RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 SLC12A7Q9Y666 1083 aa11.21□□□□□ -0.62
CUX1-203ENST00000360264 IFFO1Q0D2I5 559 aa11.21□□□□□ -0.62
CUX1-203ENST00000360264 IFIT5Q13325 482 aaKnown RBP11.21□□□□□ -0.62
CUX1-203ENST00000360264 PIBF1Q8WXW3 757 aa11.21□□□□□ -0.62
CUX1-203ENST00000360264 CDC5LQ99459 802 aaKnown RBP11.21□□□□□ -0.62
CUX1-203ENST00000360264 PLVAPQ9BX97 442 aa11.21□□□□□ -0.62
CUX1-203ENST00000360264 IDH1O75874 414 aaKnown RBP11.21□□□□□ -0.62
CUX1-203ENST00000360264 PPM1FP49593 454 aaPredicted RBP11.21□□□□□ -0.62
CUX1-203ENST00000360264 GOLGA6L9A6NEM1 432 aa11.21□□□□□ -0.62
CUX1-203ENST00000360264 CAVIN2O95810 425 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 CCDC141Q6ZP82 1450 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 KANK3Q6NY19 840 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 CACNA2D4Q7Z3S7 1137 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 TEX13AQ9BXU3 409 aaPredicted RBP11.2□□□□□ -0.62
CUX1-203ENST00000360264 ABCC11Q96J66 1382 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 ZSCAN12O43309 604 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 TTC12Q9H892 705 aaPredicted RBP11.2□□□□□ -0.62
CUX1-203ENST00000360264 PAFAH1B1P43034 410 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 BAG4O95429 457 aaKnown RBP11.2□□□□□ -0.62
CUX1-203ENST00000360264 SPATA24Q86W54 205 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 COMMD10Q9Y6G5 202 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 ANO10Q9NW15 660 aa11.2□□□□□ -0.62
CUX1-203ENST00000360264 IFT140Q96RY7 1462 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 CASQ1P31415 396 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 RPAP2Q8IXW5 612 aaPredicted RBP11.19□□□□□ -0.62
CUX1-203ENST00000360264 DDX11Q96FC9 970 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 C1orf115Q9H7X2 142 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 NEMFO60524 1076 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 HMG20BQ9P0W2 317 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 TAF7Q15545 349 aaPredicted RBP11.19□□□□□ -0.62
CUX1-203ENST00000360264 CCDC175P0C221 793 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 MYO1BO43795 1136 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 CALML4Q96GE6 196 aa11.19□□□□□ -0.62
CUX1-203ENST00000360264 CCDC183Q5T5S1 534 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 SPECC1LQ69YQ0 1117 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 TTLL12Q14166 644 aaPredicted RBP11.18□□□□□ -0.62
CUX1-203ENST00000360264 TSNARE1Q96NA8 513 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 CFAP57Q96MR6 1250 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 TSR2Q969E8 191 aaKnown RBP11.18□□□□□ -0.62
CUX1-203ENST00000360264 IKBKGQ9Y6K9 419 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 PDE4BQ07343 736 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 CFAP70Q5T0N1 1121 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 AQRO60306 1485 aaKnown RBP eCLIP11.18□□□□□ -0.624e-7■■■■□ 26.1
CUX1-203ENST00000360264 ERMNQ8TAM6 284 aa11.18□□□□□ -0.62
CUX1-203ENST00000360264 CCDC194A0A1B0GVG4 234 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 LDHCP07864 332 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 TCP11L1Q9NUJ3 509 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 IGF1RP08069 1367 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 BICDL1Q6ZP65 573 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 DDX54Q8TDD1 881 aaKnown RBP11.17□□□□□ -0.62
CUX1-203ENST00000360264 C8orf76Q96K31 380 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 RANBP6O60518 1105 aaKnown RBP11.17□□□□□ -0.62
CUX1-203ENST00000360264 PTPN14Q15678 1187 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 DUSP27Q5VZP5 1158 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 PRG4Q92954 1404 aaPredicted RBP11.17□□□□□ -0.62
CUX1-203ENST00000360264 PIP4K2BP78356 416 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 MYO10Q9HD67 2058 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 MX1P20591 662 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 CTNNA2P26232 953 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 STK11IPQ8N1F8 1099 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 UQCRHLA0A096LP55 91 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 UQCRHP07919 91 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 NFE2L2Q16236 605 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.17□□□□□ -0.623e-7■■■■■ 27.8
CUX1-203ENST00000360264 BMP15O95972 392 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 ZGPATQ8N5A5 531 aaKnown RBP11.17□□□□□ -0.62
CUX1-203ENST00000360264 NUP88Q99567 741 aaPredicted RBP11.17□□□□□ -0.62
CUX1-203ENST00000360264 PRPHP41219 470 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 CCDC96Q2M329 555 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 FAM135AQ9P2D6 1515 aa11.17□□□□□ -0.62
CUX1-203ENST00000360264 NUTM2BA6NNL0 878 aaPredicted RBP11.16□□□□□ -0.62
CUX1-203ENST00000360264 NUTM2EB1AL46 878 aaPredicted RBP11.16□□□□□ -0.62
CUX1-203ENST00000360264 HLA-DOAP06340 250 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 NUTM2AQ8IVF1 878 aaPredicted RBP11.16□□□□□ -0.62
CUX1-203ENST00000360264 ERBINQ96RT1 1412 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 PTPRCP08575 1304 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 EPRSP07814 1512 aaKnown RBP11.16□□□□□ -0.62
CUX1-203ENST00000360264 GSTO1P78417 241 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 GIMAP7Q8NHV1 300 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 TOP1P11387 765 aaKnown RBP11.16□□□□□ -0.62
CUX1-203ENST00000360264 TMPOP42166 694 aaKnown RBP11.16□□□□□ -0.62
CUX1-203ENST00000360264 C6orf163Q5TEZ5 329 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 UBA5Q9GZZ9 404 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 SYNCQ9H7C4 482 aa11.16□□□□□ -0.62
CUX1-203ENST00000360264 NLRP5P59047 1200 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 STX1AQ16623 288 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 UTP14AQ9BVJ6 771 aaKnown RBP11.15□□□□□ -0.62
CUX1-203ENST00000360264 GOLGA8BA8MQT2 603 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 CABP5Q9NP86 173 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 RASAL2Q9UJF2 1139 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 TBC1D5Q92609 795 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 ABCF2Q9UG63 623 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 ZNF213O14771 459 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 NCBP1Q09161 790 aaKnown RBP11.15□□□□□ -0.62
CUX1-203ENST00000360264 RMND1Q9NWS8 449 aa11.15□□□□□ -0.62
CUX1-203ENST00000360264 CCDC174Q6PII3 467 aa11.15□□□□□ -0.63
CUX1-203ENST00000360264 FAM177A1Q8N128 213 aaPredicted RBP11.15□□□□□ -0.63
CUX1-203ENST00000360264 SLC12A5Q9H2X9 1139 aa11.15□□□□□ -0.63
CUX1-203ENST00000360264 KIF4BQ2VIQ3 1234 aa11.15□□□□□ -0.63
CUX1-203ENST00000360264 KLHL10Q6JEL2 608 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms