RNA–Protein interactions for RNA: ENST00000394082.8

SNRPA1-202, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-202ENST00000394082 COL15A1P39059 1388 aa23.58■■□□□ 1.37
SNRPA1-202ENST00000394082 DALRD3Q5D0E6 543 aaKnown RBP23.58■■□□□ 1.37
SNRPA1-202ENST00000394082 USPL1Q5W0Q7 1092 aa23.58■■□□□ 1.37
SNRPA1-202ENST00000394082 GAS2L2Q8NHY3 880 aa23.58■■□□□ 1.37
SNRPA1-202ENST00000394082 ZBTB1Q9Y2K1 713 aa23.56■■□□□ 1.36
SNRPA1-202ENST00000394082 NRXN2Q9P2S2 1712 aa23.56■■□□□ 1.36
SNRPA1-202ENST00000394082 GNAT3A8MTJ3 354 aa23.55■■□□□ 1.36
SNRPA1-202ENST00000394082 STARD3NLO95772 234 aa23.55■■□□□ 1.36
SNRPA1-202ENST00000394082 TTC5Q8N0Z6 440 aa23.55■■□□□ 1.36
SNRPA1-202ENST00000394082 NFIXQ14938 502 aa23.54■■□□□ 1.36
SNRPA1-202ENST00000394082 TEX13AQ9BXU3 409 aaPredicted RBP23.54■■□□□ 1.36
SNRPA1-202ENST00000394082 U2SURPO15042 1029 aaKnown RBP23.53■■□□□ 1.36
SNRPA1-202ENST00000394082 TOMM70O94826 608 aa23.53■■□□□ 1.36
SNRPA1-202ENST00000394082 IL17REQ8NFR9 667 aa23.53■■□□□ 1.36
SNRPA1-202ENST00000394082 EIF5P55010 431 aaKnown RBP23.52■■□□□ 1.36
SNRPA1-202ENST00000394082 TEFQ10587 303 aa23.52■■□□□ 1.36
SNRPA1-202ENST00000394082 ZNF790Q6PG37 636 aa23.52■■□□□ 1.36
SNRPA1-202ENST00000394082 BCL2L12Q9HB09 334 aa23.52■■□□□ 1.36
SNRPA1-202ENST00000394082 CEMIPQ8WUJ3 1361 aa23.52■■□□□ 1.36
SNRPA1-202ENST00000394082 SIPA1L3O60292 1781 aaPredicted RBP23.51■■□□□ 1.35
SNRPA1-202ENST00000394082 A0A087WZG4 1122 aa23.51■■□□□ 1.35
SNRPA1-202ENST00000394082 C9orf131Q5VYM1 1079 aa23.51■■□□□ 1.35
SNRPA1-202ENST00000394082 HEG1Q9ULI3 1381 aa23.51■■□□□ 1.35
SNRPA1-202ENST00000394082 AFDNP55196 1824 aaKnown RBP23.5■■□□□ 1.35
SNRPA1-202ENST00000394082 CHRNA5P30532 468 aa23.5■■□□□ 1.35
SNRPA1-202ENST00000394082 ZNF496Q96IT1 587 aaPredicted RBP23.5■■□□□ 1.35
SNRPA1-202ENST00000394082 SERPINB2P05120 415 aa23.49■■□□□ 1.35
SNRPA1-202ENST00000394082 CFAP53Q96M91 514 aa23.49■■□□□ 1.35
SNRPA1-202ENST00000394082 CANXP27824 592 aaKnown RBP23.48■■□□□ 1.35
SNRPA1-202ENST00000394082 ZC3H4Q9UPT8 1303 aaKnown RBP23.48■■□□□ 1.35
SNRPA1-202ENST00000394082 DLEC1Q9Y238 1755 aa23.47■■□□□ 1.35
SNRPA1-202ENST00000394082 IL6STP40189 918 aaPredicted RBP23.46■■□□□ 1.35
SNRPA1-202ENST00000394082 APLP1P51693 650 aa23.46■■□□□ 1.35
SNRPA1-202ENST00000394082 KDM2BQ8NHM5 1336 aa23.46■■□□□ 1.35
SNRPA1-202ENST00000394082 FMNL2Q96PY5 1086 aa23.46■■□□□ 1.35
SNRPA1-202ENST00000394082 RSPH6AQ9H0K4 717 aa23.46■■□□□ 1.35
SNRPA1-202ENST00000394082 PDZRN3Q9UPQ7 1066 aa23.46■■□□□ 1.35
SNRPA1-202ENST00000394082 NUDCQ9Y266 331 aa23.46■■□□□ 1.35
SNRPA1-202ENST00000394082 SBF1O95248 1867 aa23.45■■□□□ 1.35
SNRPA1-202ENST00000394082 NMRK2Q9NPI5 230 aa23.45■■□□□ 1.34
SNRPA1-202ENST00000394082 RBM46Q8TBY0 533 aaKnown RBP23.44■■□□□ 1.34
SNRPA1-202ENST00000394082 PHACTR3Q96KR7 559 aa23.44■■□□□ 1.34
SNRPA1-202ENST00000394082 RNF181Q9P0P0 153 aa23.44■■□□□ 1.34
SNRPA1-202ENST00000394082 PRKAR2BP31323 418 aa23.43■■□□□ 1.34
SNRPA1-202ENST00000394082 TTLL6Q8N841 843 aa23.43■■□□□ 1.34
SNRPA1-202ENST00000394082 SCN7AQ01118 1682 aa23.42■■□□□ 1.34
SNRPA1-202ENST00000394082 H0YIN7 160 aa23.42■■□□□ 1.34
SNRPA1-202ENST00000394082 BTBD11A6QL63 1104 aa23.41■■□□□ 1.34
SNRPA1-202ENST00000394082 C2CD5Q86YS7 1000 aa23.4■■□□□ 1.34
SNRPA1-202ENST00000394082 BRIP1Q9BX63 1249 aa23.4■■□□□ 1.34
SNRPA1-202ENST00000394082 CARMIL3Q8ND23 1372 aa23.4■■□□□ 1.34
SNRPA1-202ENST00000394082 LMNB1P20700 586 aa23.39■■□□□ 1.33
SNRPA1-202ENST00000394082 PPP2R1AP30153 589 aa23.39■■□□□ 1.33
SNRPA1-202ENST00000394082 FSTL1Q12841 308 aa23.39■■□□□ 1.33
SNRPA1-202ENST00000394082 CNGB1Q14028 1251 aaPredicted RBP23.39■■□□□ 1.33
SNRPA1-202ENST00000394082 TBC1D9BQ66K14 1250 aa23.39■■□□□ 1.33
SNRPA1-202ENST00000394082 TNRC6CQ9HCJ0 1690 aaKnown RBP23.38■■□□□ 1.33
SNRPA1-202ENST00000394082 HTATSF1O43719 755 aaKnown RBP23.38■■□□□ 1.33
SNRPA1-202ENST00000394082 PDE6BP35913 854 aa23.38■■□□□ 1.33
SNRPA1-202ENST00000394082 NPM2Q86SE8 214 aaKnown RBP23.38■■□□□ 1.33
SNRPA1-202ENST00000394082 C16orf71Q8IYS4 520 aaPredicted RBP23.38■■□□□ 1.33
SNRPA1-202ENST00000394082 TBC1D2BQ9UPU7 963 aa23.37■■□□□ 1.33
SNRPA1-202ENST00000394082 RGL2O15211 777 aa23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 CAMTA2O94983 1202 aa23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 A1BGP04217 495 aa23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 U2AF1L5P0DN76 240 aaPredicted RBP23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 U2AF1Q01081 240 aaKnown RBP eCLIP23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 BICDL1Q6ZP65 573 aa23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 DNAJC5GQ8N7S2 189 aa23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 RTF1Q92541 710 aaKnown RBP23.36■■□□□ 1.33
SNRPA1-202ENST00000394082 IFFO2Q5TF58 517 aa23.35■■□□□ 1.33
SNRPA1-202ENST00000394082 PRR5LQ6MZQ0 368 aa23.35■■□□□ 1.33
SNRPA1-202ENST00000394082 CLEC4GQ6UXB4 293 aa23.35■■□□□ 1.33
SNRPA1-202ENST00000394082 SETDB2Q96T68 719 aa23.35■■□□□ 1.33
SNRPA1-202ENST00000394082 ANKRD31Q8N7Z5 1873 aa23.34■■□□□ 1.33
SNRPA1-202ENST00000394082 KCNQ3O43525 872 aa23.34■■□□□ 1.33
SNRPA1-202ENST00000394082 SNRPA1P09661 255 aaKnown RBP23.34■■□□□ 1.33
SNRPA1-202ENST00000394082 RASSF7Q02833 373 aa23.34■■□□□ 1.33
SNRPA1-202ENST00000394082 BCORQ6W2J9 1755 aa23.33■■□□□ 1.33
SNRPA1-202ENST00000394082 GLTPD2A6NH11 291 aa23.33■■□□□ 1.33
SNRPA1-202ENST00000394082 RRAGCQ9HB90 399 aa23.33■■□□□ 1.33
SNRPA1-202ENST00000394082 ZNF330Q9Y3S2 320 aaPredicted RBP23.33■■□□□ 1.33
SNRPA1-202ENST00000394082 USP16Q9Y5T5 823 aa23.33■■□□□ 1.33
SNRPA1-202ENST00000394082 NFKBIEO00221 500 aa23.32■■□□□ 1.32
SNRPA1-202ENST00000394082 PRELPP51888 382 aa23.32■■□□□ 1.32
SNRPA1-202ENST00000394082 DZIP3Q86Y13 1208 aaKnown RBP23.32■■□□□ 1.32
SNRPA1-202ENST00000394082 CNBD1Q8NA66 436 aa23.31■■□□□ 1.32
SNRPA1-202ENST00000394082 MCM10Q7L590 875 aa23.3■■□□□ 1.32
SNRPA1-202ENST00000394082 WDR90Q96KV7 1748 aa23.3■■□□□ 1.32
SNRPA1-202ENST00000394082 LTBP3Q9NS15 1303 aa23.3■■□□□ 1.32
SNRPA1-202ENST00000394082 VEGFAP15692 232 aaPredicted RBP23.29■■□□□ 1.32
SNRPA1-202ENST00000394082 ST5P78524 1137 aa23.29■■□□□ 1.32
SNRPA1-202ENST00000394082 STYK1Q6J9G0 422 aa23.29■■□□□ 1.32
SNRPA1-202ENST00000394082 SMC1BQ8NDV3 1235 aa23.29■■□□□ 1.32
SNRPA1-202ENST00000394082 ZNF622Q969S3 477 aaKnown RBP eCLIP23.29■■□□□ 1.321e-7■□□□□ 10.2
SNRPA1-202ENST00000394082 ZNF652Q9Y2D9 606 aa23.29■■□□□ 1.32
SNRPA1-202ENST00000394082 COL11A2P13942 1736 aaPredicted RBP23.28■■□□□ 1.32
SNRPA1-202ENST00000394082 TAF7Q15545 349 aaPredicted RBP23.28■■□□□ 1.32
SNRPA1-202ENST00000394082 CNKSR1Q969H4 720 aa23.28■■□□□ 1.32
SNRPA1-202ENST00000394082 FER1L6Q2WGJ9 1857 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms