF4Q8WXU2 420 aa29.14■■■□□ 2.26
CPSF4-204ENST00000436336 IL6STP40189 918 aaPredicted RBP29.14■■■□□ 2.25
CPSF4-204ENST00000436336 INTS5Q6P9B9 1019 aaKnown RBP29.14■■■□□ 2.25
CPSF4-204ENST00000436336 LINC00116Q8NCU8 138 aa29.14■■■□□ 2.25
CPSF4-204ENST00000436336 AAMPQ13685 434 aa29.12■■■□□ 2.25
CPSF4-204ENST00000436336 ANKRD13DQ6ZTN6 518 aa29.12■■■□□ 2.25
CPSF4-204ENST00000436336 MAP3K2Q9Y2U5 619 aa29.12■■■□□ 2.25
CPSF4-204ENST00000436336 C4BP0C0L5 1744 aa29.12■■■□□ 2.25
CPSF4-204ENST00000436336 CNTNAP4Q9C0A0 1308 aa29.12■■■□□ 2.25
CPSF4-204ENST00000436336 PLSCR1O15162 318 aa29.11■■■□□ 2.25
CPSF4-204ENST00000436336 SLC27A3Q5K4L6 730 aa29.11■■■□□ 2.25
CPSF4-204ENST00000436336 RIC3Q7Z5B4 369 aa29.11■■■□□ 2.25
CPSF4-204ENST00000436336 CHMP4BQ9H444 224 aaKnown RBP29.11■■■□□ 2.25
CPSF4-204ENST00000436336 ATP10DQ9P241 1426 aa29.11■■■□□ 2.25
CPSF4-204ENST00000436336 KCNQ4P56696 695 aa29.11■■■□□ 2.25
CPSF4-204ENST00000436336 PPP4R2Q9NY27 417 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms