RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 TYRO3Q06418 890 aa13.77□□□□□ -0.21
HMGCS1-202ENST00000433297 TAF3Q5VWG9 929 aa13.77□□□□□ -0.21
HMGCS1-202ENST00000433297 NECAB1Q8N987 351 aa13.77□□□□□ -0.21
HMGCS1-202ENST00000433297 PTPRCP08575 1304 aa13.77□□□□□ -0.21
HMGCS1-202ENST00000433297 GLI2P10070 1586 aa13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 TNMDQ9H2S6 317 aa13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 TFIP11Q9UBB9 837 aaKnown RBP13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 EFCAB6Q5THR3 1501 aa13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 LIG1P18858 919 aa13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 PLCD3Q8N3E9 789 aa13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 DDX41Q9UJV9 622 aaKnown RBP13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 ADGRB3O60242 1522 aa13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 INO80Q9ULG1 1556 aaPredicted RBP13.76□□□□□ -0.21
HMGCS1-202ENST00000433297 DEPDC5O75140 1603 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 SLFN14P0C7P3 912 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 TRMT1Q9NXH9 659 aaKnown RBP13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 CCT4P50991 539 aaKnown RBP13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 CEP135Q66GS9 1140 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 ZSCAN25Q6NSZ9 544 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 COG3Q96JB2 828 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 CBX8Q9HC52 389 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 DACT1Q9NYF0 836 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 LRRFIP2Q9Y608 721 aaKnown RBP13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 MRVI1Q9Y6F6 885 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 VWDEQ8N2E2 1590 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 ZFYVE9O95405 1425 aa13.75□□□□□ -0.21
HMGCS1-202ENST00000433297 CLIP2Q9UDT6 1046 aa13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 TSPYL4Q9UJ04 414 aa13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 STAG3Q9UJ98 1225 aa13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 NAP1L2Q9ULW6 460 aaPredicted RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 YTHDC2Q9H6S0 1430 aaKnown RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 ZC3H13Q5T200 1668 aaKnown RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 GABPB1Q06547 395 aaPredicted RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 LARP1BQ659C4 914 aaKnown RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 JAKMIP1Q96N16 626 aaKnown RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 MTMR6Q9Y217 621 aa13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 CHL1O00533 1208 aa13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 SURF6O75683 361 aaKnown RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 KIF18AQ8NI77 898 aa13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 CACTINQ8WUQ7 758 aaKnown RBP13.74□□□□□ -0.21
HMGCS1-202ENST00000433297 TTC6Q86TZ1 520 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 KRT222Q8N1A0 295 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 STK31Q9BXU1 1019 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 ST7Q9NRC1 585 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 PAXBP1Q9Y5B6 917 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 NCKAP5LQ9HCH0 1330 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 IFT172Q9UG01 1749 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 CD163L1Q9NR16 1453 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 ARID5BQ14865 1188 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 TERF2Q15554 542 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 DNAJC25Q9H1X3 360 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 PDRG1Q9NUG6 133 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 ZNF215Q9UL58 517 aaPredicted RBP13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 NEURL4Q96JN8 1562 aa13.73□□□□□ -0.21
HMGCS1-202ENST00000433297 KRT85P78386 507 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 FILIP1Q7Z7B0 1213 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 CAMSAP1Q5T5Y3 1602 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 CCDC66A2RUB6 948 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 ZNF165P49910 485 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 PRPF40BQ6NWY9 871 aaKnown RBP13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 FBXW7Q969H0 707 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 FOXO3O43524 673 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 ZNF75DP51815 510 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 ATP8B2P98198 1209 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 KMT5BQ4FZB7 885 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 BICD2Q8TD16 824 aa13.72□□□□□ -0.21
HMGCS1-202ENST00000433297 ADCK5Q3MIX3 580 aa13.71□□□□□ -0.21
HMGCS1-202ENST00000433297 TCEANC2Q96MN5 208 aa13.71□□□□□ -0.21
HMGCS1-202ENST00000433297 TTC14Q96N46 770 aa13.71□□□□□ -0.21
HMGCS1-202ENST00000433297 SALL3Q9BXA9 1300 aa13.71□□□□□ -0.21
HMGCS1-202ENST00000433297 USP27XA6NNY8 438 aa13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 GNAI3P08754 354 aa13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 IRX5P78411 483 aaPredicted RBP13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 PTPN14Q15678 1187 aa13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 ELF2Q15723 593 aa13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 CCDC144BQ3MJ40 725 aa13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 CCDC144CPQ8IYA2 1237 aa13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 SYTL4Q96C24 671 aaPredicted RBP13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 MORC2Q9Y6X9 1032 aaPredicted RBP13.71□□□□□ -0.22
HMGCS1-202ENST00000433297 SGSM2O43147 1006 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 RAD50Q92878 1312 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 MROH1Q8NDA8 1641 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 ZCCHC11Q5TAX3 1644 aaKnown RBP13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 ABCC3O15438 1527 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 GOLGA6L19H0YKK7 550 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 CDC37L1Q7L3B6 337 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 SPATA32Q96LK8 384 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 HYPKQ9NX55 129 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 YEATS2Q9ULM3 1422 aa13.7□□□□□ -0.22
HMGCS1-202ENST00000433297 CEBPZQ03701 1054 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 STK3Q13188 491 aa13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 TIGD1Q96MW7 591 aa13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 OS9Q13438 667 aaPredicted RBP13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 CNTROBQ8N137 903 aa13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 UBTFL1P0CB47 393 aaPredicted RBP13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 ME3Q16798 604 aa13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 ZNF397Q8NF99 534 aaPredicted RBP13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 LSG1Q9H089 658 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 CYP46A1Q9Y6A2 500 aa13.69□□□□□ -0.22
HMGCS1-202ENST00000433297 FLIIQ13045 1269 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms