RNA–Protein interactions for RNA: ENST00000417496.6

HDAC9-208, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-208ENST00000417496 BRD1O95696 1058 aa17.6■□□□□ 0.41
HDAC9-208ENST00000417496 LRRC59Q96AG4 307 aaKnown RBP17.6■□□□□ 0.41
HDAC9-208ENST00000417496 CUL4AQ13619 759 aa17.6■□□□□ 0.41
HDAC9-208ENST00000417496 EIF4A1P60842 406 aaKnown RBP17.59■□□□□ 0.41
HDAC9-208ENST00000417496 PI4K2BQ8TCG2 481 aa17.59■□□□□ 0.41
HDAC9-208ENST00000417496 PRKCSHP14314 528 aaPredicted RBP17.59■□□□□ 0.41
HDAC9-208ENST00000417496 MPRIPQ6WCQ1 1025 aa17.59■□□□□ 0.41
HDAC9-208ENST00000417496 RNF214Q8ND24 703 aa17.59■□□□□ 0.41
HDAC9-208ENST00000417496 MCM2P49736 904 aa17.58■□□□□ 0.41
HDAC9-208ENST00000417496 XRN1Q8IZH2 1706 aaKnown RBP17.58■□□□□ 0.4
HDAC9-208ENST00000417496 ANAPC15P60006 121 aa17.58■□□□□ 0.4
HDAC9-208ENST00000417496 POLA2Q14181 598 aa17.57■□□□□ 0.4
HDAC9-208ENST00000417496 BEND3Q5T5X7 828 aa17.57■□□□□ 0.4
HDAC9-208ENST00000417496 CWC27Q6UX04 472 aaKnown RBP17.57■□□□□ 0.4
HDAC9-208ENST00000417496 SPG7Q9UQ90 795 aa17.57■□□□□ 0.4
HDAC9-208ENST00000417496 CPA1P15085 419 aa17.57■□□□□ 0.4
HDAC9-208ENST00000417496 HSPA4P34932 840 aa17.57■□□□□ 0.4
HDAC9-208ENST00000417496 SETD1BQ9UPS6 1966 aaKnown RBP17.57■□□□□ 0.4
HDAC9-208ENST00000417496 ZSCAN30Q86W11 494 aa17.56■□□□□ 0.4
HDAC9-208ENST00000417496 RASEFQ8IZ41 740 aa17.56■□□□□ 0.4
HDAC9-208ENST00000417496 DNAAF4Q8WXU2 420 aa17.56■□□□□ 0.4
HDAC9-208ENST00000417496 FAM208AQ9UK61 1670 aaKnown RBP17.56■□□□□ 0.4
HDAC9-208ENST00000417496 GADD45BO75293 160 aaPredicted RBP17.56■□□□□ 0.4
HDAC9-208ENST00000417496 XPCQ01831 940 aaPredicted RBP17.56■□□□□ 0.4
HDAC9-208ENST00000417496 PHF8Q9UPP1 1060 aa17.56■□□□□ 0.4
HDAC9-208ENST00000417496 ARHGAP23Q9P227 1491 aa17.55■□□□□ 0.4
HDAC9-208ENST00000417496 PRAMEF22A3QJZ6 481 aa17.55■□□□□ 0.4
HDAC9-208ENST00000417496 BTBD11A6QL63 1104 aa17.55■□□□□ 0.4
HDAC9-208ENST00000417496 RAB11FIP3O75154 756 aa17.55■□□□□ 0.4
HDAC9-208ENST00000417496 LRSAM1Q6UWE0 723 aa17.55■□□□□ 0.4
HDAC9-208ENST00000417496 IP6K1Q92551 441 aa17.55■□□□□ 0.4
HDAC9-208ENST00000417496 INTS4Q96HW7 963 aaKnown RBP17.55■□□□□ 0.4
HDAC9-208ENST00000417496 LRRC37A3O60309 1634 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 SGSM2O43147 1006 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 OS9Q13438 667 aaPredicted RBP17.54■□□□□ 0.4
HDAC9-208ENST00000417496 KIF1BPQ96EK5 621 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 BABAM1Q9NWV8 329 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 SLIT1O75093 1534 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 CEMIPQ8WUJ3 1361 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 TEFQ10587 303 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 PROSER3Q2NL68 480 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 ESCO1Q5FWF5 840 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 PA2G4Q9UQ80 394 aaKnown RBP17.54■□□□□ 0.4
HDAC9-208ENST00000417496 SNX14Q9Y5W7 946 aa17.54■□□□□ 0.4
HDAC9-208ENST00000417496 ZNF530Q6P9A1 599 aaPredicted RBP17.53■□□□□ 0.4
HDAC9-208ENST00000417496 PSME1Q06323 249 aa17.53■□□□□ 0.4
HDAC9-208ENST00000417496 DDX54Q8TDD1 881 aaKnown RBP17.53■□□□□ 0.4
HDAC9-208ENST00000417496 MSNP26038 577 aaKnown RBP17.52■□□□□ 0.4
HDAC9-208ENST00000417496 CWF19L2Q2TBE0 894 aaKnown RBP17.52■□□□□ 0.4
HDAC9-208ENST00000417496 LSG1Q9H089 658 aaKnown RBP17.52■□□□□ 0.4
HDAC9-208ENST00000417496 USP48Q86UV5 1035 aa17.52■□□□□ 0.39
HDAC9-208ENST00000417496 AOX1Q06278 1338 aa17.52■□□□□ 0.39
HDAC9-208ENST00000417496 ADCY9O60503 1353 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 AK2P54819 239 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 RAD50Q92878 1312 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 TUBGCP6Q96RT7 1819 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 ANKARQ7Z5J8 1434 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 LMOD2Q6P5Q4 547 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 CNTROBQ8N137 903 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.51■□□□□ 0.39
HDAC9-208ENST00000417496 MAP3K2Q9Y2U5 619 aa17.51■□□□□ 0.39
HDAC9-208ENST00000417496 RUFY3Q7L099 469 aa17.5■□□□□ 0.39
HDAC9-208ENST00000417496 PDLIM2Q96JY6 352 aa17.5■□□□□ 0.39
HDAC9-208ENST00000417496 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.5■□□□□ 0.39
HDAC9-208ENST00000417496 MARF1Q9Y4F3 1742 aaKnown RBP17.5■□□□□ 0.39
HDAC9-208ENST00000417496 MBD3O95983 291 aa17.5■□□□□ 0.39
HDAC9-208ENST00000417496 C9orf78Q9NZ63 289 aaPredicted RBP17.5■□□□□ 0.39
HDAC9-208ENST00000417496 PXDNLA1KZ92 1463 aa17.49■□□□□ 0.39
HDAC9-208ENST00000417496 PTH1RQ03431 593 aa17.49■□□□□ 0.39
HDAC9-208ENST00000417496 KIAA1211Q6ZU35 1233 aa17.49■□□□□ 0.39
HDAC9-208ENST00000417496 IL17RAQ96F46 866 aa17.49■□□□□ 0.39
HDAC9-208ENST00000417496 LARGE1O95461 756 aa17.49■□□□□ 0.39
HDAC9-208ENST00000417496 ADCK5Q3MIX3 580 aa17.49■□□□□ 0.39
HDAC9-208ENST00000417496 TTC14Q96N46 770 aa17.49■□□□□ 0.39
HDAC9-208ENST00000417496 CASTP20810 708 aaKnown RBP17.48■□□□□ 0.39
HDAC9-208ENST00000417496 MPNDQ8N594 471 aa17.48■□□□□ 0.39
HDAC9-208ENST00000417496 CNPY2Q9Y2B0 182 aa17.48■□□□□ 0.39
HDAC9-208ENST00000417496 AIMP1Q12904 312 aaKnown RBP17.48■□□□□ 0.39
HDAC9-208ENST00000417496 RPAP1Q9BWH6 1393 aaPredicted RBP17.47■□□□□ 0.39
HDAC9-208ENST00000417496 WDR33Q9C0J8 1336 aaKnown RBP17.47■□□□□ 0.39
HDAC9-208ENST00000417496 AKAP4Q5JQC9 854 aa17.47■□□□□ 0.39
HDAC9-208ENST00000417496 DBF4Q9UBU7 674 aaPredicted RBP17.47■□□□□ 0.39
HDAC9-208ENST00000417496 COL9A3Q14050 684 aaPredicted RBP17.47■□□□□ 0.39
HDAC9-208ENST00000417496 CLASRPQ8N2M8 674 aaKnown RBP17.47■□□□□ 0.39
HDAC9-208ENST00000417496 DIAPH3Q9NSV4 1193 aa17.47■□□□□ 0.39
HDAC9-208ENST00000417496 NOL7Q9UMY1 257 aaKnown RBP17.47■□□□□ 0.39
HDAC9-208ENST00000417496 PRPF40BQ6NWY9 871 aaKnown RBP17.46■□□□□ 0.39
HDAC9-208ENST00000417496 ORAI2Q96SN7 254 aa17.46■□□□□ 0.39
HDAC9-208ENST00000417496 RNMTO43148 476 aaKnown RBP17.46■□□□□ 0.38
HDAC9-208ENST00000417496 GIGYF1O75420 1035 aaPredicted RBP17.46■□□□□ 0.38
HDAC9-208ENST00000417496 SYT1P21579 422 aa17.46■□□□□ 0.38
HDAC9-208ENST00000417496 LIMCH1Q9UPQ0 1083 aa17.46■□□□□ 0.38
HDAC9-208ENST00000417496 GLRX3O76003 335 aaKnown RBP17.45■□□□□ 0.38
HDAC9-208ENST00000417496 PLEKHO1Q53GL0 409 aaPredicted RBP17.45■□□□□ 0.38
HDAC9-208ENST00000417496 TSPY26PQ9H489 355 aa17.45■□□□□ 0.38
HDAC9-208ENST00000417496 GCP02774 474 aa17.45■□□□□ 0.38
HDAC9-208ENST00000417496 HOXB7P09629 217 aa17.45■□□□□ 0.38
HDAC9-208ENST00000417496 C1orf141Q5JVX7 400 aa17.45■□□□□ 0.38
HDAC9-208ENST00000417496 AXIN2Q9Y2T1 843 aa17.45■□□□□ 0.38
HDAC9-208ENST00000417496 IFIT2P09913 472 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms