RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 NBPF1Q3BBV0 1214 aa11.32□□□□□ -0.6
LINC01040-201ENST00000425048 ARSJQ5FYB0 599 aaPredicted RBP11.32□□□□□ -0.6
LINC01040-201ENST00000425048 SLCO4C1Q6ZQN7 724 aa11.32□□□□□ -0.6
LINC01040-201ENST00000425048 COG6Q9Y2V7 657 aa11.32□□□□□ -0.6
LINC01040-201ENST00000425048 PCDHGA11Q9Y5H2 935 aa11.32□□□□□ -0.6
LINC01040-201ENST00000425048 A0A1W2PNR3 127 aa11.31□□□□□ -0.6
LINC01040-201ENST00000425048 ITGB2P05107 769 aa11.31□□□□□ -0.6
LINC01040-201ENST00000425048 EML3Q32P44 896 aa11.31□□□□□ -0.6
LINC01040-201ENST00000425048 ALYREFQ86V81 257 aaKnown RBP11.31□□□□□ -0.6
LINC01040-201ENST00000425048 PIK3CDO00329 1044 aa11.3□□□□□ -0.6
LINC01040-201ENST00000425048 ARAFP10398 606 aa11.3□□□□□ -0.6
LINC01040-201ENST00000425048 TATP17735 454 aaPredicted RBP11.3□□□□□ -0.6
LINC01040-201ENST00000425048 WWC1Q8IX03 1113 aa11.3□□□□□ -0.6
LINC01040-201ENST00000425048 CABP1Q9NZU7 370 aa11.3□□□□□ -0.6
LINC01040-201ENST00000425048 IQSEC3Q9UPP2 1182 aaPredicted RBP11.3□□□□□ -0.6
LINC01040-201ENST00000425048 NOD1Q9Y239 953 aa11.3□□□□□ -0.6
LINC01040-201ENST00000425048 BACH1O14867 736 aa11.29□□□□□ -0.6
LINC01040-201ENST00000425048 SKIP12755 728 aa11.29□□□□□ -0.6
LINC01040-201ENST00000425048 ZNF295-AS1Q8N0V1 137 aa11.29□□□□□ -0.6
LINC01040-201ENST00000425048 BTBD6Q96KE9 485 aa11.29□□□□□ -0.6
LINC01040-201ENST00000425048 ALG2Q9H553 416 aa11.29□□□□□ -0.6
LINC01040-201ENST00000425048 ZDHHC3Q9NYG2 299 aa11.29□□□□□ -0.6
LINC01040-201ENST00000425048 PIK3R2O00459 728 aa11.28□□□□□ -0.6
LINC01040-201ENST00000425048 LINC00114Q6XXX2 140 aa11.28□□□□□ -0.6
LINC01040-201ENST00000425048 MAPTP10636 758 aaKnown RBP11.27□□□□□ -0.61
LINC01040-201ENST00000425048 EPXP11678 715 aa11.27□□□□□ -0.61
LINC01040-201ENST00000425048 TNP2Q05952 138 aa11.27□□□□□ -0.61
LINC01040-201ENST00000425048 FAM182BQ5T319 152 aa11.27□□□□□ -0.61
LINC01040-201ENST00000425048 NFATC2IPQ8NCF5 419 aa11.27□□□□□ -0.61
LINC01040-201ENST00000425048 ZIC5Q96T25 663 aa11.27□□□□□ -0.61
LINC01040-201ENST00000425048 GJA3Q9Y6H8 435 aa11.27□□□□□ -0.61
LINC01040-201ENST00000425048 KRBA1A5PL33 1030 aa11.26□□□□□ -0.61
LINC01040-201ENST00000425048 NEURL1BA8MQ27 555 aa11.26□□□□□ -0.61
LINC01040-201ENST00000425048 KHNYNO15037 678 aaKnown RBP11.25□□□□□ -0.61
LINC01040-201ENST00000425048 PROCP04070 461 aa11.25□□□□□ -0.61
LINC01040-201ENST00000425048 HOXB4P17483 251 aaPredicted RBP11.25□□□□□ -0.61
LINC01040-201ENST00000425048 COL8A1P27658 744 aa11.25□□□□□ -0.61
LINC01040-201ENST00000425048 GTF2IP78347 998 aa11.25□□□□□ -0.61
LINC01040-201ENST00000425048 USP3Q9Y6I4 520 aa11.25□□□□□ -0.61
LINC01040-201ENST00000425048 DCDC2BA2VCK2 349 aa11.24□□□□□ -0.61
LINC01040-201ENST00000425048 PSME1Q06323 249 aa11.24□□□□□ -0.61
LINC01040-201ENST00000425048 AVENQ9NQS1 362 aaPredicted RBP11.24□□□□□ -0.61
LINC01040-201ENST00000425048 GNB5O14775 395 aa11.23□□□□□ -0.61
LINC01040-201ENST00000425048 ADH6P28332 368 aa11.23□□□□□ -0.61
LINC01040-201ENST00000425048 GRIN2CQ14957 1233 aa11.23□□□□□ -0.61
LINC01040-201ENST00000425048 BICDL1Q6ZP65 573 aa11.23□□□□□ -0.61
LINC01040-201ENST00000425048 PARP3Q9Y6F1 533 aa11.23□□□□□ -0.61
LINC01040-201ENST00000425048 RAD21O60216 631 aa11.22□□□□□ -0.61
LINC01040-201ENST00000425048 ADAM23O75077 832 aa11.22□□□□□ -0.61
LINC01040-201ENST00000425048 CD33P20138 364 aa11.22□□□□□ -0.61
LINC01040-201ENST00000425048 NCOA4Q13772 614 aa11.22□□□□□ -0.61
LINC01040-201ENST00000425048 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.22□□□□□ -0.61
LINC01040-201ENST00000425048 SUV39H2Q9H5I1 410 aa11.22□□□□□ -0.61
LINC01040-201ENST00000425048 SCHIP1Q9P0W5 487 aaPredicted RBP11.22□□□□□ -0.61
LINC01040-201ENST00000425048 FAM157BP0CG42 384 aa11.21□□□□□ -0.61
LINC01040-201ENST00000425048 ZNF358Q9NW07 568 aa11.21□□□□□ -0.61
LINC01040-201ENST00000425048 KLF15Q9UIH9 416 aa11.21□□□□□ -0.61
LINC01040-201ENST00000425048 HCN2Q9UL51 889 aa11.21□□□□□ -0.61
LINC01040-201ENST00000425048 PRR12Q9ULL5 1215 aa11.21□□□□□ -0.61
LINC01040-201ENST00000425048 SAMD5Q5TGI4 173 aa11.2□□□□□ -0.62
LINC01040-201ENST00000425048 L3MBTL2Q969R5 705 aa11.2□□□□□ -0.62
LINC01040-201ENST00000425048 MARK1Q9P0L2 795 aa11.2□□□□□ -0.62
LINC01040-201ENST00000425048 NOS2P35228 1153 aa11.19□□□□□ -0.62
LINC01040-201ENST00000425048 LAMC2Q13753 1193 aa11.19□□□□□ -0.62
LINC01040-201ENST00000425048 TEAD4Q15561 434 aa11.19□□□□□ -0.62
LINC01040-201ENST00000425048 CHSY3Q70JA7 882 aa11.19□□□□□ -0.62
LINC01040-201ENST00000425048 POM121Q96HA1 1249 aa11.19□□□□□ -0.62
LINC01040-201ENST00000425048 NOP53Q9NZM5 478 aaKnown RBP11.19□□□□□ -0.62
LINC01040-201ENST00000425048 PRKCSHP14314 528 aaPredicted RBP11.18□□□□□ -0.62
LINC01040-201ENST00000425048 TXLNAP40222 546 aa11.18□□□□□ -0.62
LINC01040-201ENST00000425048 DGKGP49619 791 aa11.18□□□□□ -0.62
LINC01040-201ENST00000425048 TRIM50Q86XT4 487 aa11.18□□□□□ -0.62
LINC01040-201ENST00000425048 DEPDC4Q8N2C3 294 aa11.18□□□□□ -0.62
LINC01040-201ENST00000425048 NEUROD4Q9HD90 331 aa11.18□□□□□ -0.62
LINC01040-201ENST00000425048 USP17L5A8MUK1 530 aa11.17□□□□□ -0.62
LINC01040-201ENST00000425048 BAG6P46379 1132 aa11.17□□□□□ -0.62
LINC01040-201ENST00000425048 ZNF468Q5VIY5 522 aaPredicted RBP11.17□□□□□ -0.62
LINC01040-201ENST00000425048 FCHSD1Q86WN1 690 aa11.17□□□□□ -0.62
LINC01040-201ENST00000425048 ZDHHC1Q8WTX9 485 aa11.17□□□□□ -0.62
LINC01040-201ENST00000425048 PCBP4P57723 403 aaKnown RBP11.16□□□□□ -0.62
LINC01040-201ENST00000425048 TNS4Q8IZW8 715 aa11.16□□□□□ -0.62
LINC01040-201ENST00000425048 ZNF232Q9UNY5 417 aa11.16□□□□□ -0.62
LINC01040-201ENST00000425048 EFSO43281 561 aa11.15□□□□□ -0.62
LINC01040-201ENST00000425048 EPHA4P54764 986 aa11.15□□□□□ -0.62
LINC01040-201ENST00000425048 FLIIQ13045 1269 aa11.15□□□□□ -0.62
LINC01040-201ENST00000425048 SLC9A9Q8IVB4 645 aa11.15□□□□□ -0.62
LINC01040-201ENST00000425048 STRN4Q9NRL3 753 aa11.15□□□□□ -0.62
LINC01040-201ENST00000425048 EML1O00423 815 aa11.14□□□□□ -0.63
LINC01040-201ENST00000425048 LRRC69Q6ZNQ3 347 aa11.14□□□□□ -0.63
LINC01040-201ENST00000425048 GPC6Q9Y625 555 aaPredicted RBP11.14□□□□□ -0.63
LINC01040-201ENST00000425048 SERTM1A2A2V5 107 aa11.13□□□□□ -0.63
LINC01040-201ENST00000425048 K7ELQ4 463 aaPredicted RBP11.13□□□□□ -0.63
LINC01040-201ENST00000425048 ZBTB7BO15156 539 aaPredicted RBP11.13□□□□□ -0.63
LINC01040-201ENST00000425048 UBTFP17480 764 aaKnown RBP11.13□□□□□ -0.63
LINC01040-201ENST00000425048 ATP1A2P50993 1020 aa11.13□□□□□ -0.63
LINC01040-201ENST00000425048 C1QTNF9BB2RNN3 333 aa11.12□□□□□ -0.63
LINC01040-201ENST00000425048 ALAS2P22557 587 aa11.12□□□□□ -0.63
LINC01040-201ENST00000425048 TBCELQ5QJ74 424 aa11.12□□□□□ -0.63
LINC01040-201ENST00000425048 HDGFL1Q5TGJ6 251 aa11.12□□□□□ -0.63
LINC01040-201ENST00000425048 CCDC102BQ68D86 513 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms