RNA–Protein interactions for RNA: ENST00000357388.7

SMC4-202, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-202ENST00000357388 HMGB1P09429 215 aaKnown RBP14.84□□□□□ -0.03
SMC4-202ENST00000357388 HLTFQ14527 1009 aaKnown RBP eCLIP14.84□□□□□ -0.035e-35■■■■■ 127.1
SMC4-202ENST00000357388 USP25Q9UHP3 1055 aa14.84□□□□□ -0.03
SMC4-202ENST00000357388 MSL1Q68DK7 614 aa14.84□□□□□ -0.03
SMC4-202ENST00000357388 CCDC155Q8N6L0 562 aa14.83□□□□□ -0.03
SMC4-202ENST00000357388 ARFGAP3Q9NP61 516 aa14.83□□□□□ -0.03
SMC4-202ENST00000357388 FKBP4Q02790 459 aaKnown RBP eCLIP14.83□□□□□ -0.04
SMC4-202ENST00000357388 CCDC6Q16204 474 aa14.83□□□□□ -0.04
SMC4-202ENST00000357388 TTC31Q49AM3 519 aaPredicted RBP14.83□□□□□ -0.04
SMC4-202ENST00000357388 GOLIM4O00461 696 aa14.83□□□□□ -0.04
SMC4-202ENST00000357388 ADCY5O95622 1261 aa14.83□□□□□ -0.04
SMC4-202ENST00000357388 FAM114A1Q8IWE2 563 aa14.83□□□□□ -0.04
SMC4-202ENST00000357388 POLA1P09884 1462 aaPredicted RBP14.83□□□□□ -0.04
SMC4-202ENST00000357388 CFAP70Q5T0N1 1121 aa14.83□□□□□ -0.04
SMC4-202ENST00000357388 CASTP20810 708 aaKnown RBP14.82□□□□□ -0.04
SMC4-202ENST00000357388 SIL1Q9H173 461 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 SETSIPP0DME0 302 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 FERP16591 822 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 PLEKHH2Q8IVE3 1493 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 HFM1A2PYH4 1435 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 CCDC196A0A1B0GTZ2 297 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 BCAR3O75815 825 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 KLHL40Q2TBA0 621 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 ANKS4BQ8N8V4 417 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 TUBBP07437 444 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 MYL6BP14649 208 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 CDK19Q9BWU1 502 aa14.82□□□□□ -0.04
SMC4-202ENST00000357388 RAB11FIP3O75154 756 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 KCNH5Q8NCM2 988 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 TTC14Q96N46 770 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 SCLT1Q96NL6 688 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 CCDC94Q9BW85 323 aaPredicted RBP14.81□□□□□ -0.04
SMC4-202ENST00000357388 U3KPZ7 1027 aaPredicted RBP14.81□□□□□ -0.04
SMC4-202ENST00000357388 FGD6Q6ZV73 1430 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 TNPO1Q92973 898 aaKnown RBP14.81□□□□□ -0.04
SMC4-202ENST00000357388 AKAP2Q9Y2D5 859 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 SPDYE4A6NLX3 237 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 RTEL1-TNFRSF6BF6WH68 1400 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 CRACR2BQ8N4Y2 399 aaPredicted RBP14.81□□□□□ -0.04
SMC4-202ENST00000357388 SREK1Q8WXA9 508 aaKnown RBP14.81□□□□□ -0.04
SMC4-202ENST00000357388 RAB34Q9BZG1 259 aa14.81□□□□□ -0.04
SMC4-202ENST00000357388 PIP4K2BP78356 416 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 HS1BP3Q53T59 392 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 KANK3Q6NY19 840 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 TMC6Q7Z403 805 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 AACSQ86V21 672 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 TMEM87AQ8NBN3 555 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 TRMT1Q9NXH9 659 aaKnown RBP14.8□□□□□ -0.04
SMC4-202ENST00000357388 SEC63Q9UGP8 760 aaKnown RBP14.8□□□□□ -0.04
SMC4-202ENST00000357388 ZPR1O75312 459 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 AIDAQ96BJ3 306 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 CAVIN4Q5BKX8 364 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 HOMER2Q9NSB8 354 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 SYNJ2O15056 1496 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 BTBD11A6QL63 1104 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 CEP83Q9Y592 693 aa14.8□□□□□ -0.04
SMC4-202ENST00000357388 RSRC1Q96IZ7 334 aaKnown RBP14.79□□□□□ -0.04
SMC4-202ENST00000357388 USP5P45974 858 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 CWC27Q6UX04 472 aaKnown RBP14.79□□□□□ -0.04
SMC4-202ENST00000357388 CCDC121Q6ZUS5 278 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 SLF2Q8IX21 1173 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 CPSF2Q9P2I0 782 aaKnown RBP14.79□□□□□ -0.04
SMC4-202ENST00000357388 RSPH14Q9UHP6 348 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 EHMT1Q9H9B1 1298 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 RPGRIP1LQ68CZ1 1315 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 CTAGE15A4D2H0 777 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 CTAGE8P0CG41 777 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 CTAGE6Q86UF2 777 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 CTAGE4Q8IX94 777 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 AFAP1Q8N556 730 aa14.79□□□□□ -0.04
SMC4-202ENST00000357388 DDX23Q9BUQ8 820 aaKnown RBP14.79□□□□□ -0.04
SMC4-202ENST00000357388 IFIT1P09914 478 aaKnown RBP14.79□□□□□ -0.04
SMC4-202ENST00000357388 CCDC12Q8WUD4 166 aaPredicted RBP14.79□□□□□ -0.04
SMC4-202ENST00000357388 EBAG9O00559 213 aa14.78□□□□□ -0.04
SMC4-202ENST00000357388 SMAP1Q8IYB5 467 aaPredicted RBP14.78□□□□□ -0.04
SMC4-202ENST00000357388 GLRX3O76003 335 aaKnown RBP14.78□□□□□ -0.04
SMC4-202ENST00000357388 KIF5BP33176 963 aa14.78□□□□□ -0.04
SMC4-202ENST00000357388 TDRD12Q587J7 1177 aaKnown RBP14.78□□□□□ -0.04
SMC4-202ENST00000357388 TSNARE1Q96NA8 513 aa14.78□□□□□ -0.04
SMC4-202ENST00000357388 NOL3O60936 208 aaKnown RBP14.78□□□□□ -0.04
SMC4-202ENST00000357388 BICDL1Q6ZP65 573 aa14.78□□□□□ -0.04
SMC4-202ENST00000357388 UBE2HP62256 183 aa14.78□□□□□ -0.04
SMC4-202ENST00000357388 LIMCH1Q9UPQ0 1083 aa14.78□□□□□ -0.04
SMC4-202ENST00000357388 ATAD2Q6PL18 1390 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 SRGAP3O43295 1099 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 GNG11P61952 73 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 LRSAM1Q6UWE0 723 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 CNNM3Q8NE01 707 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 CABP1Q9NZU7 370 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 KIF4AO95239 1232 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 POLR3DP05423 398 aaPredicted RBP14.77□□□□□ -0.04
SMC4-202ENST00000357388 CETN1Q12798 172 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 MICALL1Q8N3F8 863 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 C8orf76Q96K31 380 aa14.77□□□□□ -0.04
SMC4-202ENST00000357388 NBPF11Q86T75 865 aa14.77□□□□□ -0.05
SMC4-202ENST00000357388 ARFGAP2Q8N6H7 521 aa14.77□□□□□ -0.05
SMC4-202ENST00000357388 PLVAPQ9BX97 442 aa14.77□□□□□ -0.05
SMC4-202ENST00000357388 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.77□□□□□ -0.052e-10■■■□□ 18.8
SMC4-202ENST00000357388 A0A1B0GUA9 196 aa14.77□□□□□ -0.05
SMC4-202ENST00000357388 IDH1O75874 414 aaKnown RBP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms