RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 SYAP1Q96A49 352 aaPredicted RBP16.76■□□□□ 0.27
SDC1-202ENST00000381150 DCTPP1Q9H773 170 aa16.76■□□□□ 0.27
SDC1-202ENST00000381150 ZNF142P52746 1687 aaPredicted RBP16.76■□□□□ 0.27
SDC1-202ENST00000381150 NUTM2GQ5VZR2 741 aa16.76■□□□□ 0.27
SDC1-202ENST00000381150 TTC22Q5TAA0 569 aa16.75■□□□□ 0.27
SDC1-202ENST00000381150 MBD3O95983 291 aa16.75■□□□□ 0.27
SDC1-202ENST00000381150 CHAF1AQ13111 956 aaPredicted RBP16.75■□□□□ 0.27
SDC1-202ENST00000381150 ZNF771Q7L3S4 317 aaPredicted RBP16.75■□□□□ 0.27
SDC1-202ENST00000381150 TMX3Q96JJ7 454 aa16.75■□□□□ 0.27
SDC1-202ENST00000381150 HTATSF1O43719 755 aaKnown RBP16.74■□□□□ 0.27
SDC1-202ENST00000381150 ADCY5O95622 1261 aa16.74■□□□□ 0.27
SDC1-202ENST00000381150 REC8O95072 547 aa16.74■□□□□ 0.27
SDC1-202ENST00000381150 ABTB2Q8N961 1025 aa16.74■□□□□ 0.27
SDC1-202ENST00000381150 SLC4A2P04920 1241 aa16.74■□□□□ 0.27
SDC1-202ENST00000381150 ANKRD44Q8N8A2 993 aa16.74■□□□□ 0.27
SDC1-202ENST00000381150 TRHP20396 242 aaPredicted RBP16.73■□□□□ 0.27
SDC1-202ENST00000381150 U2AF2P26368 475 aaKnown RBP eCLIP16.73■□□□□ 0.27
SDC1-202ENST00000381150 ATP2B3Q16720 1220 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 PDCL2Q8N4E4 241 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 FIBPO43427 364 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 MCM5P33992 734 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 G2E3Q7L622 706 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 ANKLE2Q86XL3 938 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 MYRIPQ8NFW9 859 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 RTF1Q92541 710 aaKnown RBP16.73■□□□□ 0.27
SDC1-202ENST00000381150 TSPYL4Q9UJ04 414 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 RTL1A6NKG5 1358 aa16.73■□□□□ 0.27
SDC1-202ENST00000381150 IBTKQ9P2D0 1353 aaPredicted RBP16.73■□□□□ 0.27
SDC1-202ENST00000381150 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.72■□□□□ 0.27
SDC1-202ENST00000381150 LTN1O94822 1766 aa16.72■□□□□ 0.27
SDC1-202ENST00000381150 MSH6P52701 1360 aa16.72■□□□□ 0.27
SDC1-202ENST00000381150 PHF8Q9UPP1 1060 aa16.72■□□□□ 0.27
SDC1-202ENST00000381150 ZSCAN20P17040 1043 aaPredicted RBP16.71■□□□□ 0.27
SDC1-202ENST00000381150 CEP85Q6P2H3 762 aa16.71■□□□□ 0.27
SDC1-202ENST00000381150 DRC7Q8IY82 874 aa16.71■□□□□ 0.27
SDC1-202ENST00000381150 IL17REQ8NFR9 667 aa16.71■□□□□ 0.27
SDC1-202ENST00000381150 BBXQ8WY36 941 aaPredicted RBP16.71■□□□□ 0.27
SDC1-202ENST00000381150 NFAT5O94916 1531 aa16.71■□□□□ 0.27
SDC1-202ENST00000381150 DMTNQ08495 405 aa16.71■□□□□ 0.27
SDC1-202ENST00000381150 RPAP2Q8IXW5 612 aaPredicted RBP16.71■□□□□ 0.27
SDC1-202ENST00000381150 ADAMTSL3P82987 1691 aa16.71■□□□□ 0.27
SDC1-202ENST00000381150 RBM33Q96EV2 1170 aaKnown RBP16.71■□□□□ 0.26
SDC1-202ENST00000381150 MEIS3Q99687 375 aa16.71■□□□□ 0.26
SDC1-202ENST00000381150 CGNQ9P2M7 1197 aaKnown RBP16.71■□□□□ 0.26
SDC1-202ENST00000381150 GNAT3A8MTJ3 354 aa16.7■□□□□ 0.26
SDC1-202ENST00000381150 ERC2O15083 957 aa16.7■□□□□ 0.26
SDC1-202ENST00000381150 USP48Q86UV5 1035 aa16.7■□□□□ 0.26
SDC1-202ENST00000381150 HMGN5P82970 282 aaKnown RBP16.7■□□□□ 0.26
SDC1-202ENST00000381150 ZNF710Q8N1W2 664 aa16.7■□□□□ 0.26
SDC1-202ENST00000381150 CYP2E1P05181 493 aaPredicted RBP16.69■□□□□ 0.26
SDC1-202ENST00000381150 ZNF592Q92610 1267 aa16.69■□□□□ 0.26
SDC1-202ENST00000381150 BCL2L12Q9HB09 334 aa16.69■□□□□ 0.26
SDC1-202ENST00000381150 CLEC17AQ6ZS10 378 aa16.69■□□□□ 0.26
SDC1-202ENST00000381150 PHF14O94880 888 aa16.69■□□□□ 0.26
SDC1-202ENST00000381150 EXOC6BQ9Y2D4 811 aa16.69■□□□□ 0.26
SDC1-202ENST00000381150 SETD1BQ9UPS6 1966 aaKnown RBP16.68■□□□□ 0.26
SDC1-202ENST00000381150 GIMAP6Q6P9H5 292 aa16.68■□□□□ 0.26
SDC1-202ENST00000381150 ADGRL3Q9HAR2 1447 aa16.68■□□□□ 0.26
SDC1-202ENST00000381150 FAM208AQ9UK61 1670 aaKnown RBP16.68■□□□□ 0.26
SDC1-202ENST00000381150 MAP4K4O95819 1239 aaPredicted RBP16.67■□□□□ 0.26
SDC1-202ENST00000381150 CACNA1FO60840 1977 aa16.67■□□□□ 0.26
SDC1-202ENST00000381150 IP6K1Q92551 441 aa16.67■□□□□ 0.26
SDC1-202ENST00000381150 PHRF1Q9P1Y6 1649 aaKnown RBP16.67■□□□□ 0.26
SDC1-202ENST00000381150 MAP3K5Q99683 1374 aa16.67■□□□□ 0.26
SDC1-202ENST00000381150 F6X3S4 739 aa16.67■□□□□ 0.26
SDC1-202ENST00000381150 MCCP23508 829 aa16.67■□□□□ 0.26
SDC1-202ENST00000381150 CNPY2Q9Y2B0 182 aa16.67■□□□□ 0.26
SDC1-202ENST00000381150 PALD1Q9ULE6 856 aa16.66■□□□□ 0.26
SDC1-202ENST00000381150 VGLL3A8MV65 326 aa16.66■□□□□ 0.26
SDC1-202ENST00000381150 PIBF1Q8WXW3 757 aa16.66■□□□□ 0.26
SDC1-202ENST00000381150 BABAM1Q9NWV8 329 aa16.66■□□□□ 0.26
SDC1-202ENST00000381150 NECTIN2Q92692 538 aa16.65■□□□□ 0.26
SDC1-202ENST00000381150 LTV1Q96GA3 475 aaPredicted RBP16.65■□□□□ 0.26
SDC1-202ENST00000381150 RIOK3O14730 519 aaKnown RBP16.65■□□□□ 0.26
SDC1-202ENST00000381150 NPHP1O15259 732 aa16.65■□□□□ 0.26
SDC1-202ENST00000381150 RGPD2P0DJD1 1756 aa16.64■□□□□ 0.26
SDC1-202ENST00000381150 CDK11BP21127 795 aaKnown RBP16.64■□□□□ 0.25
SDC1-202ENST00000381150 NBPF6Q5VWK0 638 aa16.64■□□□□ 0.25
SDC1-202ENST00000381150 USHBP1Q8N6Y0 703 aa16.64■□□□□ 0.25
SDC1-202ENST00000381150 PRIMPOLQ96LW4 560 aa16.64■□□□□ 0.25
SDC1-202ENST00000381150 NBPF4Q96M43 638 aa16.64■□□□□ 0.25
SDC1-202ENST00000381150 CEMIPQ8WUJ3 1361 aa16.64■□□□□ 0.25
SDC1-202ENST00000381150 ZBTB22O15209 634 aa16.64■□□□□ 0.25
SDC1-202ENST00000381150 CCT4P50991 539 aaKnown RBP16.64■□□□□ 0.25
SDC1-202ENST00000381150 TAF7Q15545 349 aaPredicted RBP16.64■□□□□ 0.25
SDC1-202ENST00000381150 DDX54Q8TDD1 881 aaKnown RBP16.64■□□□□ 0.25
SDC1-202ENST00000381150 C16orf45Q96MC5 204 aaPredicted RBP16.64■□□□□ 0.25
SDC1-202ENST00000381150 MED1Q15648 1581 aaPredicted RBP16.63■□□□□ 0.25
SDC1-202ENST00000381150 N4BP2Q86UW6 1770 aaPredicted RBP16.63■□□□□ 0.25
SDC1-202ENST00000381150 SOS1Q07889 1333 aaPredicted RBP16.63■□□□□ 0.25
SDC1-202ENST00000381150 CAMK4Q16566 473 aa16.62■□□□□ 0.25
SDC1-202ENST00000381150 PYCARDQ9ULZ3 195 aa16.62■□□□□ 0.25
SDC1-202ENST00000381150 FLIIQ13045 1269 aa16.62■□□□□ 0.25
SDC1-202ENST00000381150 ESCO1Q5FWF5 840 aa16.62■□□□□ 0.25
SDC1-202ENST00000381150 CCDC30Q5VVM6 783 aa16.62■□□□□ 0.25
SDC1-202ENST00000381150 BRD1O95696 1058 aa16.61■□□□□ 0.25
SDC1-202ENST00000381150 C14orf37Q86TY3 774 aa16.61■□□□□ 0.25
SDC1-202ENST00000381150 NPHP4O75161 1426 aaPredicted RBP16.61■□□□□ 0.25
SDC1-202ENST00000381150 VPS37CA5D8V6 355 aaPredicted RBP16.61■□□□□ 0.25
SDC1-202ENST00000381150 PSME1Q06323 249 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms