RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 KIAA2012Q0VF49 1180 aa19.79■□□□□ 0.76
SDC4-201ENST00000372733 USP25Q9UHP3 1055 aa19.79■□□□□ 0.76
SDC4-201ENST00000372733 AMPHP49418 695 aa19.78■□□□□ 0.76
SDC4-201ENST00000372733 ARID3AQ99856 593 aa19.78■□□□□ 0.76
SDC4-201ENST00000372733 ADAMTS13Q76LX8 1427 aa19.78■□□□□ 0.76
SDC4-201ENST00000372733 RAD50Q92878 1312 aa19.78■□□□□ 0.76
SDC4-201ENST00000372733 TCHHQ07283 1943 aa19.77■□□□□ 0.76
SDC4-201ENST00000372733 ZNF830Q96NB3 372 aaPredicted RBP19.77■□□□□ 0.76
SDC4-201ENST00000372733 SNX14Q9Y5W7 946 aa19.77■□□□□ 0.76
SDC4-201ENST00000372733 DYNC1I1O14576 645 aa19.76■□□□□ 0.75
SDC4-201ENST00000372733 PI4K2BQ8TCG2 481 aa19.76■□□□□ 0.75
SDC4-201ENST00000372733 SSH3Q8TE77 659 aa19.76■□□□□ 0.75
SDC4-201ENST00000372733 SURF6O75683 361 aaKnown RBP19.76■□□□□ 0.75
SDC4-201ENST00000372733 PLEKHG5O94827 1062 aa19.76■□□□□ 0.75
SDC4-201ENST00000372733 HDGFP51858 240 aaKnown RBP19.76■□□□□ 0.75
SDC4-201ENST00000372733 CCDC183Q5T5S1 534 aa19.76■□□□□ 0.75
SDC4-201ENST00000372733 TMEM87AQ8NBN3 555 aa19.76■□□□□ 0.75
SDC4-201ENST00000372733 TMEM2Q9UHN6 1383 aa19.76■□□□□ 0.75
SDC4-201ENST00000372733 GNAT3A8MTJ3 354 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 SGSM2O43147 1006 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 DTNBO60941 627 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 AK2P54819 239 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 PPP1R42Q7Z4L9 355 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 RASEFQ8IZ41 740 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 MAP7D2Q96T17 732 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 HCLS1P14317 486 aaPredicted RBP19.75■□□□□ 0.75
SDC4-201ENST00000372733 TTC14Q96N46 770 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 PHAXQ9H814 394 aaKnown RBP19.75■□□□□ 0.75
SDC4-201ENST00000372733 PXDNLA1KZ92 1463 aa19.75■□□□□ 0.75
SDC4-201ENST00000372733 ZSCAN22P10073 491 aaPredicted RBP19.74■□□□□ 0.75
SDC4-201ENST00000372733 ESF1Q9H501 851 aaKnown RBP19.74■□□□□ 0.75
SDC4-201ENST00000372733 N4BP2Q86UW6 1770 aaPredicted RBP19.74■□□□□ 0.75
SDC4-201ENST00000372733 RUFY3Q7L099 469 aa19.74■□□□□ 0.75
SDC4-201ENST00000372733 FAM184AQ8NB25 1140 aa19.74■□□□□ 0.75
SDC4-201ENST00000372733 LSG1Q9H089 658 aaKnown RBP19.74■□□□□ 0.75
SDC4-201ENST00000372733 FIBPO43427 364 aa19.73■□□□□ 0.75
SDC4-201ENST00000372733 CPA1P15085 419 aa19.73■□□□□ 0.75
SDC4-201ENST00000372733 IL17REQ8NFR9 667 aa19.73■□□□□ 0.75
SDC4-201ENST00000372733 RHPN1Q8TCX5 695 aa19.73■□□□□ 0.75
SDC4-201ENST00000372733 TNRQ92752 1358 aa19.73■□□□□ 0.75
SDC4-201ENST00000372733 DIP2BQ9P265 1576 aa19.73■□□□□ 0.75
SDC4-201ENST00000372733 TTC21AQ8NDW8 1320 aa19.73■□□□□ 0.75
SDC4-201ENST00000372733 SYT1P21579 422 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 HDGFL1Q5TGJ6 251 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 C17orf53Q8N3J3 647 aaPredicted RBP19.72■□□□□ 0.75
SDC4-201ENST00000372733 TTC12Q9H892 705 aaPredicted RBP19.72■□□□□ 0.75
SDC4-201ENST00000372733 EPB41L2O43491 1005 aaKnown RBP19.72■□□□□ 0.75
SDC4-201ENST00000372733 STX6O43752 255 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 LARGE1O95461 756 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 ADCY5O95622 1261 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 DNTTIP2Q5QJE6 756 aaKnown RBP19.72■□□□□ 0.75
SDC4-201ENST00000372733 SPG7Q9UQ90 795 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 HTATSF1O43719 755 aaKnown RBP19.72■□□□□ 0.75
SDC4-201ENST00000372733 POLA2Q14181 598 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 UVSSAQ2YD98 709 aa19.72■□□□□ 0.75
SDC4-201ENST00000372733 MAP3K5Q99683 1374 aa19.71■□□□□ 0.75
SDC4-201ENST00000372733 SRGAP3O43295 1099 aa19.71■□□□□ 0.75
SDC4-201ENST00000372733 RAB11FIP3O75154 756 aa19.71■□□□□ 0.75
SDC4-201ENST00000372733 CWC27Q6UX04 472 aaKnown RBP19.71■□□□□ 0.75
SDC4-201ENST00000372733 JARID2Q92833 1246 aaPredicted RBP19.71■□□□□ 0.75
SDC4-201ENST00000372733 LIMCH1Q9UPQ0 1083 aa19.71■□□□□ 0.75
SDC4-201ENST00000372733 F13A1P00488 732 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 UBE2HP62256 183 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 NGDNQ8NEJ9 315 aaKnown RBP19.7■□□□□ 0.74
SDC4-201ENST00000372733 SLC26A8Q96RN1 970 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 SMC3Q9UQE7 1217 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 PTPRUQ92729 1446 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 CNTROBQ8N137 903 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 PIBF1Q8WXW3 757 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 UBR1Q8IWV7 1749 aa19.7■□□□□ 0.74
SDC4-201ENST00000372733 NBPF7P0C2Y1 421 aaPredicted RBP19.69■□□□□ 0.74
SDC4-201ENST00000372733 LTKP29376 864 aa19.69■□□□□ 0.74
SDC4-201ENST00000372733 TAF7Q15545 349 aaPredicted RBP19.69■□□□□ 0.74
SDC4-201ENST00000372733 KIF1BPQ96EK5 621 aa19.69■□□□□ 0.74
SDC4-201ENST00000372733 LTV1Q96GA3 475 aaPredicted RBP19.69■□□□□ 0.74
SDC4-201ENST00000372733 PIK3C2AO00443 1686 aa19.69■□□□□ 0.74
SDC4-201ENST00000372733 CASTP20810 708 aaKnown RBP19.69■□□□□ 0.74
SDC4-201ENST00000372733 NUTM2GQ5VZR2 741 aa19.69■□□□□ 0.74
SDC4-201ENST00000372733 GIMAP6Q6P9H5 292 aa19.68■□□□□ 0.74
SDC4-201ENST00000372733 TSC1Q92574 1164 aa19.68■□□□□ 0.74
SDC4-201ENST00000372733 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.68■□□□□ 0.74
SDC4-201ENST00000372733 CCDC83Q8IWF9 413 aa19.68■□□□□ 0.74
SDC4-201ENST00000372733 NWD1Q149M9 1564 aa19.68■□□□□ 0.74
SDC4-201ENST00000372733 EIF2S2P20042 333 aaKnown RBP19.67■□□□□ 0.74
SDC4-201ENST00000372733 NOLC1Q14978 699 aaKnown RBP eCLIP19.67■□□□□ 0.74
SDC4-201ENST00000372733 MYRIPQ8NFW9 859 aa19.67■□□□□ 0.74
SDC4-201ENST00000372733 CACNA1FO60840 1977 aa19.67■□□□□ 0.74
SDC4-201ENST00000372733 PLCB2Q00722 1185 aa19.67■□□□□ 0.74
SDC4-201ENST00000372733 USHBP1Q8N6Y0 703 aa19.67■□□□□ 0.74
SDC4-201ENST00000372733 HOXC9P31274 260 aa19.66■□□□□ 0.74
SDC4-201ENST00000372733 NLRP6P59044 892 aa19.66■□□□□ 0.74
SDC4-201ENST00000372733 DNM1Q05193 864 aaKnown RBP19.66■□□□□ 0.74
SDC4-201ENST00000372733 LETM1O95202 739 aaPredicted RBP19.65■□□□□ 0.74
SDC4-201ENST00000372733 GJB2P29033 226 aa19.65■□□□□ 0.74
SDC4-201ENST00000372733 HYPKQ9NX55 129 aa19.65■□□□□ 0.74
SDC4-201ENST00000372733 PTH1RQ03431 593 aa19.65■□□□□ 0.74
SDC4-201ENST00000372733 ADCK5Q3MIX3 580 aa19.65■□□□□ 0.74
SDC4-201ENST00000372733 MTERF4Q7Z6M4 381 aaKnown RBP19.65■□□□□ 0.74
SDC4-201ENST00000372733 DDX54Q8TDD1 881 aaKnown RBP19.65■□□□□ 0.74
SDC4-201ENST00000372733 FUCA2Q9BTY2 467 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms