RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LY75O60449 1722 aa12.89□□□□□ -0.35
CD44-207ENST00000425428 SLC4A2P04920 1241 aa12.89□□□□□ -0.35
CD44-207ENST00000425428 RARSP54136 660 aaKnown RBP12.89□□□□□ -0.35
CD44-207ENST00000425428 DNAJC10Q8IXB1 793 aa12.89□□□□□ -0.35
CD44-207ENST00000425428 NEFLP07196 543 aa12.88□□□□□ -0.35
CD44-207ENST00000425428 AK7Q96M32 723 aa12.88□□□□□ -0.35
CD44-207ENST00000425428 ARXQ96QS3 562 aa12.88□□□□□ -0.35
CD44-207ENST00000425428 DDX21Q9NR30 783 aaKnown RBP eCLIP12.88□□□□□ -0.35
CD44-207ENST00000425428 ZNF330Q9Y3S2 320 aaPredicted RBP12.88□□□□□ -0.35
CD44-207ENST00000425428 USP16Q9Y5T5 823 aa12.88□□□□□ -0.35
CD44-207ENST00000425428 RGPD3A6NKT7 1758 aaPredicted RBP12.88□□□□□ -0.35
CD44-207ENST00000425428 RGPD4Q7Z3J3 1758 aa12.88□□□□□ -0.35
CD44-207ENST00000425428 FRAT1Q92837 279 aaPredicted RBP12.87□□□□□ -0.35
CD44-207ENST00000425428 C5P01031 1676 aa12.87□□□□□ -0.35
CD44-207ENST00000425428 TNS1Q9HBL0 1735 aaKnown RBP12.87□□□□□ -0.35
CD44-207ENST00000425428 A0A087WZG4 1122 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 MYL6BP14649 208 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 TXNRD1Q16881 649 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 PTF1AQ7RTS3 328 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 SSH1Q8WYL5 1049 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 BCL2L13Q9BXK5 485 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 CCDC87Q9NVE4 849 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 CHPF2Q9P2E5 772 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 CYP19A1P11511 503 aaPredicted RBP12.86□□□□□ -0.35
CD44-207ENST00000425428 RC3H1Q5TC82 1133 aaKnown RBP12.86□□□□□ -0.35
CD44-207ENST00000425428 KIF6Q6ZMV9 814 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 FTSJ3Q8IY81 847 aaKnown RBP12.86□□□□□ -0.35
CD44-207ENST00000425428 PTPRCP08575 1304 aa12.86□□□□□ -0.35
CD44-207ENST00000425428 TCERG1O14776 1098 aaKnown RBP12.85□□□□□ -0.35
CD44-207ENST00000425428 CRKLP46109 303 aaKnown RBP12.85□□□□□ -0.35
CD44-207ENST00000425428 FKBP5Q13451 457 aaPredicted RBP12.85□□□□□ -0.35
CD44-207ENST00000425428 ZKSCAN2Q63HK3 967 aa12.85□□□□□ -0.35
CD44-207ENST00000425428 API5Q9BZZ5 524 aaKnown RBP12.85□□□□□ -0.35
CD44-207ENST00000425428 RTCBQ9Y3I0 505 aaKnown RBP12.85□□□□□ -0.35
CD44-207ENST00000425428 TAF1LQ8IZX4 1826 aa12.85□□□□□ -0.35
CD44-207ENST00000425428 CICQ96RK0 1608 aaPredicted RBP12.84□□□□□ -0.35
CD44-207ENST00000425428 PRAMEF22A3QJZ6 481 aa12.84□□□□□ -0.35
CD44-207ENST00000425428 IL6STP40189 918 aaPredicted RBP12.84□□□□□ -0.35
CD44-207ENST00000425428 NBPF14Q5TI25 921 aa12.84□□□□□ -0.35
CD44-207ENST00000425428 TJP1Q07157 1748 aa12.84□□□□□ -0.35
CD44-207ENST00000425428 CNTNAP4Q9C0A0 1308 aa12.84□□□□□ -0.35
CD44-207ENST00000425428 A1BGP04217 495 aa12.84□□□□□ -0.35
CD44-207ENST00000425428 BRPF1P55201 1214 aaPredicted RBP12.84□□□□□ -0.35
CD44-207ENST00000425428 EN1Q05925 392 aaPredicted RBP12.84□□□□□ -0.35
CD44-207ENST00000425428 MRPL50Q8N5N7 158 aaKnown RBP12.84□□□□□ -0.35
CD44-207ENST00000425428 SUPT16HQ9Y5B9 1047 aaKnown RBP12.84□□□□□ -0.35
CD44-207ENST00000425428 GNPATO15228 680 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 BCAR3O75815 825 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 NEXNQ0ZGT2 675 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 AIMP1Q12904 312 aaKnown RBP12.83□□□□□ -0.36
CD44-207ENST00000425428 FLIIQ13045 1269 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 ITPK1Q13572 414 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 RIC3Q7Z5B4 369 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 FLAD1Q8NFF5 587 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 ARHGAP45Q92619 1136 aa12.83□□□□□ -0.36
CD44-207ENST00000425428 CHMP4BQ9H444 224 aaKnown RBP12.83□□□□□ -0.36
CD44-207ENST00000425428 NOB1Q9ULX3 412 aaKnown RBP12.83□□□□□ -0.36
CD44-207ENST00000425428 COL5A3P25940 1745 aaPredicted RBP12.83□□□□□ -0.36
CD44-207ENST00000425428 LINC00116Q8NCU8 138 aa12.82□□□□□ -0.36
CD44-207ENST00000425428 SLC4A9Q96Q91 983 aa12.82□□□□□ -0.36
CD44-207ENST00000425428 STK32BQ9NY57 414 aa12.82□□□□□ -0.36
CD44-207ENST00000425428 TFCP2L1Q9NZI6 479 aa12.82□□□□□ -0.36
CD44-207ENST00000425428 EP400Q96L91 3159 aa12.82□□□□□ -0.36
CD44-207ENST00000425428 ZPR1O75312 459 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 ZNF652Q9Y2D9 606 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 C4BP0C0L5 1744 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 RPS6KA4O75676 772 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 ADRA2BP18089 450 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 RFC4P35249 363 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 RRP1P56182 461 aaKnown RBP12.81□□□□□ -0.36
CD44-207ENST00000425428 KCNQ4P56696 695 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 EZH2Q15910 746 aaKnown RBP12.81□□□□□ -0.36
CD44-207ENST00000425428 TRAPPC3LQ5T215 181 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 ATF7IPQ6VMQ6 1270 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 COPS6Q7L5N1 327 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 ZBTB1Q9Y2K1 713 aa12.81□□□□□ -0.36
CD44-207ENST00000425428 HSP90AB3PQ58FF7 597 aa12.8□□□□□ -0.36
CD44-207ENST00000425428 ANKRD13DQ6ZTN6 518 aa12.8□□□□□ -0.36
CD44-207ENST00000425428 DZIP3Q86Y13 1208 aaKnown RBP12.8□□□□□ -0.36
CD44-207ENST00000425428 XAGE3Q8WTP9 111 aa12.8□□□□□ -0.36
CD44-207ENST00000425428 CAMKK2Q96RR4 588 aa12.8□□□□□ -0.36
CD44-207ENST00000425428 ANXA1P04083 346 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 INTS5Q6P9B9 1019 aaKnown RBP12.79□□□□□ -0.36
CD44-207ENST00000425428 SLC4A10Q6U841 1118 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 KSR2Q6VAB6 950 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 DZIP1LQ8IYY4 767 aaKnown RBP12.79□□□□□ -0.36
CD44-207ENST00000425428 UPF1Q92900 1129 aaKnown RBP eCLIP12.79□□□□□ -0.36
CD44-207ENST00000425428 PHAXQ9H814 394 aaKnown RBP12.79□□□□□ -0.36
CD44-207ENST00000425428 MYH14Q7Z406 1995 aaKnown RBP12.79□□□□□ -0.36
CD44-207ENST00000425428 SSFA2P28290 1259 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 PIP4K2AP48426 406 aaPredicted RBP12.79□□□□□ -0.36
CD44-207ENST00000425428 PDE3AQ14432 1141 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 PDIA6Q15084 440 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 DEFB132Q7Z7B7 95 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 PLBD2Q8NHP8 589 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 LRRC4BQ9NT99 713 aa12.79□□□□□ -0.36
CD44-207ENST00000425428 COL15A1P39059 1388 aa12.78□□□□□ -0.36
CD44-207ENST00000425428 NBPF26B4DH59 902 aa12.78□□□□□ -0.36
CD44-207ENST00000425428 PHF14O94880 888 aa12.78□□□□□ -0.36
CD44-207ENST00000425428 CCT4P50991 539 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms