RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 PUS7Q96PZ0 661 aaKnown RBP15.93■□□□□ 0.14
COL4A1-201ENST00000375820 KIF5CO60282 957 aa15.93■□□□□ 0.14
COL4A1-201ENST00000375820 C16orf45Q96MC5 204 aaPredicted RBP15.93■□□□□ 0.14
COL4A1-201ENST00000375820 TMOD3Q9NYL9 352 aa15.93■□□□□ 0.14
COL4A1-201ENST00000375820 SLC12A7Q9Y666 1083 aa15.93■□□□□ 0.14
COL4A1-201ENST00000375820 NLRP5P59047 1200 aa15.93■□□□□ 0.14
COL4A1-201ENST00000375820 U3KPZ7 1027 aaPredicted RBP15.93■□□□□ 0.14
COL4A1-201ENST00000375820 ERBINQ96RT1 1412 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 USP25Q9UHP3 1055 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 HAND2P61296 217 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 LARP1Q6PKG0 1096 aaKnown RBP15.92■□□□□ 0.14
COL4A1-201ENST00000375820 ZNF444Q8N0Y2 327 aaPredicted RBP15.92■□□□□ 0.14
COL4A1-201ENST00000375820 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.92■□□□□ 0.14
COL4A1-201ENST00000375820 LRRC9Q6ZRR7 1453 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 TERF1P54274 439 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 TAF7Q15545 349 aaPredicted RBP15.92■□□□□ 0.14
COL4A1-201ENST00000375820 PPP4R3AQ6IN85 833 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 ZSWIM4Q9H7M6 989 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 CFTRP13569 1480 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 RAPGEF3O95398 923 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 COMMD10Q9Y6G5 202 aa15.92■□□□□ 0.14
COL4A1-201ENST00000375820 GOLGA8BA8MQT2 603 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 TCERG1LQ5VWI1 586 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 PUF60Q9UHX1 559 aaKnown RBP15.91■□□□□ 0.14
COL4A1-201ENST00000375820 NSD3Q9BZ95 1437 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 TMCO5BA8MYB1 307 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 NFE2L2Q16236 605 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 THEMISQ8N1K5 641 aaPredicted RBP15.91■□□□□ 0.14
COL4A1-201ENST00000375820 SNRKQ9NRH2 765 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 CNNM3Q8NE01 707 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 SHTN1A0MZ66 631 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 CTNNA2P26232 953 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 KIF1BPQ96EK5 621 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 RAB11FIP3O75154 756 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 INCENPQ9NQS7 918 aa15.91■□□□□ 0.14
COL4A1-201ENST00000375820 SSRP1Q08945 709 aaKnown RBP15.9■□□□□ 0.14
COL4A1-201ENST00000375820 GIMAP7Q8NHV1 300 aa15.9■□□□□ 0.14
COL4A1-201ENST00000375820 RBM27Q9P2N5 1060 aaKnown RBP15.9■□□□□ 0.14
COL4A1-201ENST00000375820 TRMT112Q9UI30 125 aaKnown RBP15.9■□□□□ 0.14
COL4A1-201ENST00000375820 GOLGA8AA7E2F4 631 aa15.9■□□□□ 0.14
COL4A1-201ENST00000375820 IFIT3O14879 490 aaKnown RBP15.9■□□□□ 0.14
COL4A1-201ENST00000375820 HSP90AA4PQ58FG1 418 aa15.9■□□□□ 0.14
COL4A1-201ENST00000375820 ANKRD30BQ9BXX2 1392 aa15.9■□□□□ 0.14
COL4A1-201ENST00000375820 SCAPERQ9BY12 1400 aa15.9■□□□□ 0.14
COL4A1-201ENST00000375820 ZNF213O14771 459 aa15.9■□□□□ 0.14
COL4A1-201ENST00000375820 HLTFQ14527 1009 aaKnown RBP eCLIP15.9■□□□□ 0.14
COL4A1-201ENST00000375820 TMC6Q7Z403 805 aa15.9■□□□□ 0.14
COL4A1-201ENST00000375820 CTCFLQ8NI51 663 aaPredicted RBP15.9■□□□□ 0.14
COL4A1-201ENST00000375820 ZBTB3Q9H5J0 574 aa15.89■□□□□ 0.13
COL4A1-201ENST00000375820 TRIM21P19474 475 aaKnown RBP15.89■□□□□ 0.13
COL4A1-201ENST00000375820 CETN2P41208 172 aa15.89■□□□□ 0.13
COL4A1-201ENST00000375820 ANO10Q9NW15 660 aa15.89■□□□□ 0.13
COL4A1-201ENST00000375820 CCDC183Q5T5S1 534 aa15.89■□□□□ 0.13
COL4A1-201ENST00000375820 NUDT16Q96DE0 195 aaKnown RBP15.89■□□□□ 0.13
COL4A1-201ENST00000375820 CA8P35219 290 aa15.89■□□□□ 0.13
COL4A1-201ENST00000375820 FSIP1Q8NA03 581 aa15.89■□□□□ 0.13
COL4A1-201ENST00000375820 WDR70Q9NW82 654 aa15.89■□□□□ 0.13
COL4A1-201ENST00000375820 DRC1Q96MC2 740 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 AKAP2Q9Y2D5 859 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 IGF1RP08069 1367 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 MTIF2P46199 727 aaKnown RBP15.88■□□□□ 0.13
COL4A1-201ENST00000375820 FAM107BQ9H098 131 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 RNF216Q9NWF9 866 aaPredicted RBP15.88■□□□□ 0.13
COL4A1-201ENST00000375820 IFIT5Q13325 482 aaKnown RBP15.88■□□□□ 0.13
COL4A1-201ENST00000375820 CUL5Q93034 780 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 ATP2C2O75185 946 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 IDEP14735 1019 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 RPAP2Q8IXW5 612 aaPredicted RBP15.88■□□□□ 0.13
COL4A1-201ENST00000375820 WWC3Q9ULE0 1092 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 SAMM50Q9Y512 469 aa15.88■□□□□ 0.13
COL4A1-201ENST00000375820 SPECC1Q5M775 1068 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 TMEM87AQ8NBN3 555 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 CEP63Q96MT8 703 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 ATP5J2-PTCD1G3V325 749 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 ZSCAN12O43309 604 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 CCDC194A0A1B0GVG4 234 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 GOLIM4O00461 696 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 PLCD3Q8N3E9 789 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 MYO1BO43795 1136 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 GLRX3O76003 335 aaKnown RBP15.87■□□□□ 0.13
COL4A1-201ENST00000375820 NOP2P46087 812 aaKnown RBP15.87■□□□□ 0.13
COL4A1-201ENST00000375820 RPGRQ92834 1020 aaKnown RBP15.87■□□□□ 0.13
COL4A1-201ENST00000375820 STAC3Q96MF2 364 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 ATAD2BQ9ULI0 1458 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 FERMT2Q96AC1 680 aa15.87■□□□□ 0.13
COL4A1-201ENST00000375820 GJB2P29033 226 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 ANKLE2Q86XL3 938 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 SSH1Q8WYL5 1049 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 MAP3K12Q12852 859 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 C6orf229H3BNL8 230 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 SLFN5Q08AF3 891 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 NME9Q86XW9 330 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 PRC1O43663 620 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 ZSCAN30Q86W11 494 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 KIF18AQ8NI77 898 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 KIF21BO75037 1637 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 FCHSD2O94868 740 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 TMEM266Q2M3C6 531 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 HOOK3Q86VS8 718 aa15.86■□□□□ 0.13
COL4A1-201ENST00000375820 ZNF652Q9Y2D9 606 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms