RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 CPLX2Q6PUV4 134 aaKnown RBP11.9□□□□□ -0.5
CD28-202ENST00000374481 RAI14Q9P0K7 980 aa11.9□□□□□ -0.5
CD28-202ENST00000374481 CFAP43Q8NDM7 1665 aa11.9□□□□□ -0.5
CD28-202ENST00000374481 GJB2P29033 226 aa11.9□□□□□ -0.5
CD28-202ENST00000374481 HSPA4P34932 840 aa11.9□□□□□ -0.5
CD28-202ENST00000374481 INTS4Q96HW7 963 aaKnown RBP11.9□□□□□ -0.5
CD28-202ENST00000374481 RSRC1Q96IZ7 334 aaKnown RBP11.9□□□□□ -0.5
CD28-202ENST00000374481 SPINK5Q9NQ38 1064 aaPredicted RBP11.9□□□□□ -0.5
CD28-202ENST00000374481 CCDC9Q9Y3X0 531 aaKnown RBP11.9□□□□□ -0.5
CD28-202ENST00000374481 F13A1P00488 732 aa11.9□□□□□ -0.5
CD28-202ENST00000374481 ZNF75DP51815 510 aa11.9□□□□□ -0.5
CD28-202ENST00000374481 PPP2R3AQ06190 1150 aa11.9□□□□□ -0.5
CD28-202ENST00000374481 SH2B1Q9NRF2 756 aaPredicted RBP11.9□□□□□ -0.5
CD28-202ENST00000374481 HNRNPMP52272 730 aaKnown RBP eCLIP11.9□□□□□ -0.51
CD28-202ENST00000374481 MCTP2Q6DN12 878 aa11.9□□□□□ -0.51
CD28-202ENST00000374481 ANKRD18AQ8IVF6 992 aa11.9□□□□□ -0.51
CD28-202ENST00000374481 ZNF428Q96B54 188 aa11.9□□□□□ -0.51
CD28-202ENST00000374481 SCLT1Q96NL6 688 aa11.9□□□□□ -0.51
CD28-202ENST00000374481 ACTN2P35609 894 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 FBXO38Q6PIJ6 1188 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 RBM33Q96EV2 1170 aaKnown RBP11.89□□□□□ -0.51
CD28-202ENST00000374481 STK26Q9P289 416 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 MRVI1Q9Y6F6 885 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 ZMYM3Q14202 1370 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 SOX12O15370 315 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 SRGAP3O43295 1099 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 HOMEZQ8IX15 550 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 ZNF710Q8N1W2 664 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 EHBP1L1Q8N3D4 1523 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 ANKRD36BQ8N2N9 1353 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 SDSP20132 328 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 GCKP35557 465 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 CCDC181Q5TID7 509 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 YY1AP1Q9H869 796 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.89□□□□□ -0.51
CD28-202ENST00000374481 ABCA10Q8WWZ4 1543 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 GAPVD1Q14C86 1478 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 TRIM29Q14134 588 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 USP26Q9BXU7 913 aa11.89□□□□□ -0.51
CD28-202ENST00000374481 TOPBP1Q92547 1522 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 RAD50Q92878 1312 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 BLOC1S2Q6QNY1 142 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 CHAMP1Q96JM3 812 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 RNF216Q9NWF9 866 aaPredicted RBP11.88□□□□□ -0.51
CD28-202ENST00000374481 DNMBPQ6XZF7 1577 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 SURF6O75683 361 aaKnown RBP11.88□□□□□ -0.51
CD28-202ENST00000374481 CEP112Q8N8E3 955 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 SRCIN1Q9C0H9 1055 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 CCDC196A0A1B0GTZ2 297 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 CTAGE15A4D2H0 777 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 DCAF8L1A6NGE4 600 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 SLFN14P0C7P3 912 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 CTAGE8P0CG41 777 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 MAGEA9P43362 315 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 LIG3P49916 1009 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 CTAGE6Q86UF2 777 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 CTAGE4Q8IX94 777 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 AFAP1L1Q8TED9 768 aa11.88□□□□□ -0.51
CD28-202ENST00000374481 ANKRD50Q9ULJ7 1429 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 SYT1P21579 422 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 MEX3CQ5U5Q3 659 aaKnown RBP11.87□□□□□ -0.51
CD28-202ENST00000374481 CCDC114Q96M63 670 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 VEZTQ9HBM0 779 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 PTPN23Q9H3S7 1636 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 KIF1CO43896 1103 aaKnown RBP11.87□□□□□ -0.51
CD28-202ENST00000374481 ATP2C2O75185 946 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 SUPT6HQ7KZ85 1726 aaKnown RBP11.87□□□□□ -0.51
CD28-202ENST00000374481 MAP4K4O95819 1239 aaPredicted RBP11.87□□□□□ -0.51
CD28-202ENST00000374481 NAA30Q147X3 362 aaPredicted RBP11.87□□□□□ -0.51
CD28-202ENST00000374481 HSP90AB4PQ58FF6 505 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 ELP1O95163 1332 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 GNAI3P08754 354 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 NUP133Q8WUM0 1156 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 USP16Q9Y5T5 823 aa11.87□□□□□ -0.51
CD28-202ENST00000374481 CWC27Q6UX04 472 aaKnown RBP11.86□□□□□ -0.51
CD28-202ENST00000374481 MMS22LQ6ZRQ5 1243 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 ATRIPQ8WXE1 791 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 GNAI2P04899 355 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 ALDH1L2Q3SY69 923 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 EFCAB13Q8IY85 973 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 AOPEPQ8N6M6 819 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 CBX8Q9HC52 389 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 BIN1O00499 593 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 BRD1O95696 1058 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 FAM76AQ8TAV0 307 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 ANKRD7Q92527 254 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 SPTLC3Q9NUV7 552 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 PUF60Q9UHX1 559 aaKnown RBP11.86□□□□□ -0.51
CD28-202ENST00000374481 CUL7Q14999 1698 aa11.86□□□□□ -0.51
CD28-202ENST00000374481 CD2BP2O95400 341 aaKnown RBP11.85□□□□□ -0.51
CD28-202ENST00000374481 SSBP05455 408 aaKnown RBP eCLIP11.85□□□□□ -0.51
CD28-202ENST00000374481 HMOX1P09601 288 aa11.85□□□□□ -0.51
CD28-202ENST00000374481 FBXO18Q8NFZ0 1043 aa11.85□□□□□ -0.51
CD28-202ENST00000374481 SYTL4Q96C24 671 aaPredicted RBP11.85□□□□□ -0.51
CD28-202ENST00000374481 DACH1Q9UI36 760 aa11.85□□□□□ -0.51
CD28-202ENST00000374481 RHOXF2BP0C7M4 288 aa11.85□□□□□ -0.51
CD28-202ENST00000374481 ARID4AP29374 1257 aaPredicted RBP11.85□□□□□ -0.51
CD28-202ENST00000374481 LRRFIP1Q32MZ4 808 aaKnown RBP11.85□□□□□ -0.51
CD28-202ENST00000374481 ISM2Q6H9L7 571 aa11.85□□□□□ -0.51
CD28-202ENST00000374481 JMYQ8N9B5 988 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms