RNA–Protein interactions for RNA: ENST00000412218.1

LINC01643-201, Transcript of long intergenic non-protein coding RNA 1643, humanhuman

TSL 5 BASIC

Gene LINC01643, Length 757 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01643-201ENST00000412218 CHD4Q14839 1912 aa13.51□□□□□ -0.25
LINC01643-201ENST00000412218 BTBD11A6QL63 1104 aa13.51□□□□□ -0.25
LINC01643-201ENST00000412218 TGFB2P61812 414 aa13.51□□□□□ -0.25
LINC01643-201ENST00000412218 DDR1Q08345 913 aa13.51□□□□□ -0.25
LINC01643-201ENST00000412218 USPL1Q5W0Q7 1092 aa13.51□□□□□ -0.25
LINC01643-201ENST00000412218 MCM10Q7L590 875 aa13.51□□□□□ -0.25
LINC01643-201ENST00000412218 HTATSF1O43719 755 aaKnown RBP13.5□□□□□ -0.25
LINC01643-201ENST00000412218 ZPR1O75312 459 aa13.5□□□□□ -0.25
LINC01643-201ENST00000412218 STARD3NLO95772 234 aa13.5□□□□□ -0.25
LINC01643-201ENST00000412218 RTF1Q92541 710 aaKnown RBP13.5□□□□□ -0.25
LINC01643-201ENST00000412218 FMNL2Q96PY5 1086 aa13.5□□□□□ -0.25
LINC01643-201ENST00000412218 NARFQ9UHQ1 456 aa13.5□□□□□ -0.25
LINC01643-201ENST00000412218 WWC3Q9ULE0 1092 aa13.5□□□□□ -0.25
LINC01643-201ENST00000412218 POLRMTO00411 1230 aaKnown RBP13.49□□□□□ -0.25
LINC01643-201ENST00000412218 KCNQ3O43525 872 aa13.49□□□□□ -0.25
LINC01643-201ENST00000412218 CANXP27824 592 aaKnown RBP13.49□□□□□ -0.25
LINC01643-201ENST00000412218 TM4SF1P30408 202 aa13.49□□□□□ -0.25
LINC01643-201ENST00000412218 DDX10Q13206 875 aaKnown RBP13.49□□□□□ -0.25
LINC01643-201ENST00000412218 RALBP1Q15311 655 aa13.49□□□□□ -0.25
LINC01643-201ENST00000412218 PLEKHF1Q96S99 279 aa13.49□□□□□ -0.25
LINC01643-201ENST00000412218 TEX13AQ9BXU3 409 aaPredicted RBP13.49□□□□□ -0.25
LINC01643-201ENST00000412218 EIF5P55010 431 aaKnown RBP13.48□□□□□ -0.25
LINC01643-201ENST00000412218 DCTN1Q14203 1278 aa13.48□□□□□ -0.25
LINC01643-201ENST00000412218 BCL2L12Q9HB09 334 aa13.48□□□□□ -0.25
LINC01643-201ENST00000412218 GOLGB1Q14789 3259 aaKnown RBP13.47□□□□□ -0.25
LINC01643-201ENST00000412218 SCN7AQ01118 1682 aa13.47□□□□□ -0.25
LINC01643-201ENST00000412218 A0A0G2JLW4 131 aa13.47□□□□□ -0.25
LINC01643-201ENST00000412218 DPEP1P16444 411 aa13.47□□□□□ -0.25
LINC01643-201ENST00000412218 N4BP2Q86UW6 1770 aaPredicted RBP13.47□□□□□ -0.25
LINC01643-201ENST00000412218 ADCY9O60503 1353 aa13.46□□□□□ -0.25
LINC01643-201ENST00000412218 A0A087WZG4 1122 aa13.46□□□□□ -0.25
LINC01643-201ENST00000412218 NEFMP07197 916 aa13.46□□□□□ -0.25
LINC01643-201ENST00000412218 NFIXQ14938 502 aa13.46□□□□□ -0.25
LINC01643-201ENST00000412218 MYBBP1AQ9BQG0 1328 aaKnown RBP13.45□□□□□ -0.26
LINC01643-201ENST00000412218 NRXN2Q9P2S2 1712 aa13.45□□□□□ -0.26
LINC01643-201ENST00000412218 ANP32CO43423 234 aa13.45□□□□□ -0.26
LINC01643-201ENST00000412218 KCNA3P22001 575 aa13.45□□□□□ -0.26
LINC01643-201ENST00000412218 IL6STP40189 918 aaPredicted RBP13.45□□□□□ -0.26
LINC01643-201ENST00000412218 NFE2L2Q16236 605 aa13.45□□□□□ -0.26
LINC01643-201ENST00000412218 ATP10DQ9P241 1426 aa13.45□□□□□ -0.26
LINC01643-201ENST00000412218 MAPK8IP3Q9UPT6 1336 aa13.44□□□□□ -0.26
LINC01643-201ENST00000412218 PRAMEF22A3QJZ6 481 aa13.44□□□□□ -0.26
LINC01643-201ENST00000412218 A1BGP04217 495 aa13.44□□□□□ -0.26
LINC01643-201ENST00000412218 PNNQ9H307 717 aaKnown RBP13.44□□□□□ -0.26
LINC01643-201ENST00000412218 BCS1LQ9Y276 419 aa13.44□□□□□ -0.26
LINC01643-201ENST00000412218 BRCA1P38398 1863 aaKnown RBP13.44□□□□□ -0.26
LINC01643-201ENST00000412218 CCER2I3L3R5 266 aa13.43□□□□□ -0.26
LINC01643-201ENST00000412218 SNRPA1P09661 255 aaKnown RBP13.43□□□□□ -0.26
LINC01643-201ENST00000412218 TAF7Q15545 349 aaPredicted RBP13.43□□□□□ -0.26
LINC01643-201ENST00000412218 ZNF330Q9Y3S2 320 aaPredicted RBP13.43□□□□□ -0.26
LINC01643-201ENST00000412218 USP16Q9Y5T5 823 aa13.43□□□□□ -0.26
LINC01643-201ENST00000412218 KDM3BQ7LBC6 1761 aa13.43□□□□□ -0.26
LINC01643-201ENST00000412218 SERPINB2P05120 415 aa13.42□□□□□ -0.26
LINC01643-201ENST00000412218 TBC1D2BQ9UPU7 963 aa13.42□□□□□ -0.26
LINC01643-201ENST00000412218 BCORQ6W2J9 1755 aa13.42□□□□□ -0.26
LINC01643-201ENST00000412218 DLG5Q8TDM6 1919 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 LAMB4A4D0S4 1761 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 CAMTA2O94983 1202 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 CHRNA5P30532 468 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 PIP4K2AP48426 406 aaPredicted RBP13.41□□□□□ -0.26
LINC01643-201ENST00000412218 TBC1D9BQ66K14 1250 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 BICDL1Q6ZP65 573 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 PNISRQ8TF01 805 aaKnown RBP13.41□□□□□ -0.26
LINC01643-201ENST00000412218 YTHDC1Q96MU7 727 aaKnown RBP13.41□□□□□ -0.26
LINC01643-201ENST00000412218 THUMPD2Q9BTF0 503 aaKnown RBP13.41□□□□□ -0.26
LINC01643-201ENST00000412218 MIS18AQ9NYP9 233 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 PIM2Q9P1W9 311 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 CARMIL3Q8ND23 1372 aa13.41□□□□□ -0.26
LINC01643-201ENST00000412218 AFDNP55196 1824 aaKnown RBP13.41□□□□□ -0.26
LINC01643-201ENST00000412218 DALRD3Q5D0E6 543 aaKnown RBP13.4□□□□□ -0.26
LINC01643-201ENST00000412218 NBPF26B4DH59 902 aa13.39□□□□□ -0.27
LINC01643-201ENST00000412218 GIGYF1O75420 1035 aaPredicted RBP13.39□□□□□ -0.27
LINC01643-201ENST00000412218 NBPF10Q6P3W6 841 aaKnown RBP13.39□□□□□ -0.27
LINC01643-201ENST00000412218 NPM2Q86SE8 214 aaKnown RBP13.39□□□□□ -0.27
LINC01643-201ENST00000412218 DZIP3Q86Y13 1208 aaKnown RBP13.39□□□□□ -0.27
LINC01643-201ENST00000412218 NBPF15Q8N660 670 aa13.39□□□□□ -0.27
LINC01643-201ENST00000412218 DLEC1Q9Y238 1755 aa13.38□□□□□ -0.27
LINC01643-201ENST00000412218 EIF4A1P60842 406 aaKnown RBP13.38□□□□□ -0.27
LINC01643-201ENST00000412218 ARHGAP27Q6ZUM4 889 aa13.38□□□□□ -0.27
LINC01643-201ENST00000412218 ARFGEF1Q9Y6D6 1849 aa13.38□□□□□ -0.27
LINC01643-201ENST00000412218 RIPK4P57078 832 aa13.37□□□□□ -0.27
LINC01643-201ENST00000412218 C1QTNF8P60827 252 aa13.37□□□□□ -0.27
LINC01643-201ENST00000412218 PRR5LQ6MZQ0 368 aa13.37□□□□□ -0.27
LINC01643-201ENST00000412218 PRKRIP1Q9H875 184 aaPredicted RBP13.37□□□□□ -0.27
LINC01643-201ENST00000412218 RGL2O15211 777 aa13.36□□□□□ -0.27
LINC01643-201ENST00000412218 TMPOP42166 694 aaKnown RBP13.36□□□□□ -0.27
LINC01643-201ENST00000412218 LMOD3Q0VAK6 560 aa13.36□□□□□ -0.27
LINC01643-201ENST00000412218 CLEC4GQ6UXB4 293 aa13.36□□□□□ -0.27
LINC01643-201ENST00000412218 POTEDQ86YR6 584 aa13.36□□□□□ -0.27
LINC01643-201ENST00000412218 C2CD5Q86YS7 1000 aa13.36□□□□□ -0.27
LINC01643-201ENST00000412218 SETDB2Q96T68 719 aa13.36□□□□□ -0.27
LINC01643-201ENST00000412218 GPBP1L1Q9HC44 474 aaPredicted RBP13.36□□□□□ -0.27
LINC01643-201ENST00000412218 WDR43Q15061 677 aaKnown RBP eCLIP13.35□□□□□ -0.27
LINC01643-201ENST00000412218 CCDC146Q8IYE0 955 aa13.35□□□□□ -0.27
LINC01643-201ENST00000412218 CNBD1Q8NA66 436 aa13.35□□□□□ -0.27
LINC01643-201ENST00000412218 ZNF526Q8TF50 670 aaPredicted RBP13.35□□□□□ -0.27
LINC01643-201ENST00000412218 BRIP1Q9BX63 1249 aa13.35□□□□□ -0.27
LINC01643-201ENST00000412218 ZNF652Q9Y2D9 606 aa13.35□□□□□ -0.27
LINC01643-201ENST00000412218 ANKRD31Q8N7Z5 1873 aa13.35□□□□□ -0.27
LINC01643-201ENST00000412218 COL11A2P13942 1736 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms