RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 KIF1BPQ96EK5 621 aa9.57□□□□□ -0.88
HMGXB4-202ENST00000418170 PHACTR3Q96KR7 559 aa9.57□□□□□ -0.88
HMGXB4-202ENST00000418170 MSH6P52701 1360 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 TPD52L1Q16890 204 aaPredicted RBP9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 FBXO38Q6PIJ6 1188 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 CHMLP26374 656 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 CYP2C19P33261 490 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 ZNF215Q9UL58 517 aaPredicted RBP9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 SALL3Q9BXA9 1300 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 TOPAZ1Q8N9V7 1692 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 MARF1Q9Y4F3 1742 aaKnown RBP9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 EPB41L2O43491 1005 aaKnown RBP9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 PLA2G4DQ86XP0 818 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 NRBP1Q9UHY1 535 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 MRVI1Q9Y6F6 885 aa9.56□□□□□ -0.88
HMGXB4-202ENST00000418170 KIF20BQ96Q89 1820 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 NPM1P06748 294 aaKnown RBP eCLIP9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 LUZP1Q86V48 1076 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 KIAA0232Q92628 1395 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 HMMRO75330 724 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 MAPK8IP2Q13387 824 aaPredicted RBP9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 DRC7Q8IY82 874 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 ERO1AQ96HE7 468 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 ZNF75DP51815 510 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 TYRO3Q06418 890 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 CCDC171Q6TFL3 1326 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 TRIM6-TRIM34B2RNG4 842 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 MEIS3Q99687 375 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 TRIM34Q9BYJ4 488 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 ST7Q9NRC1 585 aa9.55□□□□□ -0.88
HMGXB4-202ENST00000418170 HSPA4P34932 840 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 AKAP12Q02952 1782 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 MAP3K11Q16584 847 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 KRT24Q2M2I5 525 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 CACTINQ8WUQ7 758 aaKnown RBP9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 CPSF1Q10570 1443 aaKnown RBP9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 DNM1Q05193 864 aaKnown RBP9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 NYAP1Q6ZVC0 841 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 ZNF592Q92610 1267 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 NOL10Q9BSC4 688 aaKnown RBP9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 ZNF446Q9NWS9 450 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 FEZ2Q9UHY8 353 aaPredicted RBP9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 NRKQ7Z2Y5 1582 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 HNRNPH2P55795 449 aaKnown RBP9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 ELF2Q15723 593 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 TRIM5Q9C035 493 aa9.54□□□□□ -0.88
HMGXB4-202ENST00000418170 RIMS2Q9UQ26 1411 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 TTC14Q96N46 770 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 CBX8Q9HC52 389 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 TERF2IPQ9NYB0 399 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 ERBB3P21860 1342 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 RAD50Q92878 1312 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 TSHZ3Q63HK5 1081 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 NUP62CLQ9H1M0 184 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 SMC3Q9UQE7 1217 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 LMOD3Q0VAK6 560 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 TDRD7Q8NHU6 1098 aaKnown RBP9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 V9GYY5 206 aaPredicted RBP9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 ADAMTSL3P82987 1691 aa9.53□□□□□ -0.88
HMGXB4-202ENST00000418170 HMOX1P09601 288 aa9.52□□□□□ -0.88
HMGXB4-202ENST00000418170 IDI1Q13907 227 aa9.52□□□□□ -0.88
HMGXB4-202ENST00000418170 BMS1Q14692 1282 aaKnown RBP9.52□□□□□ -0.88
HMGXB4-202ENST00000418170 RNF20Q5VTR2 975 aa9.52□□□□□ -0.88
HMGXB4-202ENST00000418170 RTF1Q92541 710 aaKnown RBP9.52□□□□□ -0.88
HMGXB4-202ENST00000418170 LIMCH1Q9UPQ0 1083 aa9.52□□□□□ -0.88
HMGXB4-202ENST00000418170 MON2Q7Z3U7 1717 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 CDK12Q9NYV4 1490 aaPredicted RBP9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 CHGAP10645 457 aaKnown RBP9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 CDC25BP30305 580 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 IRX3P78415 501 aaPredicted RBP9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 RAD51AP2Q09MP3 1159 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 PTPN14Q15678 1187 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 ANO6Q4KMQ2 910 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 CLIP2Q9UDT6 1046 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 MTMR6Q9Y217 621 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 PTPRCP08575 1304 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 H2AFXP16104 143 aaPredicted RBP9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 FBXO31Q5XUX0 539 aaPredicted RBP9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 RILPL2Q969X0 211 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 ZNF142P52746 1687 aaPredicted RBP9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 RPGRIP1LQ68CZ1 1315 aa9.52□□□□□ -0.89
HMGXB4-202ENST00000418170 SLU7O95391 586 aaKnown RBP9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 AK2P54819 239 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 CCDC144BQ3MJ40 725 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 RUFY3Q7L099 469 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 CCDC144CPQ8IYA2 1237 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 MAP2P11137 1827 aaKnown RBP9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 NEMFO60524 1076 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 HAP1P54257 671 aaPredicted RBP9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 LRRC8AQ8IWT6 810 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 RGPD8O14715 1765 aaPredicted RBP9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 USP27XA6NNY8 438 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 SRPK2P78362 688 aaKnown RBP9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 CHMP4AQ9BY43 222 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 ELP1O95163 1332 aa9.51□□□□□ -0.89
HMGXB4-202ENST00000418170 RBM43Q6ZSC3 357 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms