RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 CHPF2Q9P2E5 772 aa15.72■□□□□ 0.11
CIITA-202ENST00000381835 C5P01031 1676 aa15.71■□□□□ 0.11
CIITA-202ENST00000381835 PRIM1P49642 420 aaKnown RBP15.71■□□□□ 0.11
CIITA-202ENST00000381835 MVPQ14764 893 aaKnown RBP15.71■□□□□ 0.11
CIITA-202ENST00000381835 ACSBG1Q96GR2 724 aa15.71■□□□□ 0.11
CIITA-202ENST00000381835 CHMP4AQ9BY43 222 aa15.71■□□□□ 0.11
CIITA-202ENST00000381835 API5Q9BZZ5 524 aaKnown RBP15.71■□□□□ 0.11
CIITA-202ENST00000381835 ATRNO75882 1429 aa15.71■□□□□ 0.11
CIITA-202ENST00000381835 SNRPA1P09661 255 aaKnown RBP15.71■□□□□ 0.1
CIITA-202ENST00000381835 ANXA1P04083 346 aa15.7■□□□□ 0.1
CIITA-202ENST00000381835 ASAP1Q9ULH1 1129 aa15.7■□□□□ 0.1
CIITA-202ENST00000381835 PTPRCP08575 1304 aa15.7■□□□□ 0.1
CIITA-202ENST00000381835 PAPPAQ13219 1627 aa15.7■□□□□ 0.1
CIITA-202ENST00000381835 FLIIQ13045 1269 aa15.69■□□□□ 0.1
CIITA-202ENST00000381835 PHAXQ9H814 394 aaKnown RBP15.69■□□□□ 0.1
CIITA-202ENST00000381835 USP16Q9Y5T5 823 aa15.69■□□□□ 0.1
CIITA-202ENST00000381835 UBR2Q8IWV8 1755 aa15.69■□□□□ 0.1
CIITA-202ENST00000381835 BCL9O00512 1426 aa15.69■□□□□ 0.1
CIITA-202ENST00000381835 SKAP1Q86WV1 359 aa15.69■□□□□ 0.1
CIITA-202ENST00000381835 FBXO41Q8TF61 875 aa15.69■□□□□ 0.1
CIITA-202ENST00000381835 DDRGK1Q96HY6 314 aa15.69■□□□□ 0.1
CIITA-202ENST00000381835 FKBP5Q13451 457 aaPredicted RBP15.68■□□□□ 0.1
CIITA-202ENST00000381835 DBF4Q9UBU7 674 aaPredicted RBP15.68■□□□□ 0.1
CIITA-202ENST00000381835 THSD7AQ9UPZ6 1657 aa15.68■□□□□ 0.1
CIITA-202ENST00000381835 ABCC4O15439 1325 aa15.68■□□□□ 0.1
CIITA-202ENST00000381835 KCPQ6ZWJ8 1503 aa15.68■□□□□ 0.1
CIITA-202ENST00000381835 ATG3Q9NT62 314 aa15.67■□□□□ 0.1
CIITA-202ENST00000381835 DDX19BQ9UMR2 479 aa15.67■□□□□ 0.1
CIITA-202ENST00000381835 F6X3S4 739 aa15.67■□□□□ 0.1
CIITA-202ENST00000381835 PROSER3Q2NL68 480 aa15.67■□□□□ 0.1
CIITA-202ENST00000381835 RGS12O14924 1447 aa15.67■□□□□ 0.1
CIITA-202ENST00000381835 FAM182BQ5T319 152 aa15.66■□□□□ 0.1
CIITA-202ENST00000381835 SLC4A10Q6U841 1118 aa15.66■□□□□ 0.1
CIITA-202ENST00000381835 RBM42Q9BTD8 480 aaKnown RBP15.66■□□□□ 0.1
CIITA-202ENST00000381835 SEPT12Q8IYM1 358 aa15.66■□□□□ 0.1
CIITA-202ENST00000381835 MYL6BP14649 208 aa15.65■□□□□ 0.1
CIITA-202ENST00000381835 PIP4K2AP48426 406 aaPredicted RBP15.65■□□□□ 0.1
CIITA-202ENST00000381835 KCNQ2O43526 872 aa15.65■□□□□ 0.1
CIITA-202ENST00000381835 ONECUT3O60422 494 aaPredicted RBP15.65■□□□□ 0.1
CIITA-202ENST00000381835 DDX21Q9NR30 783 aaKnown RBP eCLIP15.65■□□□□ 0.1
CIITA-202ENST00000381835 LAMB4A4D0S4 1761 aa15.64■□□□□ 0.09
CIITA-202ENST00000381835 PDIA6Q15084 440 aa15.64■□□□□ 0.09
CIITA-202ENST00000381835 ZNF772Q68DY9 489 aaPredicted RBP15.63■□□□□ 0.09
CIITA-202ENST00000381835 HYPKQ9NX55 129 aa15.63■□□□□ 0.09
CIITA-202ENST00000381835 CENPQQ7L2Z9 268 aaPredicted RBP15.63■□□□□ 0.09
CIITA-202ENST00000381835 KDM2BQ8NHM5 1336 aa15.63■□□□□ 0.09
CIITA-202ENST00000381835 AIMP1Q12904 312 aaKnown RBP15.62■□□□□ 0.09
CIITA-202ENST00000381835 INTS3Q68E01 1043 aaKnown RBP15.62■□□□□ 0.09
CIITA-202ENST00000381835 PI4KAP2A4QPH2 592 aa15.61■□□□□ 0.09
CIITA-202ENST00000381835 ZBTB7BO15156 539 aaPredicted RBP15.61■□□□□ 0.09
CIITA-202ENST00000381835 AAMPQ13685 434 aa15.61■□□□□ 0.09
CIITA-202ENST00000381835 PI4KAP1Q8N8J0 262 aa15.61■□□□□ 0.09
CIITA-202ENST00000381835 A1BGP04217 495 aa15.61■□□□□ 0.09
CIITA-202ENST00000381835 DNAJC10Q8IXB1 793 aa15.61■□□□□ 0.09
CIITA-202ENST00000381835 VSIG10Q8N0Z9 540 aa15.61■□□□□ 0.09
CIITA-202ENST00000381835 ZBTB40Q9NUA8 1239 aa15.61■□□□□ 0.09
CIITA-202ENST00000381835 EP400Q96L91 3159 aa15.6■□□□□ 0.09
CIITA-202ENST00000381835 SLC4A9Q96Q91 983 aa15.6■□□□□ 0.09
CIITA-202ENST00000381835 DAXXQ9UER7 740 aaPredicted RBP15.6■□□□□ 0.09
CIITA-202ENST00000381835 PCDHB15Q9Y5E8 787 aa15.6■□□□□ 0.09
CIITA-202ENST00000381835 CCT4P50991 539 aaKnown RBP15.6■□□□□ 0.09
CIITA-202ENST00000381835 COPS6Q7L5N1 327 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 PTF1AQ7RTS3 328 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 XAGE3Q8WTP9 111 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 TEX13AQ9BXU3 409 aaPredicted RBP15.59■□□□□ 0.09
CIITA-202ENST00000381835 BRWD3Q6RI45 1802 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 NBPF26B4DH59 902 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 RBM6P78332 1123 aaKnown RBP15.59■□□□□ 0.09
CIITA-202ENST00000381835 NBPF14Q5TI25 921 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 NBPF10Q6P3W6 841 aaKnown RBP15.59■□□□□ 0.09
CIITA-202ENST00000381835 NBPF15Q8N660 670 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 DNAAF4Q8WXU2 420 aa15.59■□□□□ 0.09
CIITA-202ENST00000381835 CHMP4BQ9H444 224 aaKnown RBP15.59■□□□□ 0.09
CIITA-202ENST00000381835 ADCY9O60503 1353 aa15.58■□□□□ 0.08
CIITA-202ENST00000381835 DDX58O95786 925 aaKnown RBP15.58■□□□□ 0.08
CIITA-202ENST00000381835 C1orf115Q9H7X2 142 aa15.58■□□□□ 0.08
CIITA-202ENST00000381835 MAP3K2Q9Y2U5 619 aa15.58■□□□□ 0.08
CIITA-202ENST00000381835 STARD3NLO95772 234 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 FAM161AQ3B820 660 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 KSR2Q6VAB6 950 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 LRP10Q7Z4F1 713 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 ERBB4Q15303 1308 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 PALLDQ8WX93 1383 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 IL27Q8NEV9 243 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 SBF2Q86WG5 1849 aa15.57■□□□□ 0.08
CIITA-202ENST00000381835 LOC102724428A0A0B4J2F2 783 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 IGHDP01880 384 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 ATP6V1AP38606 617 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 SIK1P57059 783 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 KRT27Q7Z3Y8 459 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 RIC3Q7Z5B4 369 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 SMARCC1Q92922 1105 aaPredicted RBP15.56■□□□□ 0.08
CIITA-202ENST00000381835 MEIS3Q99687 375 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 ZNF330Q9Y3S2 320 aaPredicted RBP15.56■□□□□ 0.08
CIITA-202ENST00000381835 SLC4A3P48751 1232 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 PXDNLA1KZ92 1463 aa15.56■□□□□ 0.08
CIITA-202ENST00000381835 BTAF1O14981 1849 aa15.55■□□□□ 0.08
CIITA-202ENST00000381835 SRCIN1Q9C0H9 1055 aa15.55■□□□□ 0.08
CIITA-202ENST00000381835 NHSQ6T4R5 1651 aa15.55■□□□□ 0.08
CIITA-202ENST00000381835 TJP1Q07157 1748 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms