RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 AEBP1Q8IUX7 1158 aa16.54■□□□□ 0.24
SMARCB1-203ENST00000407082 DPEP1P16444 411 aa16.53■□□□□ 0.24
SMARCB1-203ENST00000407082 ATP6V1AP38606 617 aa16.53■□□□□ 0.24
SMARCB1-203ENST00000407082 ANP32AP39687 249 aaKnown RBP16.53■□□□□ 0.24
SMARCB1-203ENST00000407082 NCAPD2Q15021 1401 aa16.53■□□□□ 0.24
SMARCB1-203ENST00000407082 PLIN1O60240 522 aa16.52■□□□□ 0.24
SMARCB1-203ENST00000407082 PRELPP51888 382 aa16.52■□□□□ 0.24
SMARCB1-203ENST00000407082 JMYQ8N9B5 988 aa16.52■□□□□ 0.24
SMARCB1-203ENST00000407082 PXDNLA1KZ92 1463 aa16.52■□□□□ 0.23
SMARCB1-203ENST00000407082 MAPK8IP3Q9UPT6 1336 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 WDR90Q96KV7 1748 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 UBR3Q6ZT12 1888 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 FSTL1Q12841 308 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 ITPK1Q13572 414 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 TRAPPC3LQ5T215 181 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 RRAGCQ9HB90 399 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 TMOD3Q9NYL9 352 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 ASAP1Q9ULH1 1129 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 KDRP35968 1356 aa16.51■□□□□ 0.23
SMARCB1-203ENST00000407082 TOGARAM1Q9Y4F4 1720 aa16.5■□□□□ 0.23
SMARCB1-203ENST00000407082 CANXP27824 592 aaKnown RBP16.5■□□□□ 0.23
SMARCB1-203ENST00000407082 CCDC87Q9NVE4 849 aa16.5■□□□□ 0.23
SMARCB1-203ENST00000407082 N4BP2Q86UW6 1770 aaPredicted RBP16.5■□□□□ 0.23
SMARCB1-203ENST00000407082 IL16Q14005 1332 aa16.49■□□□□ 0.23
SMARCB1-203ENST00000407082 KDM2BQ8NHM5 1336 aa16.49■□□□□ 0.23
SMARCB1-203ENST00000407082 NLGN1Q8N2Q7 840 aa16.49■□□□□ 0.23
SMARCB1-203ENST00000407082 RTCBQ9Y3I0 505 aaKnown RBP16.49■□□□□ 0.23
SMARCB1-203ENST00000407082 ITGB4P16144 1822 aa16.48■□□□□ 0.23
SMARCB1-203ENST00000407082 RSPH6AQ9H0K4 717 aa16.48■□□□□ 0.23
SMARCB1-203ENST00000407082 RNF181Q9P0P0 153 aa16.48■□□□□ 0.23
SMARCB1-203ENST00000407082 SPG7Q9UQ90 795 aa16.48■□□□□ 0.23
SMARCB1-203ENST00000407082 PARP3Q9Y6F1 533 aa16.48■□□□□ 0.23
SMARCB1-203ENST00000407082 CICQ96RK0 1608 aaPredicted RBP16.48■□□□□ 0.23
SMARCB1-203ENST00000407082 PRKAR2BP31323 418 aa16.47■□□□□ 0.23
SMARCB1-203ENST00000407082 PLEKHO1Q53GL0 409 aaPredicted RBP16.47■□□□□ 0.23
SMARCB1-203ENST00000407082 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.47■□□□□ 0.23
SMARCB1-203ENST00000407082 RFC4P35249 363 aa16.46■□□□□ 0.23
SMARCB1-203ENST00000407082 AMOTQ4VCS5 1084 aa16.46■□□□□ 0.23
SMARCB1-203ENST00000407082 RBM42Q9BTD8 480 aaKnown RBP16.46■□□□□ 0.23
SMARCB1-203ENST00000407082 PIM2Q9P1W9 311 aa16.46■□□□□ 0.23
SMARCB1-203ENST00000407082 KCPQ6ZWJ8 1503 aa16.45■□□□□ 0.22
SMARCB1-203ENST00000407082 CALD1Q05682 793 aaKnown RBP16.45■□□□□ 0.22
SMARCB1-203ENST00000407082 NEUROD2Q15784 382 aa16.45■□□□□ 0.22
SMARCB1-203ENST00000407082 ARHGEF1Q92888 912 aaKnown RBP16.45■□□□□ 0.22
SMARCB1-203ENST00000407082 PLEKHG2Q9H7P9 1386 aa16.44■□□□□ 0.22
SMARCB1-203ENST00000407082 NKX1-1Q15270 411 aaPredicted RBP16.44■□□□□ 0.22
SMARCB1-203ENST00000407082 DALRD3Q5D0E6 543 aaKnown RBP16.44■□□□□ 0.22
SMARCB1-203ENST00000407082 SMC1BQ8NDV3 1235 aa16.44■□□□□ 0.22
SMARCB1-203ENST00000407082 PHACTR3Q96KR7 559 aa16.44■□□□□ 0.22
SMARCB1-203ENST00000407082 SPINK5Q9NQ38 1064 aaPredicted RBP16.44■□□□□ 0.22
SMARCB1-203ENST00000407082 ATG3Q9NT62 314 aa16.44■□□□□ 0.22
SMARCB1-203ENST00000407082 HSPA1AP0DMV8 641 aaKnown RBP16.43■□□□□ 0.22
SMARCB1-203ENST00000407082 HSPA1BP0DMV9 641 aaKnown RBP16.43■□□□□ 0.22
SMARCB1-203ENST00000407082 PLEKHF1Q96S99 279 aa16.43■□□□□ 0.22
SMARCB1-203ENST00000407082 GYS1P13807 737 aa16.42■□□□□ 0.22
SMARCB1-203ENST00000407082 KCNA3P22001 575 aa16.42■□□□□ 0.22
SMARCB1-203ENST00000407082 TMPOP42166 694 aaKnown RBP16.42■□□□□ 0.22
SMARCB1-203ENST00000407082 MTHFSDQ2M296 383 aaKnown RBP16.42■□□□□ 0.22
SMARCB1-203ENST00000407082 ZNF530Q6P9A1 599 aaPredicted RBP16.42■□□□□ 0.22
SMARCB1-203ENST00000407082 C10orf71Q711Q0 1435 aa16.42■□□□□ 0.22
SMARCB1-203ENST00000407082 PDE4AP27815 886 aa16.41■□□□□ 0.22
SMARCB1-203ENST00000407082 RARSP54136 660 aaKnown RBP16.41■□□□□ 0.22
SMARCB1-203ENST00000407082 C1orf141Q5JVX7 400 aa16.41■□□□□ 0.22
SMARCB1-203ENST00000407082 C20orf194Q5TEA3 1177 aa16.41■□□□□ 0.22
SMARCB1-203ENST00000407082 IFNL2Q8IZJ0 200 aa16.41■□□□□ 0.22
SMARCB1-203ENST00000407082 KIF13BQ9NQT8 1826 aa16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 BCAR3O75815 825 aa16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 PHKG2P15735 406 aa16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 CHRNA5P30532 468 aa16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 GAS2L2Q8NHY3 880 aa16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 ZNF428Q96B54 188 aa16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 IPO9Q96P70 1041 aaKnown RBP16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 BACH2Q9BYV9 841 aa16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
SMARCB1-203ENST00000407082 PKD1L3Q7Z443 1732 aa16.39■□□□□ 0.21
SMARCB1-203ENST00000407082 KIAA1551Q9HCM1 1747 aa16.39■□□□□ 0.21
SMARCB1-203ENST00000407082 ADRA2BP18089 450 aa16.39■□□□□ 0.21
SMARCB1-203ENST00000407082 DCAF5Q96JK2 942 aa16.39■□□□□ 0.21
SMARCB1-203ENST00000407082 RPS6KA4O75676 772 aa16.38■□□□□ 0.21
SMARCB1-203ENST00000407082 LMOD3Q0VAK6 560 aa16.38■□□□□ 0.21
SMARCB1-203ENST00000407082 AKAP4Q5JQC9 854 aa16.38■□□□□ 0.21
SMARCB1-203ENST00000407082 HSP90AB1P08238 724 aaKnown RBP16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 RC3H1Q5TC82 1133 aaKnown RBP16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 CLUAP1Q96AJ1 413 aa16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 DDRGK1Q96HY6 314 aa16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 SLC4A9Q96Q91 983 aa16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 ZBTB47Q9UFB7 747 aaPredicted RBP16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 SRP68Q9UHB9 627 aaKnown RBP16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 NOP58Q9Y2X3 529 aaKnown RBP16.37■□□□□ 0.21
SMARCB1-203ENST00000407082 C4AP0C0L4 1744 aa16.36■□□□□ 0.21
SMARCB1-203ENST00000407082 IPO8O15397 1037 aaKnown RBP16.36■□□□□ 0.21
SMARCB1-203ENST00000407082 VEGFAP15692 232 aaPredicted RBP16.36■□□□□ 0.21
SMARCB1-203ENST00000407082 RIPK4P57078 832 aa16.36■□□□□ 0.21
SMARCB1-203ENST00000407082 ZKSCAN2Q63HK3 967 aa16.36■□□□□ 0.21
SMARCB1-203ENST00000407082 CHMP4BQ9H444 224 aaKnown RBP16.36■□□□□ 0.21
SMARCB1-203ENST00000407082 GNAT3A8MTJ3 354 aa16.35■□□□□ 0.21
SMARCB1-203ENST00000407082 RASSF7Q02833 373 aa16.35■□□□□ 0.21
SMARCB1-203ENST00000407082 NFE2L2Q16236 605 aa16.35■□□□□ 0.21
SMARCB1-203ENST00000407082 PTCD1O75127 700 aaKnown RBP16.34■□□□□ 0.21
SMARCB1-203ENST00000407082 FRAT1Q92837 279 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms