RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SOGA3Q5TF21 947 aa11.46□□□□□ -0.57
UPF2-202ENST00000357604 TRMT112Q9UI30 125 aaKnown RBP11.46□□□□□ -0.57
UPF2-202ENST00000357604 DZIP1LQ8IYY4 767 aaKnown RBP11.46□□□□□ -0.58
UPF2-202ENST00000357604 MARCH10Q8NA82 808 aaPredicted RBP11.46□□□□□ -0.58
UPF2-202ENST00000357604 TSR2Q969E8 191 aaKnown RBP11.46□□□□□ -0.58
UPF2-202ENST00000357604 PHACTR3Q96KR7 559 aa11.46□□□□□ -0.58
UPF2-202ENST00000357604 RWDD1Q9H446 243 aaPredicted RBP11.46□□□□□ -0.58
UPF2-202ENST00000357604 DDX46Q7L014 1031 aaKnown RBP11.45□□□□□ -0.58
UPF2-202ENST00000357604 RC3H1Q5TC82 1133 aaKnown RBP11.45□□□□□ -0.58
UPF2-202ENST00000357604 PIGBQ92521 554 aa11.45□□□□□ -0.58
UPF2-202ENST00000357604 LGR6Q9HBX8 967 aa11.45□□□□□ -0.58
UPF2-202ENST00000357604 SLFN5Q08AF3 891 aa11.45□□□□□ -0.58
UPF2-202ENST00000357604 LRRFIP1Q32MZ4 808 aaKnown RBP11.45□□□□□ -0.58
UPF2-202ENST00000357604 GNL3LQ9NVN8 582 aaKnown RBP11.45□□□□□ -0.58
UPF2-202ENST00000357604 G3BP1Q13283 466 aaKnown RBP eCLIP11.45□□□□□ -0.58
UPF2-202ENST00000357604 SLC16A10Q8TF71 515 aa11.45□□□□□ -0.58
UPF2-202ENST00000357604 MYD88Q99836 296 aa11.45□□□□□ -0.58
UPF2-202ENST00000357604 THUMPD2Q9BTF0 503 aaKnown RBP11.45□□□□□ -0.58
UPF2-202ENST00000357604 PLCH1Q4KWH8 1693 aa11.45□□□□□ -0.58
UPF2-202ENST00000357604 XIRP1Q702N8 1843 aaKnown RBP11.44□□□□□ -0.58
UPF2-202ENST00000357604 CAMTA1Q9Y6Y1 1673 aa11.44□□□□□ -0.58
UPF2-202ENST00000357604 CNBD1Q8NA66 436 aa11.44□□□□□ -0.58
UPF2-202ENST00000357604 NIP7Q9Y221 180 aaKnown RBP eCLIP11.44□□□□□ -0.58
UPF2-202ENST00000357604 CRKLP46109 303 aaKnown RBP11.44□□□□□ -0.58
UPF2-202ENST00000357604 ERC1Q8IUD2 1116 aa11.44□□□□□ -0.58
UPF2-202ENST00000357604 CYP27B1O15528 508 aa11.44□□□□□ -0.58
UPF2-202ENST00000357604 IL6STP40189 918 aaPredicted RBP11.44□□□□□ -0.58
UPF2-202ENST00000357604 CCDC152Q4G0S7 254 aa11.44□□□□□ -0.58
UPF2-202ENST00000357604 CDC5LQ99459 802 aaKnown RBP11.44□□□□□ -0.58
UPF2-202ENST00000357604 KDRP35968 1356 aa11.44□□□□□ -0.58
UPF2-202ENST00000357604 LRP6O75581 1613 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 LTN1O94822 1766 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 SPON1Q9HCB6 807 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 HEG1Q9ULI3 1381 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 CCDC57Q2TAC2 916 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 ANKRD13DQ6ZTN6 518 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 DNAAF4Q8WXU2 420 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 ZNF622Q969S3 477 aaKnown RBP eCLIP11.43□□□□□ -0.582e-7■■□□□ 14.3
UPF2-202ENST00000357604 H0YIN7 160 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 RPS6KA4O75676 772 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 FAM182BQ5T319 152 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 MPHOSPH8Q99549 860 aa11.43□□□□□ -0.58
UPF2-202ENST00000357604 PLEKHF1Q96S99 279 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 CNNM1Q9NRU3 951 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 SUPT20HQ8NEM7 779 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 PLBD2Q8NHP8 589 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 CCDC136Q96JN2 1154 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 DNAJC10Q8IXB1 793 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 NLRP3Q96P20 1036 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 DDX21Q9NR30 783 aaKnown RBP eCLIP11.42□□□□□ -0.58
UPF2-202ENST00000357604 BCL9LQ86UU0 1499 aa11.42□□□□□ -0.58
UPF2-202ENST00000357604 PLSCR1O15162 318 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 ZBTB3Q9H5J0 574 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 MEGF6O75095 1541 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 EIF4A1P60842 406 aaKnown RBP11.41□□□□□ -0.58
UPF2-202ENST00000357604 FBXW7Q969H0 707 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 CHL1O00533 1208 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 ALDH1B1P30837 517 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 XAGE3Q8WTP9 111 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 CHPF2Q9P2E5 772 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 RGS12O14924 1447 aa11.41□□□□□ -0.58
UPF2-202ENST00000357604 ALDH1L1O75891 902 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 GNAI2P04899 355 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 KSR2Q6VAB6 950 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 ATG3Q9NT62 314 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 MAP3K2Q9Y2U5 619 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 CNTNAP4Q9C0A0 1308 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 ANKRD18BA2A2Z9 1011 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 IL17REQ8NFR9 667 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 ASAP1Q9ULH1 1129 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 FLIIQ13045 1269 aa11.4□□□□□ -0.58
UPF2-202ENST00000357604 DAXXQ9UER7 740 aaPredicted RBP11.4□□□□□ -0.58
UPF2-202ENST00000357604 NOB1Q9ULX3 412 aaKnown RBP11.4□□□□□ -0.58
UPF2-202ENST00000357604 EZH2Q15910 746 aaKnown RBP11.39□□□□□ -0.59
UPF2-202ENST00000357604 GRIPAP1Q4V328 841 aa11.39□□□□□ -0.59
UPF2-202ENST00000357604 AMOTL1Q8IY63 956 aa11.39□□□□□ -0.59
UPF2-202ENST00000357604 EYA3Q99504 573 aa11.39□□□□□ -0.59
UPF2-202ENST00000357604 ERVV-1B6SEH8 477 aa11.39□□□□□ -0.59
UPF2-202ENST00000357604 TCERG1O14776 1098 aaKnown RBP11.39□□□□□ -0.59
UPF2-202ENST00000357604 SLC15A2Q16348 729 aa11.39□□□□□ -0.59
UPF2-202ENST00000357604 ZNF496Q96IT1 587 aaPredicted RBP11.39□□□□□ -0.59
UPF2-202ENST00000357604 COPS6Q7L5N1 327 aa11.38□□□□□ -0.59
UPF2-202ENST00000357604 RNF123Q5XPI4 1314 aa11.38□□□□□ -0.59
UPF2-202ENST00000357604 BCL2L13Q9BXK5 485 aa11.38□□□□□ -0.59
UPF2-202ENST00000357604 C16orf71Q8IYS4 520 aaPredicted RBP11.38□□□□□ -0.59
UPF2-202ENST00000357604 ANO8Q9HCE9 1232 aaPredicted RBP11.38□□□□□ -0.59
UPF2-202ENST00000357604 TBC1D2BQ9UPU7 963 aa11.38□□□□□ -0.59
UPF2-202ENST00000357604 LMO7Q8WWI1 1683 aa11.38□□□□□ -0.59
UPF2-202ENST00000357604 MAP2P11137 1827 aaKnown RBP11.38□□□□□ -0.59
UPF2-202ENST00000357604 ONECUT3O60422 494 aaPredicted RBP11.38□□□□□ -0.59
UPF2-202ENST00000357604 UPF2Q9HAU5 1272 aaKnown RBP11.38□□□□□ -0.59
UPF2-202ENST00000357604 GPTP24298 496 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 TMC4Q7Z404 712 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 DDRGK1Q96HY6 314 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 USP54Q70EL1 1684 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 ERICH6BQ5W0A0 696 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 ARHGAP45Q92619 1136 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 COL15A1P39059 1388 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 IFIT5Q13325 482 aaKnown RBP11.37□□□□□ -0.59
UPF2-202ENST00000357604 CNKSR1Q969H4 720 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms