RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 DALRD3Q5D0E6 543 aaKnown RBP17.6■□□□□ 0.41
LINC00339-202ENST00000416769 BCL2L12Q9HB09 334 aa17.6■□□□□ 0.41
LINC00339-202ENST00000416769 RNF181Q9P0P0 153 aa17.6■□□□□ 0.41
LINC00339-202ENST00000416769 ZBTB1Q9Y2K1 713 aa17.6■□□□□ 0.41
LINC00339-202ENST00000416769 CARMIL3Q8ND23 1372 aa17.6■□□□□ 0.41
LINC00339-202ENST00000416769 WDR90Q96KV7 1748 aa17.6■□□□□ 0.41
LINC00339-202ENST00000416769 RNMTO43148 476 aaKnown RBP17.59■□□□□ 0.41
LINC00339-202ENST00000416769 CYP19A1P11511 503 aaPredicted RBP17.59■□□□□ 0.41
LINC00339-202ENST00000416769 APLP1P51693 650 aa17.59■□□□□ 0.41
LINC00339-202ENST00000416769 NFIXQ14938 502 aa17.59■□□□□ 0.41
LINC00339-202ENST00000416769 MTHFSDQ2M296 383 aaKnown RBP17.58■□□□□ 0.4
LINC00339-202ENST00000416769 AKAP4Q5JQC9 854 aa17.58■□□□□ 0.4
LINC00339-202ENST00000416769 KNSTRNQ9Y448 316 aa17.58■□□□□ 0.4
LINC00339-202ENST00000416769 RRAGCQ9HB90 399 aa17.57■□□□□ 0.4
LINC00339-202ENST00000416769 COL15A1P39059 1388 aa17.56■□□□□ 0.4
LINC00339-202ENST00000416769 NRXN2Q9P2S2 1712 aa17.56■□□□□ 0.4
LINC00339-202ENST00000416769 KIF7Q2M1P5 1343 aa17.56■□□□□ 0.4
LINC00339-202ENST00000416769 ZPR1O75312 459 aa17.55■□□□□ 0.4
LINC00339-202ENST00000416769 CNGB1Q14028 1251 aaPredicted RBP17.55■□□□□ 0.4
LINC00339-202ENST00000416769 UBR2Q8IWV8 1755 aa17.55■□□□□ 0.4
LINC00339-202ENST00000416769 DLEC1Q9Y238 1755 aa17.54■□□□□ 0.4
LINC00339-202ENST00000416769 CC2D1BQ5T0F9 858 aaKnown RBP17.54■□□□□ 0.4
LINC00339-202ENST00000416769 CCDC24Q8N4L8 307 aa17.54■□□□□ 0.4
LINC00339-202ENST00000416769 RBM46Q8TBY0 533 aaKnown RBP17.54■□□□□ 0.4
LINC00339-202ENST00000416769 CCDC88AQ3V6T2 1871 aa17.53■□□□□ 0.4
LINC00339-202ENST00000416769 ANKRD31Q8N7Z5 1873 aa17.53■□□□□ 0.4
LINC00339-202ENST00000416769 CANXP27824 592 aaKnown RBP17.53■□□□□ 0.4
LINC00339-202ENST00000416769 BICDL1Q6ZP65 573 aa17.53■□□□□ 0.4
LINC00339-202ENST00000416769 NARFQ9UHQ1 456 aa17.53■□□□□ 0.4
LINC00339-202ENST00000416769 TNRC6CQ9HCJ0 1690 aaKnown RBP17.52■□□□□ 0.4
LINC00339-202ENST00000416769 COL3A1P02461 1466 aaPredicted RBP17.52■□□□□ 0.4
LINC00339-202ENST00000416769 SERPINB2P05120 415 aa17.52■□□□□ 0.4
LINC00339-202ENST00000416769 COL11A2P13942 1736 aaPredicted RBP17.51■□□□□ 0.39
LINC00339-202ENST00000416769 TIAM2Q8IVF5 1701 aa17.51■□□□□ 0.39
LINC00339-202ENST00000416769 PER1O15534 1290 aaPredicted RBP17.5■□□□□ 0.39
LINC00339-202ENST00000416769 C16orf71Q8IYS4 520 aaPredicted RBP17.5■□□□□ 0.39
LINC00339-202ENST00000416769 KDM2BQ8NHM5 1336 aa17.49■□□□□ 0.39
LINC00339-202ENST00000416769 NFKBIEO00221 500 aa17.49■□□□□ 0.39
LINC00339-202ENST00000416769 C2CD5Q86YS7 1000 aa17.49■□□□□ 0.39
LINC00339-202ENST00000416769 ZNF496Q96IT1 587 aaPredicted RBP17.49■□□□□ 0.39
LINC00339-202ENST00000416769 DIAPH1O60610 1272 aaKnown RBP17.48■□□□□ 0.39
LINC00339-202ENST00000416769 TBC1D9BQ66K14 1250 aa17.48■□□□□ 0.39
LINC00339-202ENST00000416769 IL17REQ8NFR9 667 aa17.48■□□□□ 0.39
LINC00339-202ENST00000416769 KLRG1Q96E93 195 aa17.48■□□□□ 0.39
LINC00339-202ENST00000416769 ZNF219Q9P2Y4 722 aaPredicted RBP17.48■□□□□ 0.39
LINC00339-202ENST00000416769 SCN7AQ01118 1682 aa17.48■□□□□ 0.39
LINC00339-202ENST00000416769 SIPA1L3O60292 1781 aaPredicted RBP17.48■□□□□ 0.39
LINC00339-202ENST00000416769 KCNQ3O43525 872 aa17.47■□□□□ 0.39
LINC00339-202ENST00000416769 EIF5P55010 431 aaKnown RBP17.47■□□□□ 0.39
LINC00339-202ENST00000416769 COL13A1Q5TAT6 717 aaPredicted RBP17.47■□□□□ 0.39
LINC00339-202ENST00000416769 ZNF330Q9Y3S2 320 aaPredicted RBP17.47■□□□□ 0.39
LINC00339-202ENST00000416769 PCNTO95613 3336 aa17.47■□□□□ 0.39
LINC00339-202ENST00000416769 FSTL1Q12841 308 aa17.46■□□□□ 0.39
LINC00339-202ENST00000416769 TBC1D2BQ9UPU7 963 aa17.46■□□□□ 0.39
LINC00339-202ENST00000416769 LMNB1P20700 586 aa17.45■□□□□ 0.38
LINC00339-202ENST00000416769 PIP4K2AP48426 406 aaPredicted RBP17.45■□□□□ 0.38
LINC00339-202ENST00000416769 TTLL6Q8N841 843 aa17.45■□□□□ 0.38
LINC00339-202ENST00000416769 CACNA1SQ13698 1873 aa17.44■□□□□ 0.38
LINC00339-202ENST00000416769 POTECB2RU33 542 aa17.44■□□□□ 0.38
LINC00339-202ENST00000416769 U2SURPO15042 1029 aaKnown RBP17.44■□□□□ 0.38
LINC00339-202ENST00000416769 VSIG10Q8N0Z9 540 aa17.44■□□□□ 0.38
LINC00339-202ENST00000416769 JMYQ8N9B5 988 aa17.44■□□□□ 0.38
LINC00339-202ENST00000416769 HEG1Q9ULI3 1381 aa17.43■□□□□ 0.38
LINC00339-202ENST00000416769 PRAMEF22A3QJZ6 481 aa17.43■□□□□ 0.38
LINC00339-202ENST00000416769 A1BGP04217 495 aa17.43■□□□□ 0.38
LINC00339-202ENST00000416769 PRR5LQ6MZQ0 368 aa17.43■□□□□ 0.38
LINC00339-202ENST00000416769 SLX4Q8IY92 1834 aa17.42■□□□□ 0.38
LINC00339-202ENST00000416769 GLTPD2A6NH11 291 aa17.42■□□□□ 0.38
LINC00339-202ENST00000416769 C21orf2O43822 256 aa17.42■□□□□ 0.38
LINC00339-202ENST00000416769 ZNF790Q6PG37 636 aa17.42■□□□□ 0.38
LINC00339-202ENST00000416769 TTC5Q8N0Z6 440 aa17.42■□□□□ 0.38
LINC00339-202ENST00000416769 SMC1BQ8NDV3 1235 aa17.42■□□□□ 0.38
LINC00339-202ENST00000416769 ZNF622Q969S3 477 aaKnown RBP eCLIP17.42■□□□□ 0.38
LINC00339-202ENST00000416769 PHACTR3Q96KR7 559 aa17.42■□□□□ 0.38
LINC00339-202ENST00000416769 FER1L6Q2WGJ9 1857 aa17.41■□□□□ 0.38
LINC00339-202ENST00000416769 H0YIN7 160 aa17.41■□□□□ 0.38
LINC00339-202ENST00000416769 CAMTA2O94983 1202 aa17.4■□□□□ 0.38
LINC00339-202ENST00000416769 STARD3NLO95772 234 aa17.4■□□□□ 0.38
LINC00339-202ENST00000416769 BCORQ6W2J9 1755 aa17.4■□□□□ 0.38
LINC00339-202ENST00000416769 GNAT3A8MTJ3 354 aa17.39■□□□□ 0.37
LINC00339-202ENST00000416769 CAPN15O75808 1086 aa17.39■□□□□ 0.37
LINC00339-202ENST00000416769 POTEIP0CG38 1075 aa17.39■□□□□ 0.37
LINC00339-202ENST00000416769 POTEJP0CG39 1038 aa17.39■□□□□ 0.37
LINC00339-202ENST00000416769 TEFQ10587 303 aa17.39■□□□□ 0.37
LINC00339-202ENST00000416769 DICER1Q9UPY3 1922 aaKnown RBP17.39■□□□□ 0.37
LINC00339-202ENST00000416769 VEGFAP15692 232 aaPredicted RBP17.38■□□□□ 0.37
LINC00339-202ENST00000416769 ZC3H4Q9UPT8 1303 aaKnown RBP17.38■□□□□ 0.37
LINC00339-202ENST00000416769 PRKAR2BP31323 418 aa17.37■□□□□ 0.37
LINC00339-202ENST00000416769 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
LINC00339-202ENST00000416769 USP16Q9Y5T5 823 aa17.37■□□□□ 0.37
LINC00339-202ENST00000416769 CEMIPQ8WUJ3 1361 aa17.37■□□□□ 0.37
LINC00339-202ENST00000416769 A0A087WZG4 1122 aa17.36■□□□□ 0.37
LINC00339-202ENST00000416769 IL6STP40189 918 aaPredicted RBP17.36■□□□□ 0.37
LINC00339-202ENST00000416769 OLFM4Q6UX06 510 aa17.36■□□□□ 0.37
LINC00339-202ENST00000416769 GAS2L2Q8NHY3 880 aa17.36■□□□□ 0.37
LINC00339-202ENST00000416769 RSPH6AQ9H0K4 717 aa17.36■□□□□ 0.37
LINC00339-202ENST00000416769 ERFEQ4G0M1 354 aa17.35■□□□□ 0.37
LINC00339-202ENST00000416769 CNBD1Q8NA66 436 aa17.35■□□□□ 0.37
LINC00339-202ENST00000416769 FMNL2Q96PY5 1086 aa17.35■□□□□ 0.37
LINC00339-202ENST00000416769 DDNO94850 711 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms