RNA–Protein interactions for RNA: ENST00000406438.4

SMCR8-201, Transcript of Smith-Magenis syndrome chromosome region, candidate 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCR8, Length 8,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCR8-201ENST00000406438 HOMER2Q9NSB8 354 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 PTPN23Q9H3S7 1636 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 CCDC85AQ96PX6 553 aaPredicted RBP13.96□□□□□ -0.17
SMCR8-201ENST00000406438 SLC12A7Q9Y666 1083 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 KIF20AO95235 890 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 PAXIP1Q6ZW49 1069 aaPredicted RBP13.96□□□□□ -0.17
SMCR8-201ENST00000406438 CUL7Q14999 1698 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 CATIPQ7Z7H3 387 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 AFAP1Q8N556 730 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 GIMAP7Q8NHV1 300 aa13.96□□□□□ -0.17
SMCR8-201ENST00000406438 ANKRD30BQ9BXX2 1392 aa13.96□□□□□ -0.18
SMCR8-201ENST00000406438 CCDC183Q5T5S1 534 aa13.96□□□□□ -0.18
SMCR8-201ENST00000406438 CCDC83Q8IWF9 413 aa13.96□□□□□ -0.18
SMCR8-201ENST00000406438 ERICH4A6NGS2 130 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 BCCIPQ9P287 314 aaKnown RBP eCLIP13.95□□□□□ -0.18
SMCR8-201ENST00000406438 FCHSD2O94868 740 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 SYCE3A1L190 88 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 CTAGE5O15320 804 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 SSRP1Q08945 709 aaKnown RBP13.95□□□□□ -0.18
SMCR8-201ENST00000406438 WDR78Q5VTH9 848 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 TOP1P11387 765 aaKnown RBP13.95□□□□□ -0.18
SMCR8-201ENST00000406438 SLC5A1P13866 664 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 IFIT5Q13325 482 aaKnown RBP13.95□□□□□ -0.18
SMCR8-201ENST00000406438 DAPK1P53355 1430 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 ANKRD18BA2A2Z9 1011 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 IL1RAPL2Q9NP60 686 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 MACROD2A1Z1Q3 448 aa13.95□□□□□ -0.18
SMCR8-201ENST00000406438 PABPN1LA6NDY0 278 aaKnown RBP13.95□□□□□ -0.18
SMCR8-201ENST00000406438 BAG4O95429 457 aaKnown RBP13.95□□□□□ -0.18
SMCR8-201ENST00000406438 AQRO60306 1485 aaKnown RBP eCLIP13.94□□□□□ -0.18
SMCR8-201ENST00000406438 TTC21AQ8NDW8 1320 aa13.94□□□□□ -0.18
SMCR8-201ENST00000406438 PAFAH1B1P43034 410 aa13.94□□□□□ -0.18
SMCR8-201ENST00000406438 SCAND2PQ9GZW5 306 aaPredicted RBP13.94□□□□□ -0.18
SMCR8-201ENST00000406438 RNF41Q9H4P4 317 aaPredicted RBP13.94□□□□□ -0.18
SMCR8-201ENST00000406438 NAA15Q9BXJ9 866 aaKnown RBP13.94□□□□□ -0.18
SMCR8-201ENST00000406438 ZNF213O14771 459 aa13.94□□□□□ -0.18
SMCR8-201ENST00000406438 UBE4AQ14139 1066 aa13.94□□□□□ -0.18
SMCR8-201ENST00000406438 SH2B1Q9NRF2 756 aaPredicted RBP13.94□□□□□ -0.18
SMCR8-201ENST00000406438 RANBP6O60518 1105 aaKnown RBP13.93□□□□□ -0.18
SMCR8-201ENST00000406438 AMPD3Q01432 767 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 NSD3Q9BZ95 1437 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 CCDC141Q6ZP82 1450 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 TIAM1Q13009 1591 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 NFE2L2Q16236 605 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 MPHOSPH6Q99547 160 aaKnown RBP13.93□□□□□ -0.18
SMCR8-201ENST00000406438 CCDC12Q8WUD4 166 aaPredicted RBP13.93□□□□□ -0.18
SMCR8-201ENST00000406438 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.93□□□□□ -0.18
SMCR8-201ENST00000406438 MICALCLQ6ZW33 695 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 CALML4Q96GE6 196 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 ITSN2Q9NZM3 1697 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 STXBP4Q6ZWJ1 553 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 RPAP2Q8IXW5 612 aaPredicted RBP13.93□□□□□ -0.18
SMCR8-201ENST00000406438 ALS2CR12Q96Q35 445 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 BRPF3Q9ULD4 1205 aa13.93□□□□□ -0.18
SMCR8-201ENST00000406438 BACH2Q9BYV9 841 aa13.92□□□□□ -0.18
SMCR8-201ENST00000406438 PRG4Q92954 1404 aaPredicted RBP13.92□□□□□ -0.18
SMCR8-201ENST00000406438 SMC1AQ14683 1233 aaKnown RBP13.92□□□□□ -0.18
SMCR8-201ENST00000406438 KIF4BQ2VIQ3 1234 aa13.92□□□□□ -0.18
SMCR8-201ENST00000406438 CNNM3Q8NE01 707 aa13.92□□□□□ -0.18
SMCR8-201ENST00000406438 NKTRP30414 1462 aaKnown RBP13.92□□□□□ -0.18
SMCR8-201ENST00000406438 WDR97A6NE52 1622 aa13.92□□□□□ -0.18
SMCR8-201ENST00000406438 KIF5BP33176 963 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 SSX2IPQ9Y2D8 614 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 NUTM1Q86Y26 1132 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 SYCP3Q8IZU3 236 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 PSMD1Q99460 953 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 PYM1Q9BRP8 204 aaKnown RBP13.91□□□□□ -0.18
SMCR8-201ENST00000406438 FERP16591 822 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 BOLA2Q9H3K6 86 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 MX1P20591 662 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 NLRP5P59047 1200 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 TDRD12Q587J7 1177 aaKnown RBP13.91□□□□□ -0.18
SMCR8-201ENST00000406438 EXOC6BQ9Y2D4 811 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 AMOTQ4VCS5 1084 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 SPECC1Q5M775 1068 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 DDX23Q9BUQ8 820 aaKnown RBP13.91□□□□□ -0.18
SMCR8-201ENST00000406438 TCP11L1Q9NUJ3 509 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 CCDC194A0A1B0GVG4 234 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 PTCD1O75127 700 aaKnown RBP13.91□□□□□ -0.18
SMCR8-201ENST00000406438 YEATS4O95619 227 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 FAM114A1Q8IWE2 563 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 TSNARE1Q96NA8 513 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 CC2D2AQ9P2K1 1620 aa13.91□□□□□ -0.18
SMCR8-201ENST00000406438 FSD2A1L4K1 749 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 TMPOP42166 694 aaKnown RBP13.9□□□□□ -0.18
SMCR8-201ENST00000406438 DUSP27Q5VZP5 1158 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 FAM107BQ9H098 131 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 IGF1RP08069 1367 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 RPGRIP1LQ68CZ1 1315 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 SREK1Q8WXA9 508 aaKnown RBP13.9□□□□□ -0.18
SMCR8-201ENST00000406438 TMEM57Q8N5G2 664 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 HYPKQ9NX55 129 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 CCDC175P0C221 793 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 MCM4P33991 863 aa13.9□□□□□ -0.18
SMCR8-201ENST00000406438 TTF1Q15361 905 aaPredicted RBP13.89□□□□□ -0.19
SMCR8-201ENST00000406438 LRRC45Q96CN5 670 aa13.89□□□□□ -0.19
SMCR8-201ENST00000406438 GOLGA8BA8MQT2 603 aa13.89□□□□□ -0.19
SMCR8-201ENST00000406438 XPCQ01831 940 aaPredicted RBP13.89□□□□□ -0.19
SMCR8-201ENST00000406438 HLTFQ14527 1009 aaKnown RBP eCLIP13.89□□□□□ -0.191e-6■■□□□ 14.1
SMCR8-201ENST00000406438 BBXQ8WY36 941 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms