RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 HTRA3P83110 453 aa17.9■□□□□ 0.46
VCX3A-202ENST00000398729 C9orf131Q5VYM1 1079 aa17.9■□□□□ 0.46
VCX3A-202ENST00000398729 TTC5Q8N0Z6 440 aa17.9■□□□□ 0.46
VCX3A-202ENST00000398729 IL17REQ8NFR9 667 aa17.9■□□□□ 0.46
VCX3A-202ENST00000398729 PHACTR3Q96KR7 559 aa17.9■□□□□ 0.46
VCX3A-202ENST00000398729 PARP3Q9Y6F1 533 aa17.9■□□□□ 0.46
VCX3A-202ENST00000398729 C4AP0C0L4 1744 aa17.89■□□□□ 0.46
VCX3A-202ENST00000398729 INTS5Q6P9B9 1019 aaKnown RBP17.88■□□□□ 0.45
VCX3A-202ENST00000398729 VSIG10Q8N0Z9 540 aa17.88■□□□□ 0.45
VCX3A-202ENST00000398729 RBM46Q8TBY0 533 aaKnown RBP17.88■□□□□ 0.45
VCX3A-202ENST00000398729 SRP68Q9UHB9 627 aaKnown RBP17.88■□□□□ 0.45
VCX3A-202ENST00000398729 UBR2Q8IWV8 1755 aa17.88■□□□□ 0.45
VCX3A-202ENST00000398729 CYP19A1P11511 503 aaPredicted RBP17.87■□□□□ 0.45
VCX3A-202ENST00000398729 PIM2Q9P1W9 311 aa17.87■□□□□ 0.45
VCX3A-202ENST00000398729 SIPA1L3O60292 1781 aaPredicted RBP17.86■□□□□ 0.45
VCX3A-202ENST00000398729 DDR1Q08345 913 aa17.86■□□□□ 0.45
VCX3A-202ENST00000398729 FKBP8Q14318 412 aa17.86■□□□□ 0.45
VCX3A-202ENST00000398729 ZNF790Q6PG37 636 aa17.86■□□□□ 0.45
VCX3A-202ENST00000398729 USP42Q9H9J4 1324 aaKnown RBP17.86■□□□□ 0.45
VCX3A-202ENST00000398729 CEMIPQ8WUJ3 1361 aa17.86■□□□□ 0.45
VCX3A-202ENST00000398729 BRCA1P38398 1863 aaKnown RBP17.86■□□□□ 0.45
VCX3A-202ENST00000398729 RTF1Q92541 710 aaKnown RBP17.85■□□□□ 0.45
VCX3A-202ENST00000398729 SOS1Q07889 1333 aaPredicted RBP17.84■□□□□ 0.45
VCX3A-202ENST00000398729 STARD3NLO95772 234 aa17.84■□□□□ 0.45
VCX3A-202ENST00000398729 NEFMP07197 916 aa17.84■□□□□ 0.45
VCX3A-202ENST00000398729 CHRNA5P30532 468 aa17.84■□□□□ 0.45
VCX3A-202ENST00000398729 DALRD3Q5D0E6 543 aaKnown RBP17.84■□□□□ 0.45
VCX3A-202ENST00000398729 COL13A1Q5TAT6 717 aaPredicted RBP17.84■□□□□ 0.45
VCX3A-202ENST00000398729 JMYQ8N9B5 988 aa17.84■□□□□ 0.45
VCX3A-202ENST00000398729 KLRG1Q96E93 195 aa17.84■□□□□ 0.45
VCX3A-202ENST00000398729 RRAGCQ9HB90 399 aa17.84■□□□□ 0.45
VCX3A-202ENST00000398729 HEG1Q9ULI3 1381 aa17.83■□□□□ 0.45
VCX3A-202ENST00000398729 ZPR1O75312 459 aa17.83■□□□□ 0.44
VCX3A-202ENST00000398729 TM4SF1P30408 202 aa17.83■□□□□ 0.44
VCX3A-202ENST00000398729 DDX10Q13206 875 aaKnown RBP17.83■□□□□ 0.44
VCX3A-202ENST00000398729 RALBP1Q15311 655 aa17.83■□□□□ 0.44
VCX3A-202ENST00000398729 ZNF496Q96IT1 587 aaPredicted RBP17.83■□□□□ 0.44
VCX3A-202ENST00000398729 ZBTB1Q9Y2K1 713 aa17.83■□□□□ 0.44
VCX3A-202ENST00000398729 BTBD11A6QL63 1104 aa17.82■□□□□ 0.44
VCX3A-202ENST00000398729 FSTL1Q12841 308 aa17.82■□□□□ 0.44
VCX3A-202ENST00000398729 TEX13AQ9BXU3 409 aaPredicted RBP17.82■□□□□ 0.44
VCX3A-202ENST00000398729 COL15A1P39059 1388 aa17.81■□□□□ 0.44
VCX3A-202ENST00000398729 POLRMTO00411 1230 aaKnown RBP17.81■□□□□ 0.44
VCX3A-202ENST00000398729 HTATSF1O43719 755 aaKnown RBP17.81■□□□□ 0.44
VCX3A-202ENST00000398729 FMNL2Q96PY5 1086 aa17.81■□□□□ 0.44
VCX3A-202ENST00000398729 RNF181Q9P0P0 153 aa17.81■□□□□ 0.44
VCX3A-202ENST00000398729 ARFGEF1Q9Y6D6 1849 aa17.81■□□□□ 0.44
VCX3A-202ENST00000398729 USPL1Q5W0Q7 1092 aa17.8■□□□□ 0.44
VCX3A-202ENST00000398729 MCM10Q7L590 875 aa17.8■□□□□ 0.44
VCX3A-202ENST00000398729 C16orf71Q8IYS4 520 aaPredicted RBP17.8■□□□□ 0.44
VCX3A-202ENST00000398729 CANXP27824 592 aaKnown RBP17.79■□□□□ 0.44
VCX3A-202ENST00000398729 PNNQ9H307 717 aaKnown RBP17.79■□□□□ 0.44
VCX3A-202ENST00000398729 NARFQ9UHQ1 456 aa17.79■□□□□ 0.44
VCX3A-202ENST00000398729 WDR90Q96KV7 1748 aa17.78■□□□□ 0.44
VCX3A-202ENST00000398729 KDM2BQ8NHM5 1336 aa17.78■□□□□ 0.44
VCX3A-202ENST00000398729 KCNQ3O43525 872 aa17.78■□□□□ 0.44
VCX3A-202ENST00000398729 PRELPP51888 382 aa17.78■□□□□ 0.44
VCX3A-202ENST00000398729 DCTN1Q14203 1278 aa17.78■□□□□ 0.44
VCX3A-202ENST00000398729 SBF1O95248 1867 aa17.78■□□□□ 0.44
VCX3A-202ENST00000398729 PLEKHF1Q96S99 279 aa17.77■□□□□ 0.44
VCX3A-202ENST00000398729 A0A087WZG4 1122 aa17.76■□□□□ 0.43
VCX3A-202ENST00000398729 EIF5P55010 431 aaKnown RBP17.76■□□□□ 0.43
VCX3A-202ENST00000398729 MAPK8IP3Q9UPT6 1336 aa17.75■□□□□ 0.43
VCX3A-202ENST00000398729 DLG5Q8TDM6 1919 aa17.75■□□□□ 0.43
VCX3A-202ENST00000398729 RASSF7Q02833 373 aa17.75■□□□□ 0.43
VCX3A-202ENST00000398729 NPM2Q86SE8 214 aaKnown RBP17.75■□□□□ 0.43
VCX3A-202ENST00000398729 IL6STP40189 918 aaPredicted RBP17.74■□□□□ 0.43
VCX3A-202ENST00000398729 NFIXQ14938 502 aa17.74■□□□□ 0.43
VCX3A-202ENST00000398729 TAF7Q15545 349 aaPredicted RBP17.74■□□□□ 0.43
VCX3A-202ENST00000398729 NFE2L2Q16236 605 aa17.74■□□□□ 0.43
VCX3A-202ENST00000398729 BCL2L12Q9HB09 334 aa17.74■□□□□ 0.43
VCX3A-202ENST00000398729 ZNF330Q9Y3S2 320 aaPredicted RBP17.74■□□□□ 0.43
VCX3A-202ENST00000398729 MYBBP1AQ9BQG0 1328 aaKnown RBP17.73■□□□□ 0.43
VCX3A-202ENST00000398729 SNRPA1P09661 255 aaKnown RBP17.73■□□□□ 0.43
VCX3A-202ENST00000398729 SMC1BQ8NDV3 1235 aa17.73■□□□□ 0.43
VCX3A-202ENST00000398729 A1BGP04217 495 aa17.72■□□□□ 0.43
VCX3A-202ENST00000398729 GLTPD2A6NH11 291 aa17.71■□□□□ 0.43
VCX3A-202ENST00000398729 POTECB2RU33 542 aa17.71■□□□□ 0.43
VCX3A-202ENST00000398729 PNISRQ8TF01 805 aaKnown RBP17.71■□□□□ 0.43
VCX3A-202ENST00000398729 USP16Q9Y5T5 823 aa17.71■□□□□ 0.43
VCX3A-202ENST00000398729 AFDNP55196 1824 aaKnown RBP17.7■□□□□ 0.42
VCX3A-202ENST00000398729 SERPINB2P05120 415 aa17.7■□□□□ 0.42
VCX3A-202ENST00000398729 VEGFAP15692 232 aaPredicted RBP17.7■□□□□ 0.42
VCX3A-202ENST00000398729 LMNB1P20700 586 aa17.7■□□□□ 0.42
VCX3A-202ENST00000398729 TBC1D2BQ9UPU7 963 aa17.7■□□□□ 0.42
VCX3A-202ENST00000398729 SCN7AQ01118 1682 aa17.7■□□□□ 0.42
VCX3A-202ENST00000398729 PRAMEF22A3QJZ6 481 aa17.69■□□□□ 0.42
VCX3A-202ENST00000398729 CAPN15O75808 1086 aa17.69■□□□□ 0.42
VCX3A-202ENST00000398729 ZEB1P37275 1124 aaPredicted RBP17.69■□□□□ 0.42
VCX3A-202ENST00000398729 BICDL1Q6ZP65 573 aa17.69■□□□□ 0.42
VCX3A-202ENST00000398729 MIS18AQ9NYP9 233 aa17.69■□□□□ 0.42
VCX3A-202ENST00000398729 NRXN2Q9P2S2 1712 aa17.69■□□□□ 0.42
VCX3A-202ENST00000398729 TNS4Q8IZW8 715 aa17.68■□□□□ 0.42
VCX3A-202ENST00000398729 TTLL6Q8N841 843 aa17.68■□□□□ 0.42
VCX3A-202ENST00000398729 ZC3H4Q9UPT8 1303 aaKnown RBP17.68■□□□□ 0.42
VCX3A-202ENST00000398729 NFKBIEO00221 500 aa17.67■□□□□ 0.42
VCX3A-202ENST00000398729 TBC1D9BQ66K14 1250 aa17.67■□□□□ 0.42
VCX3A-202ENST00000398729 DZIP3Q86Y13 1208 aaKnown RBP17.67■□□□□ 0.42
VCX3A-202ENST00000398729 THUMPD2Q9BTF0 503 aaKnown RBP17.67■□□□□ 0.42
VCX3A-202ENST00000398729 KDM3BQ7LBC6 1761 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms