RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 LMO7Q8WWI1 1683 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 FAM208AQ9UK61 1670 aaKnown RBP13.17□□□□□ -0.3
CUX1-205ENST00000425244 KAT6BQ8WYB5 2073 aa13.16□□□□□ -0.3
CUX1-205ENST00000425244 SLC39A6Q13433 755 aa13.16□□□□□ -0.3
CUX1-205ENST00000425244 STK31Q9BXU1 1019 aa13.16□□□□□ -0.3
CUX1-205ENST00000425244 EIF2S2P20042 333 aaKnown RBP13.16□□□□□ -0.3
CUX1-205ENST00000425244 CEMIPQ8WUJ3 1361 aa13.15□□□□□ -0.3
CUX1-205ENST00000425244 K7ELQ4 463 aaPredicted RBP13.15□□□□□ -0.3
CUX1-205ENST00000425244 NGLY1Q96IV0 654 aa13.15□□□□□ -0.3
CUX1-205ENST00000425244 A0A0G2JS52 829 aa13.15□□□□□ -0.31
CUX1-205ENST00000425244 HSPA1LP34931 641 aa13.15□□□□□ -0.31
CUX1-205ENST00000425244 TNPO1Q92973 898 aaKnown RBP13.15□□□□□ -0.31
CUX1-205ENST00000425244 HMMRO75330 724 aa13.14□□□□□ -0.31
CUX1-205ENST00000425244 SDSP20132 328 aa13.14□□□□□ -0.31
CUX1-205ENST00000425244 FKBP5Q13451 457 aaPredicted RBP13.14□□□□□ -0.31
CUX1-205ENST00000425244 L1TD1Q5T7N2 865 aaKnown RBP13.14□□□□□ -0.31
CUX1-205ENST00000425244 DDX11L8A8MPP1 907 aa13.14□□□□□ -0.31
CUX1-205ENST00000425244 ABCC6O95255 1503 aa13.13□□□□□ -0.31
CUX1-205ENST00000425244 GOLGA6L3A6NEY3 463 aa13.13□□□□□ -0.31
CUX1-205ENST00000425244 DDIT3P35638 169 aa13.13□□□□□ -0.31
CUX1-205ENST00000425244 CCT4P50991 539 aaKnown RBP13.13□□□□□ -0.31
CUX1-205ENST00000425244 CASC1Q6TDU7 716 aa13.13□□□□□ -0.31
CUX1-205ENST00000425244 EXOC6BQ9Y2D4 811 aa13.13□□□□□ -0.31
CUX1-205ENST00000425244 PRAMEF22A3QJZ6 481 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 CABP4P57796 275 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 EP400Q96L91 3159 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.12□□□□□ -0.317e-7■■□□□ 13.1
CUX1-205ENST00000425244 OVOS2A0A0G2JMS6 1433 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 KDM6AO15550 1401 aaPredicted RBP13.12□□□□□ -0.31
CUX1-205ENST00000425244 PCDH11XQ9BZA7 1347 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 PCDH11YQ9BZA8 1340 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 FLIIQ13045 1269 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 TSHZ3Q63HK5 1081 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 SLC52A2Q9HAB3 445 aa13.12□□□□□ -0.31
CUX1-205ENST00000425244 COL22A1Q8NFW1 1626 aaPredicted RBP13.12□□□□□ -0.31
CUX1-205ENST00000425244 GNAI2P04899 355 aa13.11□□□□□ -0.31
CUX1-205ENST00000425244 EIF4A1P60842 406 aaKnown RBP13.11□□□□□ -0.31
CUX1-205ENST00000425244 HDGFL1Q5TGJ6 251 aa13.11□□□□□ -0.31
CUX1-205ENST00000425244 DCAF5Q96JK2 942 aa13.11□□□□□ -0.31
CUX1-205ENST00000425244 GBP4Q96PP9 640 aa13.11□□□□□ -0.31
CUX1-205ENST00000425244 COL14A1Q05707 1796 aaKnown RBP13.11□□□□□ -0.31
CUX1-205ENST00000425244 ANXA1P04083 346 aa13.11□□□□□ -0.31
CUX1-205ENST00000425244 CCDC30Q5VVM6 783 aa13.11□□□□□ -0.31
CUX1-205ENST00000425244 CIZ1Q9ULV3 898 aaPredicted RBP13.11□□□□□ -0.31
CUX1-205ENST00000425244 JCADQ9P266 1359 aa13.11□□□□□ -0.31
CUX1-205ENST00000425244 LRRC37A3O60309 1634 aa13.1□□□□□ -0.31
CUX1-205ENST00000425244 MEX3CQ5U5Q3 659 aaKnown RBP13.1□□□□□ -0.31
CUX1-205ENST00000425244 RAB3GAP1Q15042 981 aa13.1□□□□□ -0.31
CUX1-205ENST00000425244 RABEP1Q15276 862 aa13.1□□□□□ -0.31
CUX1-205ENST00000425244 SYTL4Q96C24 671 aaPredicted RBP13.1□□□□□ -0.31
CUX1-205ENST00000425244 USP26Q9BXU7 913 aa13.1□□□□□ -0.31
CUX1-205ENST00000425244 SSFA2P28290 1259 aa13.09□□□□□ -0.31
CUX1-205ENST00000425244 ZNF790Q6PG37 636 aa13.09□□□□□ -0.31
CUX1-205ENST00000425244 ZMYND15Q9H091 742 aa13.09□□□□□ -0.31
CUX1-205ENST00000425244 XRCC6P12956 609 aaKnown RBP eCLIP13.09□□□□□ -0.31
CUX1-205ENST00000425244 TTC5Q8N0Z6 440 aa13.09□□□□□ -0.31
CUX1-205ENST00000425244 EXOC5O00471 708 aa13.08□□□□□ -0.32
CUX1-205ENST00000425244 GLIPR1L2Q4G1C9 344 aa13.08□□□□□ -0.32
CUX1-205ENST00000425244 PANK2Q9BZ23 570 aa13.08□□□□□ -0.32
CUX1-205ENST00000425244 PLCH1Q4KWH8 1693 aa13.08□□□□□ -0.32
CUX1-205ENST00000425244 PDE1AP54750 535 aa13.08□□□□□ -0.32
CUX1-205ENST00000425244 PARP4Q9UKK3 1724 aaKnown RBP13.07□□□□□ -0.32
CUX1-205ENST00000425244 PNMA6EA0A0J9YXQ4 647 aa13.07□□□□□ -0.32
CUX1-205ENST00000425244 PTCD1O75127 700 aaKnown RBP13.07□□□□□ -0.32
CUX1-205ENST00000425244 FAM98CQ17RN3 349 aaKnown RBP13.07□□□□□ -0.32
CUX1-205ENST00000425244 CHPF2Q9P2E5 772 aa13.07□□□□□ -0.32
CUX1-205ENST00000425244 LRRFIP2Q9Y608 721 aaKnown RBP13.07□□□□□ -0.32
CUX1-205ENST00000425244 REC8O95072 547 aa13.07□□□□□ -0.32
CUX1-205ENST00000425244 GNAI3P08754 354 aa13.07□□□□□ -0.32
CUX1-205ENST00000425244 PIP4K2AP48426 406 aaPredicted RBP13.07□□□□□ -0.32
CUX1-205ENST00000425244 PHAXQ9H814 394 aaKnown RBP13.07□□□□□ -0.32
CUX1-205ENST00000425244 BABAM1Q9NWV8 329 aa13.07□□□□□ -0.32
CUX1-205ENST00000425244 SPATA31A1Q5TZJ5 1347 aa13.06□□□□□ -0.32
CUX1-205ENST00000425244 FSD2A1L4K1 749 aa13.06□□□□□ -0.32
CUX1-205ENST00000425244 ZNF496Q96IT1 587 aaPredicted RBP13.06□□□□□ -0.32
CUX1-205ENST00000425244 LRRCC1Q9C099 1032 aa13.06□□□□□ -0.32
CUX1-205ENST00000425244 PKD1L3Q7Z443 1732 aa13.06□□□□□ -0.32
CUX1-205ENST00000425244 ERC2O15083 957 aa13.06□□□□□ -0.32
CUX1-205ENST00000425244 GIGYF1O75420 1035 aaPredicted RBP13.06□□□□□ -0.32
CUX1-205ENST00000425244 SCN11AQ9UI33 1791 aa13.06□□□□□ -0.32
CUX1-205ENST00000425244 DDB1Q16531 1140 aa13.05□□□□□ -0.32
CUX1-205ENST00000425244 UNC5CLQ8IV45 518 aa13.05□□□□□ -0.32
CUX1-205ENST00000425244 USP21Q9UK80 565 aa13.05□□□□□ -0.32
CUX1-205ENST00000425244 TRIM6-TRIM34B2RNG4 842 aa13.05□□□□□ -0.32
CUX1-205ENST00000425244 RILPL2Q969X0 211 aa13.05□□□□□ -0.32
CUX1-205ENST00000425244 ST18O60284 1047 aa13.04□□□□□ -0.32
CUX1-205ENST00000425244 UBTFL1P0CB47 393 aaPredicted RBP13.04□□□□□ -0.32
CUX1-205ENST00000425244 MYL6BP14649 208 aa13.04□□□□□ -0.32
CUX1-205ENST00000425244 MX1P20591 662 aa13.04□□□□□ -0.32
CUX1-205ENST00000425244 ACSBG1Q96GR2 724 aa13.04□□□□□ -0.32
CUX1-205ENST00000425244 TMOD3Q9NYL9 352 aa13.04□□□□□ -0.32
CUX1-205ENST00000425244 LRP6O75581 1613 aa13.04□□□□□ -0.32
CUX1-205ENST00000425244 GOLGA6L22H0YM25 854 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 ATP8B2P98198 1209 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 AIMP1Q12904 312 aaKnown RBP13.03□□□□□ -0.32
CUX1-205ENST00000425244 PROSER3Q2NL68 480 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 IL1RAPL2Q9NP60 686 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 SPATA31A5Q5VU36 1347 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 SPATA31A7Q8IWB4 1347 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 KDM3BQ7LBC6 1761 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms