RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ESYT1Q9BSJ8 1104 aa17.46■□□□□ 0.39
LIG1-202ENST00000427526 STAP2Q9UGK3 403 aa17.46■□□□□ 0.39
LIG1-202ENST00000427526 N4BP2Q86UW6 1770 aaPredicted RBP17.46■□□□□ 0.39
LIG1-202ENST00000427526 CEMIPQ8WUJ3 1361 aa17.46■□□□□ 0.39
LIG1-202ENST00000427526 DCCP43146 1447 aa17.46■□□□□ 0.39
LIG1-202ENST00000427526 PHRF1Q9P1Y6 1649 aaKnown RBP17.45■□□□□ 0.38
LIG1-202ENST00000427526 USP44Q9H0E7 712 aa17.45■□□□□ 0.38
LIG1-202ENST00000427526 MED1Q15648 1581 aaPredicted RBP17.45■□□□□ 0.38
LIG1-202ENST00000427526 NPHP3Q7Z494 1330 aa17.45■□□□□ 0.38
LIG1-202ENST00000427526 PXDNLA1KZ92 1463 aa17.45■□□□□ 0.38
LIG1-202ENST00000427526 KCNQ3O43525 872 aa17.45■□□□□ 0.38
LIG1-202ENST00000427526 AKAP4Q5JQC9 854 aa17.45■□□□□ 0.38
LIG1-202ENST00000427526 ZNF445P59923 1031 aa17.44■□□□□ 0.38
LIG1-202ENST00000427526 ESPNB1AK53 854 aa17.44■□□□□ 0.38
LIG1-202ENST00000427526 LRRFIP2Q9Y608 721 aaKnown RBP17.44■□□□□ 0.38
LIG1-202ENST00000427526 ERBB3P21860 1342 aa17.44■□□□□ 0.38
LIG1-202ENST00000427526 ERBB4Q15303 1308 aa17.44■□□□□ 0.38
LIG1-202ENST00000427526 CHMLP26374 656 aa17.43■□□□□ 0.38
LIG1-202ENST00000427526 AMOTQ4VCS5 1084 aa17.43■□□□□ 0.38
LIG1-202ENST00000427526 IL17RAQ96F46 866 aa17.43■□□□□ 0.38
LIG1-202ENST00000427526 NEK4P51957 841 aa17.43■□□□□ 0.38
LIG1-202ENST00000427526 SRCIN1Q9C0H9 1055 aa17.43■□□□□ 0.38
LIG1-202ENST00000427526 CHRNA2Q15822 529 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 PPP1R9BQ96SB3 815 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 LMTK3Q96Q04 1460 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 ALS2Q96Q42 1657 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 TEFQ10587 303 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 C1orf141Q5JVX7 400 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 TMX3Q96JJ7 454 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 NLRP2Q9NX02 1062 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 ZNF335Q9H4Z2 1342 aaPredicted RBP17.42■□□□□ 0.38
LIG1-202ENST00000427526 PXDNQ92626 1479 aa17.42■□□□□ 0.38
LIG1-202ENST00000427526 MCM2P49736 904 aa17.41■□□□□ 0.38
LIG1-202ENST00000427526 ANAPC15P60006 121 aa17.41■□□□□ 0.38
LIG1-202ENST00000427526 EIF4A1P60842 406 aaKnown RBP17.41■□□□□ 0.38
LIG1-202ENST00000427526 NCAPD2Q15021 1401 aa17.41■□□□□ 0.38
LIG1-202ENST00000427526 RNMTO43148 476 aaKnown RBP17.41■□□□□ 0.38
LIG1-202ENST00000427526 NASPP49321 788 aaPredicted RBP17.41■□□□□ 0.38
LIG1-202ENST00000427526 HDGFL1Q5TGJ6 251 aa17.41■□□□□ 0.38
LIG1-202ENST00000427526 BRINP3Q76B58 766 aa17.41■□□□□ 0.38
LIG1-202ENST00000427526 SSH3Q8TE77 659 aa17.41■□□□□ 0.38
LIG1-202ENST00000427526 PALD1Q9ULE6 856 aa17.41■□□□□ 0.38
LIG1-202ENST00000427526 AOX1Q06278 1338 aa17.4■□□□□ 0.38
LIG1-202ENST00000427526 EIF2S2P20042 333 aaKnown RBP17.4■□□□□ 0.38
LIG1-202ENST00000427526 CUL4AQ13619 759 aa17.4■□□□□ 0.38
LIG1-202ENST00000427526 ZSCAN23Q3MJ62 389 aa17.4■□□□□ 0.38
LIG1-202ENST00000427526 SPATA31A3Q5VYP0 1347 aa17.4■□□□□ 0.38
LIG1-202ENST00000427526 BTBD11A6QL63 1104 aa17.4■□□□□ 0.38
LIG1-202ENST00000427526 UNC5CLQ8IV45 518 aa17.4■□□□□ 0.38
LIG1-202ENST00000427526 CCDC173Q0VFZ6 552 aa17.39■□□□□ 0.38
LIG1-202ENST00000427526 CAVIN1Q6NZI2 390 aaKnown RBP17.39■□□□□ 0.38
LIG1-202ENST00000427526 RILPL2Q969X0 211 aa17.39■□□□□ 0.38
LIG1-202ENST00000427526 TRIM44Q96DX7 344 aaPredicted RBP17.39■□□□□ 0.38
LIG1-202ENST00000427526 PHAXQ9H814 394 aaKnown RBP17.39■□□□□ 0.38
LIG1-202ENST00000427526 UBTFL1P0CB47 393 aaPredicted RBP17.39■□□□□ 0.37
LIG1-202ENST00000427526 GPT2Q8TD30 523 aa17.39■□□□□ 0.37
LIG1-202ENST00000427526 TRIM6-TRIM34B2RNG4 842 aa17.39■□□□□ 0.37
LIG1-202ENST00000427526 PRPF40AO75400 957 aaKnown RBP17.39■□□□□ 0.37
LIG1-202ENST00000427526 TNS3Q68CZ2 1445 aa17.39■□□□□ 0.37
LIG1-202ENST00000427526 MCCP23508 829 aa17.38■□□□□ 0.37
LIG1-202ENST00000427526 POLA2Q14181 598 aa17.38■□□□□ 0.37
LIG1-202ENST00000427526 RGPD5Q99666 1765 aa17.38■□□□□ 0.37
LIG1-202ENST00000427526 CSB-PGBD3P0DP91 1061 aa17.37■□□□□ 0.37
LIG1-202ENST00000427526 ANO2Q9NQ90 1003 aa17.37■□□□□ 0.37
LIG1-202ENST00000427526 EPB41L2O43491 1005 aaKnown RBP17.37■□□□□ 0.37
LIG1-202ENST00000427526 NCLP19338 710 aaKnown RBP17.37■□□□□ 0.37
LIG1-202ENST00000427526 INTS4Q96HW7 963 aaKnown RBP17.37■□□□□ 0.37
LIG1-202ENST00000427526 SLAIN2Q9P270 581 aa17.37■□□□□ 0.37
LIG1-202ENST00000427526 STRCQ7RTU9 1775 aa17.36■□□□□ 0.37
LIG1-202ENST00000427526 RAB11FIP3O75154 756 aa17.36■□□□□ 0.37
LIG1-202ENST00000427526 RAPGEF4Q8WZA2 1011 aa17.36■□□□□ 0.37
LIG1-202ENST00000427526 IL25Q9H293 177 aa17.36■□□□□ 0.37
LIG1-202ENST00000427526 BRD1O95696 1058 aa17.36■□□□□ 0.37
LIG1-202ENST00000427526 IL1RAPL2Q9NP60 686 aa17.36■□□□□ 0.37
LIG1-202ENST00000427526 PPP1R42Q7Z4L9 355 aa17.35■□□□□ 0.37
LIG1-202ENST00000427526 CHAMP1Q96JM3 812 aa17.35■□□□□ 0.37
LIG1-202ENST00000427526 ANXA1P04083 346 aa17.34■□□□□ 0.37
LIG1-202ENST00000427526 CHPF2Q9P2E5 772 aa17.34■□□□□ 0.37
LIG1-202ENST00000427526 XIRP1Q702N8 1843 aaKnown RBP17.34■□□□□ 0.37
LIG1-202ENST00000427526 PI4K2BQ8TCG2 481 aa17.34■□□□□ 0.37
LIG1-202ENST00000427526 HOXB7P09629 217 aa17.34■□□□□ 0.37
LIG1-202ENST00000427526 NUTM1Q86Y26 1132 aa17.34■□□□□ 0.37
LIG1-202ENST00000427526 RBSNQ9H1K0 784 aa17.34■□□□□ 0.37
LIG1-202ENST00000427526 LMO7Q8WWI1 1683 aa17.33■□□□□ 0.37
LIG1-202ENST00000427526 SURF6O75683 361 aaKnown RBP17.33■□□□□ 0.37
LIG1-202ENST00000427526 HSPA4P34932 840 aa17.33■□□□□ 0.37
LIG1-202ENST00000427526 PRIM1P49642 420 aaKnown RBP17.33■□□□□ 0.37
LIG1-202ENST00000427526 RHPN1Q8TCX5 695 aa17.33■□□□□ 0.37
LIG1-202ENST00000427526 PRAMEF22A3QJZ6 481 aa17.33■□□□□ 0.36
LIG1-202ENST00000427526 BEND3Q5T5X7 828 aa17.33■□□□□ 0.36
LIG1-202ENST00000427526 RBM27Q9P2N5 1060 aaKnown RBP17.33■□□□□ 0.36
LIG1-202ENST00000427526 NBPF7P0C2Y1 421 aaPredicted RBP17.32■□□□□ 0.36
LIG1-202ENST00000427526 TATP17735 454 aaPredicted RBP17.32■□□□□ 0.36
LIG1-202ENST00000427526 TMEM63CQ9P1W3 806 aa17.32■□□□□ 0.36
LIG1-202ENST00000427526 NSFL1CQ9UNZ2 370 aaKnown RBP17.32■□□□□ 0.36
LIG1-202ENST00000427526 ANP32BQ92688 251 aaKnown RBP17.32■□□□□ 0.36
LIG1-202ENST00000427526 CAMTA1Q9Y6Y1 1673 aa17.32■□□□□ 0.36
LIG1-202ENST00000427526 KDM3BQ7LBC6 1761 aa17.32■□□□□ 0.36
LIG1-202ENST00000427526 SRGAP3O43295 1099 aa17.31■□□□□ 0.36
LIG1-202ENST00000427526 KIF1BPQ96EK5 621 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms