RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 POTEGQ6S5H5 508 aa7.64□□□□□ -1.19
HMGB3-202ENST00000419110 NUTM2AQ8IVF1 878 aaPredicted RBP7.64□□□□□ -1.19
HMGB3-202ENST00000419110 FTSJ3Q8IY81 847 aaKnown RBP7.64□□□□□ -1.19
HMGB3-202ENST00000419110 IFNL2Q8IZJ0 200 aa7.64□□□□□ -1.19
HMGB3-202ENST00000419110 FAM163AQ96GL9 167 aaPredicted RBP7.64□□□□□ -1.19
HMGB3-202ENST00000419110 BTAF1O14981 1849 aa7.64□□□□□ -1.19
HMGB3-202ENST00000419110 COL5A3P25940 1745 aaPredicted RBP7.64□□□□□ -1.19
HMGB3-202ENST00000419110 ZNF831Q5JPB2 1677 aa7.63□□□□□ -1.19
HMGB3-202ENST00000419110 KCPQ6ZWJ8 1503 aa7.63□□□□□ -1.19
HMGB3-202ENST00000419110 CHL1O00533 1208 aa7.63□□□□□ -1.19
HMGB3-202ENST00000419110 RNMTO43148 476 aaKnown RBP7.63□□□□□ -1.19
HMGB3-202ENST00000419110 PHKG2P15735 406 aa7.63□□□□□ -1.19
HMGB3-202ENST00000419110 IRX5P78411 483 aaPredicted RBP7.63□□□□□ -1.19
HMGB3-202ENST00000419110 CDCA7Q9BWT1 371 aaPredicted RBP7.63□□□□□ -1.19
HMGB3-202ENST00000419110 BCL2L13Q9BXK5 485 aa7.63□□□□□ -1.19
HMGB3-202ENST00000419110 CHMP4AQ9BY43 222 aa7.63□□□□□ -1.19
HMGB3-202ENST00000419110 PPP4R2Q9NY27 417 aa7.63□□□□□ -1.19
HMGB3-202ENST00000419110 BRWD3Q6RI45 1802 aa7.62□□□□□ -1.19
HMGB3-202ENST00000419110 BCAR3O75815 825 aa7.62□□□□□ -1.19
HMGB3-202ENST00000419110 HOXB7P09629 217 aa7.62□□□□□ -1.19
HMGB3-202ENST00000419110 CHRM1P11229 460 aaPredicted RBP7.62□□□□□ -1.19
HMGB3-202ENST00000419110 PDE3AQ14432 1141 aa7.62□□□□□ -1.19
HMGB3-202ENST00000419110 TAF7Q15545 349 aaPredicted RBP7.62□□□□□ -1.19
HMGB3-202ENST00000419110 MEX3CQ5U5Q3 659 aaKnown RBP7.62□□□□□ -1.19
HMGB3-202ENST00000419110 ZKSCAN2Q63HK3 967 aa7.62□□□□□ -1.19
HMGB3-202ENST00000419110 MPRIPQ6WCQ1 1025 aa7.62□□□□□ -1.19
HMGB3-202ENST00000419110 ZNF467Q7Z7K2 595 aaPredicted RBP7.62□□□□□ -1.19
HMGB3-202ENST00000419110 IFNLR1Q8IU57 520 aaPredicted RBP7.62□□□□□ -1.19
HMGB3-202ENST00000419110 ZCRB1Q8TBF4 217 aaKnown RBP7.62□□□□□ -1.19
HMGB3-202ENST00000419110 FRAT1Q92837 279 aaPredicted RBP7.62□□□□□ -1.19
HMGB3-202ENST00000419110 DCAF5Q96JK2 942 aa7.62□□□□□ -1.19
HMGB3-202ENST00000419110 RREB1Q92766 1687 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 IPO8O15397 1037 aaKnown RBP7.61□□□□□ -1.19
HMGB3-202ENST00000419110 PLIN1O60240 522 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 IL17REQ8NFR9 667 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 SSH1Q8WYL5 1049 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 C8orf37Q96NL8 207 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 CRBNQ96SW2 442 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 STK31Q9BXU1 1019 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 OCEL1Q9H607 264 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 PLSCR2Q9NRY7 297 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 USP35Q9P2H5 1018 aa7.61□□□□□ -1.19
HMGB3-202ENST00000419110 THRAP3Q9Y2W1 955 aaKnown RBP7.61□□□□□ -1.19
HMGB3-202ENST00000419110 CCDC9Q9Y3X0 531 aaKnown RBP7.61□□□□□ -1.19
HMGB3-202ENST00000419110 SPATA31A1Q5TZJ5 1347 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 SPATA31A5Q5VU36 1347 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 SPATA31A7Q8IWB4 1347 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 BTBD11A6QL63 1104 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 CYP27B1O15528 508 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 BRPF1P55201 1214 aaPredicted RBP7.6□□□□□ -1.19
HMGB3-202ENST00000419110 ATF7IPQ6VMQ6 1270 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 TTC5Q8N0Z6 440 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 SPOCK2Q92563 424 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 CCDC136Q96JN2 1154 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 SLC52A2Q9HAB3 445 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 BCORQ6W2J9 1755 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 LY75O60449 1722 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 BCL9LQ86UU0 1499 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 RGS12O14924 1447 aa7.6□□□□□ -1.19
HMGB3-202ENST00000419110 TAF1LQ8IZX4 1826 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 PTPRCP08575 1304 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 HSPA1LP34931 641 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 CABP4P57796 275 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 AAMPQ13685 434 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 LCE2DQ5TA82 110 aaPredicted RBP7.59□□□□□ -1.19
HMGB3-202ENST00000419110 HDGFL1Q5TGJ6 251 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 CCDC30Q5VVM6 783 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 UNC5CLQ8IV45 518 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 DZIP1LQ8IYY4 767 aaKnown RBP7.59□□□□□ -1.19
HMGB3-202ENST00000419110 TSPYL6Q8N831 410 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 C8orf58Q8NAV2 365 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 EXOC6Q8TAG9 804 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 API5Q9BZZ5 524 aaKnown RBP7.59□□□□□ -1.19
HMGB3-202ENST00000419110 SCN7AQ01118 1682 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 ATRNO75882 1429 aa7.59□□□□□ -1.19
HMGB3-202ENST00000419110 MYH3P11055 1940 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 ABCC4O15439 1325 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 ELL2O00472 640 aaPredicted RBP7.58□□□□□ -1.2
HMGB3-202ENST00000419110 VAMP4O75379 141 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 TRIM27P14373 513 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 VPS72Q15906 364 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 KRT24Q2M2I5 525 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 C20orf194Q5TEA3 1177 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 ITPRIPQ8IWB1 547 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 MRPL50Q8N5N7 158 aaKnown RBP7.58□□□□□ -1.2
HMGB3-202ENST00000419110 SLAIN1Q8ND83 568 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 NGLY1Q96IV0 654 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 CHMP4BQ9H444 224 aaKnown RBP7.58□□□□□ -1.2
HMGB3-202ENST00000419110 LGR6Q9HBX8 967 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 DDX19BQ9UMR2 479 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 RGPD3A6NKT7 1758 aaPredicted RBP7.58□□□□□ -1.2
HMGB3-202ENST00000419110 LAMB2P55268 1798 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 RGPD4Q7Z3J3 1758 aa7.58□□□□□ -1.2
HMGB3-202ENST00000419110 ERVV-2B6SEH9 535 aa7.57□□□□□ -1.2
HMGB3-202ENST00000419110 EIF4A1P60842 406 aaKnown RBP7.57□□□□□ -1.2
HMGB3-202ENST00000419110 MVPQ14764 893 aaKnown RBP7.57□□□□□ -1.2
HMGB3-202ENST00000419110 NKX1-1Q15270 411 aaPredicted RBP7.57□□□□□ -1.2
HMGB3-202ENST00000419110 DDB1Q16531 1140 aa7.57□□□□□ -1.2
HMGB3-202ENST00000419110 BARGINQ6ZT62 677 aa7.57□□□□□ -1.2
HMGB3-202ENST00000419110 PANK1Q8TE04 598 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms