RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 PRM3Q9NNZ6 103 aa11.77□□□□□ -0.53
TPM3-213ENST00000368545 POGKQ9P215 609 aa11.77□□□□□ -0.53
TPM3-213ENST00000368545 NPC1L1Q9UHC9 1359 aa11.76□□□□□ -0.53
TPM3-213ENST00000368545 AP1G2O75843 785 aa11.76□□□□□ -0.53
TPM3-213ENST00000368545 KCNA1Q09470 495 aa11.76□□□□□ -0.53
TPM3-213ENST00000368545 PRAM1Q96QH2 718 aa11.76□□□□□ -0.53
TPM3-213ENST00000368545 MYBBP1AQ9BQG0 1328 aaKnown RBP11.76□□□□□ -0.53
TPM3-213ENST00000368545 PLSCR1O15162 318 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 PRELPP51888 382 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 FAM98CQ17RN3 349 aaKnown RBP11.75□□□□□ -0.53
TPM3-213ENST00000368545 HDGFL1Q5TGJ6 251 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 KRT28Q7Z3Y7 464 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 SIRT1Q96EB6 747 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 KNSTRNQ9Y448 316 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 PATL2C9JE40 543 aaKnown RBP11.75□□□□□ -0.53
TPM3-213ENST00000368545 C6orf132Q5T0Z8 1188 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 FMN2Q9NZ56 1722 aa11.75□□□□□ -0.53
TPM3-213ENST00000368545 ROBO2Q9HCK4 1378 aa11.74□□□□□ -0.53
TPM3-213ENST00000368545 MOXD2PA6NHM9 499 aa11.74□□□□□ -0.53
TPM3-213ENST00000368545 SRPK2P78362 688 aaKnown RBP11.74□□□□□ -0.53
TPM3-213ENST00000368545 RTL5Q5HYW3 569 aaPredicted RBP11.74□□□□□ -0.53
TPM3-213ENST00000368545 MRS2Q9HD23 443 aa11.74□□□□□ -0.53
TPM3-213ENST00000368545 BRD4O60885 1362 aaPredicted RBP11.73□□□□□ -0.53
TPM3-213ENST00000368545 FOXO3O43524 673 aa11.73□□□□□ -0.53
TPM3-213ENST00000368545 GRIN3BO60391 1043 aa11.73□□□□□ -0.53
TPM3-213ENST00000368545 CD46P15529 392 aa11.73□□□□□ -0.53
TPM3-213ENST00000368545 ZNF710Q8N1W2 664 aa11.73□□□□□ -0.53
TPM3-213ENST00000368545 USTQ9Y2C2 406 aa11.73□□□□□ -0.53
TPM3-213ENST00000368545 LILRB3O75022 631 aa11.72□□□□□ -0.53
TPM3-213ENST00000368545 PCDHB15Q9Y5E8 787 aa11.72□□□□□ -0.53
TPM3-213ENST00000368545 TRIM37O94972 964 aa11.72□□□□□ -0.53
TPM3-213ENST00000368545 USP17L8P0C7I0 530 aa11.72□□□□□ -0.53
TPM3-213ENST00000368545 SAFB2Q14151 953 aaKnown RBP eCLIP11.72□□□□□ -0.53
TPM3-213ENST00000368545 RBM46Q8TBY0 533 aaKnown RBP11.72□□□□□ -0.53
TPM3-213ENST00000368545 SYT17Q9BSW7 474 aa11.72□□□□□ -0.53
TPM3-213ENST00000368545 MTFR1LQ9H019 292 aa11.72□□□□□ -0.53
TPM3-213ENST00000368545 RBM27Q9P2N5 1060 aaKnown RBP11.72□□□□□ -0.53
TPM3-213ENST00000368545 THRAP3Q9Y2W1 955 aaKnown RBP11.72□□□□□ -0.53
TPM3-213ENST00000368545 ANKRD36BQ8N2N9 1353 aa11.72□□□□□ -0.53
TPM3-213ENST00000368545 NDUFV2P19404 249 aa11.71□□□□□ -0.53
TPM3-213ENST00000368545 APLP1P51693 650 aa11.71□□□□□ -0.53
TPM3-213ENST00000368545 PDE3BQ13370 1112 aa11.71□□□□□ -0.53
TPM3-213ENST00000368545 NLRP13Q86W25 1043 aa11.71□□□□□ -0.54
TPM3-213ENST00000368545 COLQQ9Y215 455 aaPredicted RBP11.71□□□□□ -0.54
TPM3-213ENST00000368545 CSB-PGBD3P0DP91 1061 aa11.7□□□□□ -0.54
TPM3-213ENST00000368545 ANKARQ7Z5J8 1434 aa11.7□□□□□ -0.54
TPM3-213ENST00000368545 PLEKHH1Q9ULM0 1364 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 E9PSI1 815 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 CC2D1BQ5T0F9 858 aaKnown RBP11.69□□□□□ -0.54
TPM3-213ENST00000368545 NUTM1Q86Y26 1132 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 TMC1Q8TDI8 760 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 NSD3Q9BZ95 1437 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 SPATA31A1Q5TZJ5 1347 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 STK32BQ9NY57 414 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 PCDHGA4Q9Y5G9 962 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 BCL9O00512 1426 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 SHANK3Q9BYB0 1731 aa11.69□□□□□ -0.54
TPM3-213ENST00000368545 CNGB1Q14028 1251 aaPredicted RBP11.68□□□□□ -0.54
TPM3-213ENST00000368545 WAPLQ7Z5K2 1190 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 ATP7BP35670 1465 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 NSD2O96028 1365 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 RCCD1A6NED2 376 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 FOSBP53539 338 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 PRSS12P56730 875 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 CCDC184Q52MB2 194 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 CDK19Q9BWU1 502 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 SLC12A5Q9H2X9 1139 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 BTG4Q9NY30 223 aa11.68□□□□□ -0.54
TPM3-213ENST00000368545 ANKRD26Q9UPS8 1709 aa11.67□□□□□ -0.54
TPM3-213ENST00000368545 CABLES1Q8TDN4 633 aa11.67□□□□□ -0.54
TPM3-213ENST00000368545 PPP1R12CQ9BZL4 782 aa11.67□□□□□ -0.54
TPM3-213ENST00000368545 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.66□□□□□ -0.54
TPM3-213ENST00000368545 CDCA7LQ96GN5 454 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 CARD14Q9BXL6 1004 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 NDUFB9Q9Y6M9 179 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 WASLO00401 505 aaPredicted RBP11.66□□□□□ -0.54
TPM3-213ENST00000368545 GPR37L1O60883 481 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 HMGB2P26583 209 aaKnown RBP11.66□□□□□ -0.54
TPM3-213ENST00000368545 GPR162Q16538 588 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 FHDC1Q9C0D6 1143 aaPredicted RBP11.66□□□□□ -0.54
TPM3-213ENST00000368545 TERF2IPQ9NYB0 399 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 IVNS1ABPQ9Y6Y0 642 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 KIF20BQ96Q89 1820 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 CGNL1Q0VF96 1302 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 A0A1W2PP64 1363 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 TOPAZ1Q8N9V7 1692 aa11.66□□□□□ -0.54
TPM3-213ENST00000368545 ITSN1Q15811 1721 aa11.65□□□□□ -0.54
TPM3-213ENST00000368545 SEC24BO95487 1268 aa11.65□□□□□ -0.54
TPM3-213ENST00000368545 SLC16A10Q8TF71 515 aa11.65□□□□□ -0.54
TPM3-213ENST00000368545 CD163L1Q9NR16 1453 aa11.65□□□□□ -0.54
TPM3-213ENST00000368545 GJA5P36382 358 aa11.65□□□□□ -0.55
TPM3-213ENST00000368545 FAM9BQ8IZU0 186 aa11.65□□□□□ -0.55
TPM3-213ENST00000368545 PARP4Q9UKK3 1724 aaKnown RBP11.65□□□□□ -0.55
TPM3-213ENST00000368545 OVOS2A0A0G2JMS6 1433 aa11.64□□□□□ -0.55
TPM3-213ENST00000368545 OVOS2A0A0J9YW53 1432 aa11.64□□□□□ -0.55
TPM3-213ENST00000368545 OVOS2Q6IE36 1432 aa11.64□□□□□ -0.55
TPM3-213ENST00000368545 AKAP12Q02952 1782 aa11.64□□□□□ -0.55
TPM3-213ENST00000368545 DDX11L8A8MPP1 907 aa11.64□□□□□ -0.55
TPM3-213ENST00000368545 PELP1Q8IZL8 1130 aaKnown RBP11.64□□□□□ -0.55
TPM3-213ENST00000368545 ZDHHC16Q969W1 377 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms