RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CAMKK2Q96RR4 588 aa17.21■□□□□ 0.35
LIMS1-204ENST00000409441 TEX13AQ9BXU3 409 aaPredicted RBP17.21■□□□□ 0.35
LIMS1-204ENST00000409441 USP16Q9Y5T5 823 aa17.21■□□□□ 0.35
LIMS1-204ENST00000409441 KDM3BQ7LBC6 1761 aa17.21■□□□□ 0.35
LIMS1-204ENST00000409441 ITPK1Q13572 414 aa17.21■□□□□ 0.35
LIMS1-204ENST00000409441 EZH2Q15910 746 aaKnown RBP17.21■□□□□ 0.35
LIMS1-204ENST00000409441 TWISTNBQ3B726 338 aaPredicted RBP17.21■□□□□ 0.35
LIMS1-204ENST00000409441 LRRC4BQ9NT99 713 aa17.21■□□□□ 0.35
LIMS1-204ENST00000409441 RBM19Q9Y4C8 960 aaKnown RBP17.21■□□□□ 0.35
LIMS1-204ENST00000409441 PAPPAQ13219 1627 aa17.2■□□□□ 0.34
LIMS1-204ENST00000409441 VAMP4O75379 141 aa17.2■□□□□ 0.34
LIMS1-204ENST00000409441 STARD3NLO95772 234 aa17.19■□□□□ 0.34
LIMS1-204ENST00000409441 HOXB7P09629 217 aa17.19■□□□□ 0.34
LIMS1-204ENST00000409441 EIF2S2P20042 333 aaKnown RBP17.19■□□□□ 0.34
LIMS1-204ENST00000409441 CNKSR2Q8WXI2 1034 aa17.19■□□□□ 0.34
LIMS1-204ENST00000409441 TNS1Q9HBL0 1735 aaKnown RBP17.18■□□□□ 0.34
LIMS1-204ENST00000409441 SOS1Q07889 1333 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-204ENST00000409441 CYP19A1P11511 503 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-204ENST00000409441 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-204ENST00000409441 EXOC6Q8TAG9 804 aa17.18■□□□□ 0.34
LIMS1-204ENST00000409441 NECTIN2Q92692 538 aa17.18■□□□□ 0.34
LIMS1-204ENST00000409441 RNF216Q9NWF9 866 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-204ENST00000409441 UBR2Q8IWV8 1755 aa17.17■□□□□ 0.34
LIMS1-204ENST00000409441 LINC00116Q8NCU8 138 aa17.17■□□□□ 0.34
LIMS1-204ENST00000409441 HMGB2P26583 209 aaKnown RBP17.16■□□□□ 0.34
LIMS1-204ENST00000409441 HDGFL1Q5TGJ6 251 aa17.16■□□□□ 0.34
LIMS1-204ENST00000409441 CHMP4AQ9BY43 222 aa17.16■□□□□ 0.34
LIMS1-204ENST00000409441 A1BGP04217 495 aa17.15■□□□□ 0.34
LIMS1-204ENST00000409441 CT47B1P0C2W7 299 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-204ENST00000409441 CCDC30Q5VVM6 783 aa17.14■□□□□ 0.33
LIMS1-204ENST00000409441 LY75O60449 1722 aa17.14■□□□□ 0.33
LIMS1-204ENST00000409441 TCERG1O14776 1098 aaKnown RBP17.14■□□□□ 0.33
LIMS1-204ENST00000409441 CRKLP46109 303 aaKnown RBP17.14■□□□□ 0.33
LIMS1-204ENST00000409441 INTS5Q6P9B9 1019 aaKnown RBP17.14■□□□□ 0.33
LIMS1-204ENST00000409441 RC3H1Q5TC82 1133 aaKnown RBP17.13■□□□□ 0.33
LIMS1-204ENST00000409441 CCDC87Q9NVE4 849 aa17.13■□□□□ 0.33
LIMS1-204ENST00000409441 CANXP27824 592 aaKnown RBP17.12■□□□□ 0.33
LIMS1-204ENST00000409441 PIP4K2AP48426 406 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-204ENST00000409441 ZNF428Q96B54 188 aa17.12■□□□□ 0.33
LIMS1-204ENST00000409441 DBF4Q9UBU7 674 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-204ENST00000409441 NBPF26B4DH59 902 aa17.11■□□□□ 0.33
LIMS1-204ENST00000409441 PDIA6Q15084 440 aa17.11■□□□□ 0.33
LIMS1-204ENST00000409441 NBPF14Q5TI25 921 aa17.11■□□□□ 0.33
LIMS1-204ENST00000409441 NBPF10Q6P3W6 841 aaKnown RBP17.11■□□□□ 0.33
LIMS1-204ENST00000409441 NBPF15Q8N660 670 aa17.11■□□□□ 0.33
LIMS1-204ENST00000409441 CHPF2Q9P2E5 772 aa17.11■□□□□ 0.33
LIMS1-204ENST00000409441 ZNF831Q5JPB2 1677 aa17.11■□□□□ 0.33
LIMS1-204ENST00000409441 CNTNAP4Q9C0A0 1308 aa17.11■□□□□ 0.33
LIMS1-204ENST00000409441 SLC4A2P04920 1241 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 SSH1Q8WYL5 1049 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 STK31Q9BXU1 1019 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 DDX21Q9NR30 783 aaKnown RBP eCLIP17.1■□□□□ 0.33
LIMS1-204ENST00000409441 ZBTB1Q9Y2K1 713 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 ERBB4Q15303 1308 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 PLIN1O60240 522 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 ANXA1P04083 346 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 MYL6BP14649 208 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 RARSP54136 660 aaKnown RBP17.1■□□□□ 0.33
LIMS1-204ENST00000409441 PROSER3Q2NL68 480 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 AK7Q96M32 723 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 CRBNQ96SW2 442 aa17.1■□□□□ 0.33
LIMS1-204ENST00000409441 TJP1Q07157 1748 aa17.09■□□□□ 0.33
LIMS1-204ENST00000409441 GNPATO15228 680 aa17.09■□□□□ 0.33
LIMS1-204ENST00000409441 ALDH1L2Q3SY69 923 aa17.09■□□□□ 0.33
LIMS1-204ENST00000409441 AKT1S1Q96B36 256 aa17.09■□□□□ 0.33
LIMS1-204ENST00000409441 RGPD3A6NKT7 1758 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-204ENST00000409441 RGPD4Q7Z3J3 1758 aa17.09■□□□□ 0.33
LIMS1-204ENST00000409441 C5P01031 1676 aa17.09■□□□□ 0.33
LIMS1-204ENST00000409441 RPS6KA4O75676 772 aa17.08■□□□□ 0.32
LIMS1-204ENST00000409441 HYPKQ9NX55 129 aa17.08■□□□□ 0.32
LIMS1-204ENST00000409441 IL6STP40189 918 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-204ENST00000409441 EIF5P55010 431 aaKnown RBP17.07■□□□□ 0.32
LIMS1-204ENST00000409441 ZNF827Q17R98 1081 aa17.07■□□□□ 0.32
LIMS1-204ENST00000409441 SMIM5Q71RC9 77 aa17.07■□□□□ 0.32
LIMS1-204ENST00000409441 BCL2L13Q9BXK5 485 aa17.07■□□□□ 0.32
LIMS1-204ENST00000409441 TFCP2L1Q9NZI6 479 aa17.07■□□□□ 0.32
LIMS1-204ENST00000409441 RTCBQ9Y3I0 505 aaKnown RBP17.07■□□□□ 0.32
LIMS1-204ENST00000409441 ZNF330Q9Y3S2 320 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-204ENST00000409441 LRP10Q7Z4F1 713 aa17.07■□□□□ 0.32
LIMS1-204ENST00000409441 NPM2Q86SE8 214 aaKnown RBP17.07■□□□□ 0.32
LIMS1-204ENST00000409441 MRPL50Q8N5N7 158 aaKnown RBP17.07■□□□□ 0.32
LIMS1-204ENST00000409441 SMC4Q9NTJ3 1288 aa17.07■□□□□ 0.32
LIMS1-204ENST00000409441 STK32BQ9NY57 414 aa17.07■□□□□ 0.32
LIMS1-204ENST00000409441 CICQ96RK0 1608 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-204ENST00000409441 BCAR3O75815 825 aa17.06■□□□□ 0.32
LIMS1-204ENST00000409441 SLC15A2Q16348 729 aa17.06■□□□□ 0.32
LIMS1-204ENST00000409441 AMIGO3Q86WK7 504 aa17.06■□□□□ 0.32
LIMS1-204ENST00000409441 PHAXQ9H814 394 aaKnown RBP17.06■□□□□ 0.32
LIMS1-204ENST00000409441 TRAPPC3LQ5T215 181 aa17.05■□□□□ 0.32
LIMS1-204ENST00000409441 COPS6Q7L5N1 327 aa17.05■□□□□ 0.32
LIMS1-204ENST00000409441 G2E3Q7L622 706 aa17.05■□□□□ 0.32
LIMS1-204ENST00000409441 ARXQ96QS3 562 aa17.05■□□□□ 0.32
LIMS1-204ENST00000409441 ANO8Q9HCE9 1232 aaPredicted RBP17.05■□□□□ 0.32
LIMS1-204ENST00000409441 C4BP0C0L5 1744 aa17.04■□□□□ 0.32
LIMS1-204ENST00000409441 COL5A3P25940 1745 aaPredicted RBP17.04■□□□□ 0.32
LIMS1-204ENST00000409441 TAF1LQ8IZX4 1826 aa17.04■□□□□ 0.32
LIMS1-204ENST00000409441 SOCS7O14512 581 aa17.04■□□□□ 0.32
LIMS1-204ENST00000409441 AIMP1Q12904 312 aaKnown RBP17.04■□□□□ 0.32
LIMS1-204ENST00000409441 XAGE3Q8WTP9 111 aa17.04■□□□□ 0.32
LIMS1-204ENST00000409441 MYH14Q7Z406 1995 aaKnown RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms