RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 MKNK2Q9HBH9 465 aa18.57■□□□□ 0.56
COL18A1-203ENST00000359759 FYCO1Q9BQS8 1478 aa18.56■□□□□ 0.56
COL18A1-203ENST00000359759 TNPO1Q92973 898 aaKnown RBP18.56■□□□□ 0.56
COL18A1-203ENST00000359759 SF3B2Q13435 895 aaKnown RBP18.56■□□□□ 0.56
COL18A1-203ENST00000359759 TNIP1Q15025 636 aa18.56■□□□□ 0.56
COL18A1-203ENST00000359759 PPM1EQ8WY54 764 aa18.56■□□□□ 0.56
COL18A1-203ENST00000359759 U3KPZ7 1027 aaPredicted RBP18.56■□□□□ 0.56
COL18A1-203ENST00000359759 MTIF2P46199 727 aaKnown RBP18.56■□□□□ 0.56
COL18A1-203ENST00000359759 PANK2Q9BZ23 570 aa18.56■□□□□ 0.56
COL18A1-203ENST00000359759 SNW1Q13573 536 aaKnown RBP18.55■□□□□ 0.56
COL18A1-203ENST00000359759 TFIP11Q9UBB9 837 aaKnown RBP18.55■□□□□ 0.56
COL18A1-203ENST00000359759 RANBP6O60518 1105 aaKnown RBP18.55■□□□□ 0.56
COL18A1-203ENST00000359759 NOP2P46087 812 aaKnown RBP18.55■□□□□ 0.56
COL18A1-203ENST00000359759 DRC1Q96MC2 740 aa18.55■□□□□ 0.56
COL18A1-203ENST00000359759 RNF216Q9NWF9 866 aaPredicted RBP18.55■□□□□ 0.56
COL18A1-203ENST00000359759 CUX1P39880 1505 aa18.55■□□□□ 0.56
COL18A1-203ENST00000359759 SSRP1Q08945 709 aaKnown RBP18.55■□□□□ 0.56
COL18A1-203ENST00000359759 MMRN2Q9H8L6 949 aa18.55■□□□□ 0.56
COL18A1-203ENST00000359759 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
COL18A1-203ENST00000359759 CEP135Q66GS9 1140 aa18.55■□□□□ 0.56
COL18A1-203ENST00000359759 JADE2Q9NQC1 790 aa18.55■□□□□ 0.56
COL18A1-203ENST00000359759 THUMPD2Q9BTF0 503 aaKnown RBP18.54■□□□□ 0.56
COL18A1-203ENST00000359759 ANKRD50Q9ULJ7 1429 aa18.54■□□□□ 0.56
COL18A1-203ENST00000359759 ALS2CR12Q96Q35 445 aa18.54■□□□□ 0.56
COL18A1-203ENST00000359759 HOMER2Q9NSB8 354 aa18.54■□□□□ 0.56
COL18A1-203ENST00000359759 SLC4A8Q2Y0W8 1093 aa18.54■□□□□ 0.56
COL18A1-203ENST00000359759 ZNF830Q96NB3 372 aaPredicted RBP18.54■□□□□ 0.56
COL18A1-203ENST00000359759 GIGYF2Q6Y7W6 1299 aaKnown RBP18.54■□□□□ 0.56
COL18A1-203ENST00000359759 PPP4R3AQ6IN85 833 aa18.53■□□□□ 0.56
COL18A1-203ENST00000359759 RAB11FIP4Q86YS3 637 aa18.53■□□□□ 0.56
COL18A1-203ENST00000359759 CRACR2BQ8N4Y2 399 aaPredicted RBP18.53■□□□□ 0.56
COL18A1-203ENST00000359759 FERMT2Q96AC1 680 aa18.53■□□□□ 0.56
COL18A1-203ENST00000359759 CCDC8Q9H0W5 538 aaPredicted RBP18.53■□□□□ 0.56
COL18A1-203ENST00000359759 SLC12A7Q9Y666 1083 aa18.53■□□□□ 0.56
COL18A1-203ENST00000359759 NLRP5P59047 1200 aa18.53■□□□□ 0.56
COL18A1-203ENST00000359759 PROSER2Q86WR7 435 aaPredicted RBP18.53■□□□□ 0.56
COL18A1-203ENST00000359759 SCAND2PQ9GZW5 306 aaPredicted RBP18.53■□□□□ 0.56
COL18A1-203ENST00000359759 SCAPERQ9BY12 1400 aa18.53■□□□□ 0.56
COL18A1-203ENST00000359759 TERF1P54274 439 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 PAIP2Q9BPZ3 127 aaKnown RBP18.52■□□□□ 0.56
COL18A1-203ENST00000359759 NAPBQ9H115 298 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 MYCNP04198 464 aaPredicted RBP18.52■□□□□ 0.56
COL18A1-203ENST00000359759 GJB2P29033 226 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 CCDC150Q8NCX0 1101 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 ARHGAP5Q13017 1502 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 TCERG1LQ5VWI1 586 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 MYD88Q99836 296 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 MYO1BO43795 1136 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 MCM10Q7L590 875 aa18.52■□□□□ 0.56
COL18A1-203ENST00000359759 RAB11FIP3O75154 756 aa18.52■□□□□ 0.55
COL18A1-203ENST00000359759 IFIT1P09914 478 aaKnown RBP18.52■□□□□ 0.55
COL18A1-203ENST00000359759 FGFR1OPO95684 399 aaKnown RBP18.52■□□□□ 0.55
COL18A1-203ENST00000359759 MNAT1P51948 309 aa18.52■□□□□ 0.55
COL18A1-203ENST00000359759 CCDC12Q8WUD4 166 aaPredicted RBP18.52■□□□□ 0.55
COL18A1-203ENST00000359759 TAOK3Q9H2K8 898 aa18.52■□□□□ 0.55
COL18A1-203ENST00000359759 GOLGA8BA8MQT2 603 aa18.51■□□□□ 0.55
COL18A1-203ENST00000359759 KIF1BPQ96EK5 621 aa18.51■□□□□ 0.55
COL18A1-203ENST00000359759 NAA15Q9BXJ9 866 aaKnown RBP18.51■□□□□ 0.55
COL18A1-203ENST00000359759 C20orf194Q5TEA3 1177 aa18.51■□□□□ 0.55
COL18A1-203ENST00000359759 RPAP2Q8IXW5 612 aaPredicted RBP18.51■□□□□ 0.55
COL18A1-203ENST00000359759 PUF60Q9UHX1 559 aaKnown RBP18.51■□□□□ 0.55
COL18A1-203ENST00000359759 GOLGA8AA7E2F4 631 aa18.51■□□□□ 0.55
COL18A1-203ENST00000359759 HSF2BPO75031 334 aa18.51■□□□□ 0.55
COL18A1-203ENST00000359759 STX1AQ16623 288 aa18.51■□□□□ 0.55
COL18A1-203ENST00000359759 CCDC40Q4G0X9 1142 aa18.5■□□□□ 0.55
COL18A1-203ENST00000359759 PRC1O43663 620 aa18.5■□□□□ 0.55
COL18A1-203ENST00000359759 TMEM266Q2M3C6 531 aa18.5■□□□□ 0.55
COL18A1-203ENST00000359759 SPECC1LQ69YQ0 1117 aa18.5■□□□□ 0.55
COL18A1-203ENST00000359759 FSD2A1L4K1 749 aa18.5■□□□□ 0.55
COL18A1-203ENST00000359759 POTEB2H3BUK9 544 aa18.5■□□□□ 0.55
COL18A1-203ENST00000359759 DDX23Q9BUQ8 820 aaKnown RBP18.49■□□□□ 0.55
COL18A1-203ENST00000359759 ANKRD30BQ9BXX2 1392 aa18.49■□□□□ 0.55
COL18A1-203ENST00000359759 APBB1IPQ7Z5R6 666 aaPredicted RBP18.49■□□□□ 0.55
COL18A1-203ENST00000359759 ZNF213O14771 459 aa18.49■□□□□ 0.55
COL18A1-203ENST00000359759 CEP112Q8N8E3 955 aa18.49■□□□□ 0.55
COL18A1-203ENST00000359759 TBC1D2Q9BYX2 928 aa18.49■□□□□ 0.55
COL18A1-203ENST00000359759 DNAAF4Q8WXU2 420 aa18.49■□□□□ 0.55
COL18A1-203ENST00000359759 A0A1W2PRG0 241 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 HSP90AA4PQ58FG1 418 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 DUSP27Q5VZP5 1158 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 CTCFLQ8NI51 663 aaPredicted RBP18.48■□□□□ 0.55
COL18A1-203ENST00000359759 CTAGE5O15320 804 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 GLRX3O76003 335 aaKnown RBP18.48■□□□□ 0.55
COL18A1-203ENST00000359759 GTF2A1P52655 376 aaPredicted RBP18.48■□□□□ 0.55
COL18A1-203ENST00000359759 SPATA24Q86W54 205 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 GNG11P61952 73 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 PPP1R14CQ8TAE6 165 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 ERBINQ96RT1 1412 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 CCDC160A6NGH7 325 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 GNAT3A8MTJ3 354 aa18.48■□□□□ 0.55
COL18A1-203ENST00000359759 PHAXQ9H814 394 aaKnown RBP18.48■□□□□ 0.55
COL18A1-203ENST00000359759 IFIT3O14879 490 aaKnown RBP18.47■□□□□ 0.55
COL18A1-203ENST00000359759 DZIP1Q86YF9 867 aaKnown RBP18.47■□□□□ 0.55
COL18A1-203ENST00000359759 DNAI2Q9GZS0 605 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 SH2B1Q9NRF2 756 aaPredicted RBP18.47■□□□□ 0.55
COL18A1-203ENST00000359759 ANKRD18BA2A2Z9 1011 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 GSDMDP57764 484 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 SLFN5Q08AF3 891 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 VAT1LQ9HCJ6 419 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 ZNF444Q8N0Y2 327 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms